mRNA_M-pyrifera_M_contig11585.3287.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: D7G2G1_ECTSI (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G1_ECTSI) HSP 1 Score: 212 bits (540), Expect = 4.370e-68 Identity = 110/150 (73.33%), Postives = 120/150 (80.00%), Query Frame = 1
Query: 7 RIYTVACALMLAGARGFVVNPTLRAPCANRGIGTETAGRRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKNE 456
R VACAL+LAGAR FVVNPTL A G+G GR S AAPLEG+HGMRSRFLPVDQ+DDE FAPRIVQVAGA+P +TVAD+MAVGF+P EMGMW YDFSDP GPQLGTVAVPGGE V NM+EPVAIV PN DLNIQMP +E
Sbjct: 7 RTCVVACALLLAGARAFVVNPTLLPSRAPGGVGAS--GRTGSLSMAAPLEGSHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDE 154
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A6H5JHR7_9PHAE (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR7_9PHAE) HSP 1 Score: 211 bits (538), Expect = 8.210e-67 Identity = 110/153 (71.90%), Postives = 119/153 (77.78%), Query Frame = 1
Query: 7 RIYTVACALMLAGARGFVVNPTL---RAPCANRGIGTETAGRRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKNE 456
R VACAL+LAGAR FVVNPTL RAP T+GR S AAPLEGAHGMRSRFLPVDQ+DDE FAPRIVQVAG +P +TVAD+MAVGF+P EMGMW YDFSDP GPQLGTVAVPGGE V M+EPVAIV PN DLNIQMP +E
Sbjct: 7 RTCVVACALLLAGARAFVVNPTLLSSRAPGGGSAAAVGTSGRTGSLSMAAPLEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGVLPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDE 159
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: D7G2G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G3_ECTSI) HSP 1 Score: 121 bits (303), Expect = 6.810e-32 Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1
Query: 223 RIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKNE 456
R+ QVAGA+P +TVA +MAVGF+P EMGMW YDFSDP GPQLGTVAVPGGE V NM+EPVAIV PN DLNIQMP +E
Sbjct: 6 RMEQVAGALPEITVAYIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDE 83
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A836C9L5_9STRA (RuBisCo_chap_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L5_9STRA) HSP 1 Score: 115 bits (288), Expect = 3.960e-29 Identity = 65/142 (45.77%), Postives = 84/142 (59.15%), Query Frame = 1
Query: 31 LMLAGARGFVVNPTLRAPCANRGIGTETAGRRSSSIAAAPLE-GAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKN 453
L + A GFV P LRA C T T G RS+ + A + G HG SRFLP+ Q+ PR V +AGA PGLT D+ A PAE G W YDF+DP GPQ+GTVA+PGG+ V ++ +PV IV + L I +P++
Sbjct: 11 LYVDAALGFVPAPALRA-CRQARQATATCGSRSTQMVAQMEQTGLHGTGSRFLPIVQIGAREHYPRTVCIAGAYPGLTAEDIAAPTSGEPAEQGTWQYDFTDPEGPQMGTVALPGGDTVTDLIDPVIIVAASDSLGISLPQD 151
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A7S3LGB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGB5_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.840e-26 Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query: 100 IGTETAGRRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK 450
I T+ S++A + + HG + FLP+ QL+ + FAPRIVQ+AG PGL+ AD MAV + G W YDFSDP GPQLGTVA+ G ++V + +PV I+ + + I++PK
Sbjct: 32 IATDITRLHQSALAGSARK--HGQDACFLPIKQLEQDYFAPRIVQIAGGYPGLSKADFMAVTSEQAPDQGQWTYDFSDPDGPQLGTVALEGSQIVHDCEDPVVIIAEHPSIGIELPK 146
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A1E7FB03_9STRA (RuBisCo_chap_C domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB03_9STRA) HSP 1 Score: 107 bits (266), Expect = 6.180e-26 Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query: 58 VVNPTLRAPCANRGIGTETAGRRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKN 453
V+ P L A+R I + S + AA HG S +LP+ QLD + + PRIVQ+AGA PG+T + A PP E G W+YDFSDP GPQLGTVA+ G +V +PV I+ +T L+I +P++
Sbjct: 10 VLTPALAWIPASRSISKN----KISQLNAASYGSLHGDNSCYLPLKQLDQDYYGPRIVQIAGAYPGITREEFYATQSEPPPEPGQWNYDFSDPDGPQLGTVAIEGSNVVAVCEDPVVIIAEHTSLSIPLPES 137
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A7S2FVK7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVK7_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.080e-25 Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 121 RRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKN 453
R + +++ P G HG S+F+P+ QLD E +APR VQVAG +PGLT + A +P A G W +DFSDP GPQ+GT+A PG VQ +PVAIV + L+I + N
Sbjct: 39 RPAPTMSEGPPMGQHGTGSKFMPLTQLDSEEYAPRTVQVAGVLPGLTKEEFYAPQSAPAAPPGQWQFDFSDPEGPQMGTIAFPGSANVQACEDPVAIVTNSAHLHISLANN 149
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: B7FTB2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTB2_PHATC) HSP 1 Score: 105 bits (261), Expect = 2.170e-25 Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1
Query: 163 HGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK 450
HG S FLP+ QLD + +APRIVQ+AGA PGLT + V AE+G W YDFSDP GPQ+GTVA+ G ELV +PVAI+ ++ + + +PK
Sbjct: 20 HGQNSCFLPLRQLDQDYYAPRIVQIAGAYPGLTKEEFYGVQSEEAAEVGQWSYDFSDPEGPQVGTVAMDGSELVSFCPDPVAIIAEHSSVGVDLPK 115
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A7S2YFZ8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFZ8_9STRA) HSP 1 Score: 104 bits (259), Expect = 7.000e-25 Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 148 PLEGA---HGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK 450
PLE HG + F+P+ QLD + + PRIVQ+AGA PGLT + M+V P E G W YDFSDP GPQLGTVA+PG E+V +PV I+ + + + +PK
Sbjct: 32 PLEAEPKIHGEGACFMPLKQLDQDHYNPRIVQIAGAYPGLTKEEYMSVTSEPSPERGQWTYDFSDPDGPQLGTVALPGSEIVHFAEDPVVIIAEHPSVGVDLPK 135
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A7S3PYS7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYS7_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.530e-24 Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 163 HGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK 450
HG S F+P++Q+D+E FAPRI+Q+AG PG+T ++++V PAE G W YDFSDP GPQ+GTVA+PG E++ +P I+ + L + +P+
Sbjct: 46 HGESSCFMPLEQVDEEYFAPRIIQIAGMYPGVTKEEILSVTSEQPAEKGQWAYDFSDPDGPQMGTVALPGCEIIDLCEDPAVIIAEHFALGVPLPE 141 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11585.3287.1 >prot_M-pyrifera_M_contig11585.3287.1 ID=prot_M-pyrifera_M_contig11585.3287.1|Name=mRNA_M-pyrifera_M_contig11585.3287.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp MPRIYTVACALMLAGARGFVVNPTLRAPCANRGIGTETAGRRSSSIAAAPback to top mRNA from alignment at M-pyrifera_M_contig11585:5174..8244+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11585.3287.1 ID=mRNA_M-pyrifera_M_contig11585.3287.1|Name=mRNA_M-pyrifera_M_contig11585.3287.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3071bp|location=Sequence derived from alignment at M-pyrifera_M_contig11585:5174..8244+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11585:5174..8244+ >mRNA_M-pyrifera_M_contig11585.3287.1 ID=mRNA_M-pyrifera_M_contig11585.3287.1|Name=mRNA_M-pyrifera_M_contig11585.3287.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig11585:5174..8244+ (Macrocystis pyrifera P11B4 male)back to top |