mRNA_M-pyrifera_M_contig115795.3270.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: UPI0018D7F0D9 (LacI family transcriptional regulator n=2 Tax=Thiosulfatihalobacter marinus TaxID=2792481 RepID=UPI0018D7F0D9) HSP 1 Score: 171 bits (432), Expect = 2.930e-49 Identity = 90/169 (53.25%), Postives = 113/169 (66.86%), Query Frame = 1
Query: 4 GAALMVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAWAASDDVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEAERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
AALMV ET+F QEK+IE A+ WRPDGIIF GDT+S RSR I ++G FVEAWAASD V V+IGLSH+ A ++ L AGYQ +AF VR LGYRVE ERL+GY A+ AG + + Y++GA + +A + T RPDA+F AGD+LA GA+FE
Sbjct: 95 NAALMVFETRFSLEMQEKRIEAAIGWRPDGIIFVGDTVSDRSRRQITASGIPFVEAWAASDTPVGVDIGLSHRAIAAQMTGALIGAGYQTVAFGVRRLGYRVEVERLDGYLDAVSSAGRTPLVVDIADPGEHYKAGAMILRQALDLTSRPDALFLAGDVLAAGAIFECH 263
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: UPI001EF0649F (LacI family DNA-binding transcriptional regulator n=2 Tax=Deinococcus TaxID=1298 RepID=UPI001EF0649F) HSP 1 Score: 98.6 bits (244), Expect = 2.170e-21 Identity = 63/175 (36.00%), Postives = 89/175 (50.86%), Query Frame = 1
Query: 4 GAALMVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAWAASD-----DVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEA-ERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
G LM+ T++ ++E +E L WRP I+ +G S R+ L++++G VE +D +D+NIG SH V LA GY+ IA+A L + R++G++ A++ GLP S S G DL A E P+ DAVFFA D LA GALFE Q
Sbjct: 96 GYQLMLGSTEYSREKEETLVEVFLGWRPSAIVLSGIDHSERTVRLLRASGVPVVEIMDLADGNDTAQPLDLNIGFSHSRVGEAVVTYLAACGYRNIAYAGTLTTLDPRSVRRIQGFQGALKRLGLPHHLIGRSDLPSSLAVGRDLLAGLLEEFPQTDAVFFANDELAAGALFECQ 270
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: UPI00039E74B8 (LacI family DNA-binding transcriptional regulator n=1 Tax=Deinococcus aquatilis TaxID=519440 RepID=UPI00039E74B8) HSP 1 Score: 98.6 bits (244), Expect = 2.280e-21 Identity = 62/175 (35.43%), Postives = 91/175 (52.00%), Query Frame = 1
Query: 4 GAALMVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAWAASDDV-----VDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEA-ERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
G L++ T++ ++EK +E L WRP GII +G S R+ L++++G VE ++ +D+NIG SH V LA GY++IA+A L + R+ G++ A++ GLP + S + S G DL + P DAVFFA D LA GALFE Q
Sbjct: 105 GYQLLLGSTEYSREKEEKLVEVFLGWRPSGIILSGIDHSERTARLLRASGVPVVETMDLAEPEQAGLPLDLNIGFSHYRVGEAVVEYLAACGYRQIAYAGTLTELDPRSVRRIRGFQNALKRLGLPHHQIGRSDQPSSLAVGRDLLSGLLAEHPTLDAVFFANDELAAGALFECQ 279
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: UPI001D0A696F (substrate-binding domain-containing protein n=1 Tax=Roseobacter sp. H9 TaxID=2763262 RepID=UPI001D0A696F) HSP 1 Score: 94.4 bits (233), Expect = 7.730e-21 Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 1
Query: 67 DALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAWAASDDVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEAERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
DA+S++ G + A + LI N SRFVEAWA +D+ VD++IG+S+ +AA A L +AFA R LGY +E R +GYR A+ + + + + +GA+L + + R +V FAGD++AVGALFEAQ
Sbjct: 7 DAMSFKTPGALLA------KGPFLIARNPSRFVEAWAFTDNPVDISIGVSNFDAAHMAAEALLAKQSGAVAFAARRLGYAIERHREDGYRTAVSDVAQDPIVYTVEAVRPAFAAGAELMRQVMGDD-RVKSVLFAGDVIAVGALFEAQ 147
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: UPI0019C86160 (LacI family DNA-binding transcriptional regulator n=1 Tax=Deinococcus aquiradiocola TaxID=393059 RepID=UPI0019C86160) HSP 1 Score: 96.3 bits (238), Expect = 1.630e-20 Identity = 62/175 (35.43%), Postives = 84/175 (48.00%), Query Frame = 1
Query: 4 GAALMVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAW-----AASDDVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEA-ERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
G +M+ T++ ++EK +E L WRP GI+ +G S R+ L+KS G VE + +D+NIG SH V LA GY+ +A+A L + R+ G++ A+ GLP S S G DL P DAVFFA D LA GALFE Q
Sbjct: 105 GYQIMLGSTEYSREKEEKLVEVFLGWRPSGIVLSGIDHSERTVRLLKSAGIPVVEIMDLAVASEQSQALDLNIGFSHAVVGEAVVRYLASCGYRHVAYAGTLTELDPRSVRRIHGFQTALMRLGLPHHLIGRSDLPSSLAVGRDLVTDLLHRHPEMDAVFFANDELAAGALFECQ 279
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: UPI001E45424D (LacI family DNA-binding transcriptional regulator n=1 Tax=Roseomonas sp. CECT 9278 TaxID=2845823 RepID=UPI001E45424D) HSP 1 Score: 95.9 bits (237), Expect = 2.090e-20 Identity = 62/171 (36.26%), Postives = 87/171 (50.88%), Query Frame = 1
Query: 1 HGAALMVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAWAASDDVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEA-ERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
HG LMV ++ + P E+E + L+ R G++ T + R LI+ +G VE +DD +D+ + S+ +AAR + L GY+RIA L + ER G+ A+ EAGLP SG + + E TP DAVFFAGD+LAVGAL E Q
Sbjct: 113 HGYHLMVADSAYSPQEEEALVTAFLAQRVAGLVLHNTTHTPALRALIRRSGVPVVENGTLADDPLDMVVSYSNVDAARAMTLHLVRLGYRRIALVTLPLANNERSLERRRGHAAALAEAGLPADPRIMLEMPPGLPSGCEAIMRLLEITPAVDAVFFAGDVLAVGALLECQ 283
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: A0A1U7NSX4_9DEIO (Gluconate utilization system Gnt-I transcriptional repressor n=2 Tax=Deinococcus marmoris TaxID=249408 RepID=A0A1U7NSX4_9DEIO) HSP 1 Score: 95.1 bits (235), Expect = 4.210e-20 Identity = 57/175 (32.57%), Postives = 88/175 (50.29%), Query Frame = 1
Query: 4 GAALMVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAW-----AASDDVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEA-ERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
G LM+ T++ PA +E+ +E L WRP ++ +G + R+ L++++G VE + +D+NIG SH A LA GY++IA+A L + R++G++ + + LP S + S G +L + P DAVFFA D LA GALFE Q
Sbjct: 106 GYQLMLGSTEYSPAREEQLVEAFLGWRPSAVVLSGLDHTERTSRLLRASGVPVVEIMDLAVEGETGQALDLNIGFSHTRVGEAAATYLARCGYRQIAYAGTLTTLDPRSVRRIQGFQTGLAQLKLPPHLIGRSDQPSSLAVGRELLLSLRRDFPEVDAVFFANDELAAGALFECQ 280
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: A0A833LK20_9HYPH (LacI family DNA-binding transcriptional regulator n=1 Tax=Bauldia sp. TaxID=2575872 RepID=A0A833LK20_9HYPH) HSP 1 Score: 94.4 bits (233), Expect = 8.100e-20 Identity = 58/169 (34.32%), Postives = 90/169 (53.25%), Query Frame = 1
Query: 4 GAALMVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAWAASDDVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEAERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
G ++V+ +++ E+EK + L P+ +I G ++R+R L++ +G V+ +D +D+NIGLS ++AA L GY+RIA L R RLEG+R A RE+G+ + R S + G LF + + P DAVF D LA+G+LFE Q
Sbjct: 102 GLQVLVLNSRYSAEEEEKAVVTLLGHHPEAMIVVGVDQTARTRMLLEQSGVPVVQTMELADAPIDINIGLSQRDAAFAATRYLLGCGYRRIANMTAPLDARAR-RRLEGFRGACRESGVADEMVATAPRQSSVKLGVALFTELIDRWPDVDAVFCGNDNLALGSLFECQ 269
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: A0A7W2GV97_9HYPH (LacI family DNA-binding transcriptional regulator n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A7W2GV97_9HYPH) HSP 1 Score: 94.0 bits (232), Expect = 9.840e-20 Identity = 57/169 (33.73%), Postives = 90/169 (53.25%), Query Frame = 1
Query: 7 AALMVM-ETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAWAASDDVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEAERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
A M+M ET + AE+EK IE L RPDG I G + + +R +++ +G VE W ++ +D + LS+ +A + + A LA+ G++RIAF + R R +GY + EAGL + + +GA++ A+ +PRPDAV D++A G L Q
Sbjct: 99 AVQMIMAETNYSSAEEEKVIESLLRRRPDGFIIVGVSHTRATRTMLEKSGVPVVETWDSTPTPIDSLVSLSNFDAMKAMTASLAQQGFRRIAFVGTVTRDRRAQMRAKGYMAGLAEAGLHEPVVFNARDVTSMGAGAEVAAQIIAASPRPDAVICLNDVIAAGVLLALQ 267
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Match: A0A848K3I0_9HYPH (LacI family gluconate utilization system Gnt-I transcriptional repressor n=6 Tax=Xanthobacteraceae TaxID=335928 RepID=A0A848K3I0_9HYPH) HSP 1 Score: 93.6 bits (231), Expect = 1.410e-19 Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 1
Query: 1 HGAALMVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVEAWAASDDVVDVNIGLSHKEAARRVAAGLAEAGYQRIAFAVRLLGYRVEAERLEGYRLAMREAGLPTCEFEGSSRTSPYQSGADLFAKAWENTPRPDAVFFAGDLLAVGALFEAQ 510
H +++ ET + PAE+EK IE L RPDG + G + + +R L++ +G VE W ++ +D +GLS+ +A + + L G++RI F R R +GY + EAGL + + +SG + + PRPDAV D+LA GAL Q
Sbjct: 98 HAVQMIMAETNYSPAEEEKVIEALLRRRPDGFVIVGVSHTRATRALLEKSGVPVVETWDSTPTPIDSLVGLSNFDAMKAMTEALVAQGFRRIVFVGTATPDRRAQMRAKGYEAGIAEAGLGAPLILNAGDLTSMESGRIVAERIAALRPRPDAVLCLNDVLAAGALLAFQ 267 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115795.3270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig115795.3270.1 >prot_M-pyrifera_M_contig115795.3270.1 ID=prot_M-pyrifera_M_contig115795.3270.1|Name=mRNA_M-pyrifera_M_contig115795.3270.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp MVMETQFDPAEQEKKIEDALSWRPDGIIFAGDTISSRSRHLIKSNGSRFVback to top mRNA from alignment at M-pyrifera_M_contig115795:3..512- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig115795.3270.1 ID=mRNA_M-pyrifera_M_contig115795.3270.1|Name=mRNA_M-pyrifera_M_contig115795.3270.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig115795:3..512- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig115795:3..512- >mRNA_M-pyrifera_M_contig115795.3270.1 ID=mRNA_M-pyrifera_M_contig115795.3270.1|Name=mRNA_M-pyrifera_M_contig115795.3270.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig115795:3..512- (Macrocystis pyrifera P11B4 male)back to top |