mRNA_M-pyrifera_M_contig11575.3263.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11575.3263.1
Unique NamemRNA_M-pyrifera_M_contig11575.3263.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11575.3263.1 vs. uniprot
Match: D8LFD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD2_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 9.480e-91
Identity = 141/207 (68.12%), Postives = 164/207 (79.23%), Query Frame = 1 
Query:    1 SCIRFYIAIHCRGPGQD--GGESDDDNDERL--SDRGQSKGEAGGGHFKKGAWLSLCSAIDTPIPDEGSSDARAAQTFVKGALSPMSEVLAGDFDLRVPVVTAVIDSYNKLSHSDVVVELVDPSGRMKGYLHPGCLEEHGPTLGPGAAVLLKEASELRKQGVSIFVSGPGTTRLLNVHPACVLAVFPADSPLPRPARLDWLRTCGES 609
            +C+  +   H R  GQ   GG SDD++ +R   +D   ++GEAGGGHF KG WLSLCSAID PI +EG+S ++A Q F++GA+SPM EVLAGDFDLRVPVVTAVIDSY KLS SDVVVELVDPSGR+KG+LHPGCLEEHGP+LGPGAA+LLKE        VSIFVSGPGTTRLLNVHP CVLAVFPAD+  P P+RL+WL TCG S
Sbjct:    3 ACLVAFCTFHLRSAGQQDGGGVSDDESAQRRLSNDSDPNEGEAGGGHFTKGPWLSLCSAIDAPIAEEGASGSKAVQAFLRGAVSPMLEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKE--------VSIFVSGPGTTRLLNVHPDCVLAVFPADTSPPAPSRLEWLTTCGGS 201
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BLAST of mRNA_M-pyrifera_M_contig11575.3263.1 vs. uniprot
Match: A0A6H5K4K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K0_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 2.820e-77
Identity = 127/164 (77.44%), Postives = 141/164 (85.98%), Query Frame = 1 
Query:  109 GEAGGGHFKKGAWLSLCSAIDTPIPDEGSSDARAAQTFVKGALSPMSEVLAGDFDLRVPVVTAVIDSYNKLSHSDVVVELVDPSGRMKGYLHPGCLEEHGPTLGPGAAVLLKEASELRKQGVSIFVSGPGTTRLLNVHPACVLAVFPADSPLPRPARLDWLRTC 600
            GEAGGGHF KG WLSLCSAID PI +EG+SD++A Q F++GA+SPMSEVLAGDFDLRVPVVTAVIDSY KLS SDVVVELVDPSGR+KG+LHPGCLEEHGP+LGPGAA+LLKE        VSIFVSGP TTRLLNVHP CVLAVF AD+  P P+RL+WL TC
Sbjct:  117 GEAGGGHFTKGPWLSLCSAIDAPIAEEGASDSKAVQAFLRGAVSPMSEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKE--------VSIFVSGPATTRLLNVHPDCVLAVFAADTSPPAPSRLEWLTTC 272
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11575.3263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFD2_ECTSI9.480e-9168.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4K0_9PHAE2.820e-7777.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11575contigM-pyrifera_M_contig11575:2214..6691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4539
Ec32 orthologEc-07_005850.1
Exons4
Model size609
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11575.3263.1prot_M-pyrifera_M_contig11575.3263.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11575 2214..6691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.757608-CDS-M-pyrifera_M_contig11575:2213..24211622815673.757608-CDS-M-pyrifera_M_contig11575:2213..2421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 2214..2421 +
1692277515.6130018-CDS-M-pyrifera_M_contig11575:2213..24211692277515.6130018-CDS-M-pyrifera_M_contig11575:2213..2421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 2214..2421 +
1622815673.7728126-CDS-M-pyrifera_M_contig11575:3230..33731622815673.7728126-CDS-M-pyrifera_M_contig11575:3230..3373Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 3231..3373 +
1692277515.629594-CDS-M-pyrifera_M_contig11575:3230..33731692277515.629594-CDS-M-pyrifera_M_contig11575:3230..3373Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 3231..3373 +
1622815673.7835026-CDS-M-pyrifera_M_contig11575:5809..59291622815673.7835026-CDS-M-pyrifera_M_contig11575:5809..5929Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 5810..5929 +
1692277515.6408978-CDS-M-pyrifera_M_contig11575:5809..59291692277515.6408978-CDS-M-pyrifera_M_contig11575:5809..5929Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 5810..5929 +
1622815673.7941158-CDS-M-pyrifera_M_contig11575:6553..66911622815673.7941158-CDS-M-pyrifera_M_contig11575:6553..6691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 6554..6691 +
1692277515.652097-CDS-M-pyrifera_M_contig11575:6553..66911692277515.652097-CDS-M-pyrifera_M_contig11575:6553..6691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 6554..6691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11575.3263.1

>prot_M-pyrifera_M_contig11575.3263.1 ID=prot_M-pyrifera_M_contig11575.3263.1|Name=mRNA_M-pyrifera_M_contig11575.3263.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
SCIRFYIAIHCRGPGQDGGESDDDNDERLSDRGQSKGEAGGGHFKKGAWL
SLCSAIDTPIPDEGSSDARAAQTFVKGALSPMSEVLAGDFDLRVPVVTAV
IDSYNKLSHSDVVVELVDPSGRMKGYLHPGCLEEHGPTLGPGAAVLLKEA
SELRKQGVSIFVSGPGTTRLLNVHPACVLAVFPADSPLPRPARLDWLRTC
GES
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mRNA from alignment at M-pyrifera_M_contig11575:2214..6691+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11575.3263.1 ID=mRNA_M-pyrifera_M_contig11575.3263.1|Name=mRNA_M-pyrifera_M_contig11575.3263.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4478bp|location=Sequence derived from alignment at M-pyrifera_M_contig11575:2214..6691+ (Macrocystis pyrifera P11B4 male)
TCCTGCATACGTTTCTACATCGCAATTCATTGCAGGGGCCCTGGGCAGGA
CGGCGGCGAGTCCGATGACGATAACGACGAGAGGTTGAGCGACAGAGGTC
AGAGCAAGGGCGAGGCAGGAGGGGGACACTTCAAGAAGGGCGCCTGGCTG
TCGTTGTGCTCCGCGATAGACACCCCCATTCCGGACGAGGGGTCGAGCGA
CGCAAGAGGTGAAACAACATATAACCAATCCTCAACCGCGAATACCGCAT
GTGCTGCTGCTGCTGTAGGGCTTAGTTTATGGTTTCTTGACGGGGTGGAA
GAGAGGGCCGAAGAGGGGAGGGGGGTCTTGACAAGAGTTGGGGGCACCAG
AAGCTAAAGGAGGTGCTGCCGTGGTGAAGACAATAGAGTTGGCAGGGCCT
CGGGGCCGATAACTCGCCCTTGGCTTTCCGAAGGCACAAATACATGAGGT
TGTACTGTTTTGGCCGACGATTTATCCTCAAACCGAATCAGAATGTTGCG
GTGAGAGCATTGGCACCCATATGAGGTTGGCTGCGGCTTATTAGTCTGGG
CGGAAATATATCGAAGGTTTGGACATGAATATGAACAACCAAACGGTCCC
CACTTTCATTGCAGTCCAGAGCGGTCCAAAATATTCTTACTCCCTCTCGC
ACCCTCAGTTTCTTAAGTTGGACTGTCGCCATGATTTTTCCTACGGCAGT
TTCTCGTTTTGCGCGGATCGGCTGTGGTGAAAGCGTCAAACTCCACTCGC
AAAACCCCATTGCATGTGCTCTTTGGCGGCGTATTTTGTAGGCCCTGCGT
GCTGGTTTATCTCACTCCGAGAAGCCAAACGCGTTTGCCCGGCGCTCGCT
TCAGCCTAAATTGAACCCCACCATGATGACCACATGGCATGCTCTCGCTT
CCATTTCGAATCCCAGCTCATCGTATGTATCATGATAGCCCCTGTTCTTG
TTTCTAACACACGACCCATCCCCAACCCTTCACCGTCTTGCTCTCGCTAC
ACCCCAACTGGCCACAGCCGCCCAAACATTCGTGAAGGGGGCCTTGTCTC
CCATGTCAGAGGTGCTGGCCGGCGACTTCGACCTTCGAGTGCCTGTGGTG
ACCGCGGTCATCGACTCCTACAATAAATTGTCCCATAGCGATGTCGTCGT
AGAGCTCGTGGTGAGTGCTACCATATGTTACTGCTGCCCTTGGCTGGCCT
GAGAAAAGACGGACTCGCAAACCGGACGGAGGGAAACGCCGTCCACAAGA
GGATTGAGTTGGACCCGTTCCCACTTTCCGTAGACGTTCCGCCTCGCCAG
CCCGTCCTTCGCCTTTTTTTTTAACGTCAACGACGCTGTTGTTGCCGCGT
TTGGCGTTTCCCTCTCGGGGGGGGGGGGGTATTCGTTTGTTGCTTGCCCT
TCCCTCCTGGGGGATGGCCCTCAGCAAGCGCCCTTACTCTTCTTCACGTT
TTGTGCTTAATTATCTCGTTATCGTGAGTTCTTGTCCTTTGCTGTGTCTT
CTTCATCTTGCGAGGTTGTTGTTCGTTCATCAAGGATAAACAGTGGTCAG
TGGTTCACCCTTTATATACTAACAAAATAACTATTTTTGGGTTCGACACA
GCCTCCCACCGATAGCATTCTCCGTGGTTGATCAAGCCCCTAATTAGCGC
CTGGTTTCCCTGTATATTGTCCTTCGCTTCTATTAATAGTGATTTCTTTT
GTAGTGGTACACTCCACTCTGGCCGAGTAATCTTTTGTCGTGGTTCCCTC
CACGTTTTTTTCGCTTTCTCCAGGAAAAGCTTGAAAATCGACTTTGGCGC
GATTCGAACCCTGGGTTATTTTTGAGGAACTAAGGCAATGTAAACCTTGA
GTAATCGCCCACGAGCATCATCAGGTATTCCGCGCCACCGACGACCGGGG
CCTCTTCGCCGACAGGTCCACCAGCACCCTAGGGGTTTAGTCGAGCGGCC
ACTGGTAGTCCACAGAAAAACCATCCTCCTCCCCTCAACCCCTGAGCACC
CCGCCAGGGGAATTGGCTCTCCTACCACCTTGATCCACATTAACCGCGCC
GTCTCATGCATAGTCTCAACATGGGTTCATATCCATGCGTGTCGTTTTTT
CCGTGACCAATACGGCGACAGCGATCGGATCATTGATGACCCTACCCCGG
TGGCCCCTGCGTAAGACCCTGTATCCTTGCACACCAAACACAACTTACAC
CCAGCCTGTAGGCTTCGTGGGCGTCCAAGGTCACGCTGCATTCGAGCATC
ACCACGTGAAGGTCGAACAGGTTAATCCGCAGGCGAGGCACATAGCCACG
GCCAAGAGGTTGACGTGAACATCACCTTTGGCGCGGTGCTTGGTCAATGG
GACCTTAGCGAAACAGTCAATAACCAAAATCCCCATGTCGCCAACTACTC
GGCATGAGGCCGTTGAGGATCAAATGTTGCGTGTTGCGGTAGAGCCCCAT
TGACCATGCACTGCGTCAAAGGGATGTTTCACGTGAAACTGTTAGACGTG
GCATGTGTGCCTGACCTGCAGTTTTATCTGTTCTCCCTGCACACGGTGAT
GCCCATGTGCAGCGTGGCCCTCGATCCCGATGGAGCTCACAGGCTGGGTA
ACACTTTGTATTCTGTGCACAGGGATACATGGTCTTTCGTAGAGGCTACT
AGGGCCACCAATGACCCGATCGCTGATATTGGTCCAGGGCAAAATGGCGC
GCATGTATATCAGCGACCCCCATGTTTCCCTCGCTCAATCCCGTGCTGAG
TCTGTGCGTCAGACGGAAAATGGCGATCAAGGTGGTAGGAGGGTTGATTC
CGCGTGCGGGGTGCCCAGAGGCTAAAGGGAGGAGGGTATATGGTTCGTGG
CTACCAGTTGCCGCTCGACCAAACTCACCCCTGGAGCGCTTGTTCGTGAA
CCTCTCGGGGAACAGACCCCGGTCGCCTGGTGGCGCGGAATACGTCAGGA
TGGTCGTGGACGACTTCTCAAGGTTTGCGTGTCCATATTTCCTCAAAGCT
CAGTCCAAGGTTCGAATCTAATAACTAACAACGGTTTTATATCACGTGGT
GCAGATGGTTTGCTTAGTTGGGTGCCCCGCGTGTTTTCACGCTCAAGCCA
ACGACATCATCATAATCACGTCCGAAGCCCCCCCAAGTCCGCCTCACAGG
TCGTTCTTGGTATAGTGCAGCCCACCCTTCATGCGACTCGCTGAACCCCT
CGAGGTGCTTCGCGCTTGGCGCAAGCAATGTCTGCCTGGTCGGTGAAAGA
AACCCGACGTGCTCCGTCCCTGCATTGTACAGATGCGAAGGTCTATGGTC
ATACGGCTACGACTTTGCACGACATGAATGCACTCCGGAATGCAAGGGTC
TATGGCTATACTACGACCATGCATGATATCGAGTACACCCCCCTCAGTAT
GATCGTTTTCCCGTATTTTGTTGTCTTAGACGGCCGCGTCCACAATGTGC
CCGCTGCTACCGCGATGCCTTCCGAGCACCCAGTCCGTTCTTGCAATTCA
GAGACGCGGACGCAACTTAATAAGGCAGGTTCAACCATGAGCCTCGGTCA
CATGAGCATGACCTTTTCGCTTGAACCTTGAAATAATGCATTGTAGGACC
CGTCGGGAAGGATGAAAGGCTATCTGCACCCGGGCTGCCTGGAAGAGCAC
GGCCCTACCCTGGGTCCGGGAGCAGCTGTTCTTCTCAAAGAGGCGAGCGA
GTTGCGGAAGCAGGGAGTGTGCCATGTTTGAAACTTCGCAAGTACGTGAG
TTTGGATGGACTTGTGCCTTGCTGTACGTTGTCAACTGCTACGGTCACGG
CAATAACTAGAATACTGTCTTGTCGTTGGATGGCGTATCGAGGAATCGAA
ATGGCAGTGTGCACAGCCAAAAGTACAAAATTATCTCACAGCTGATCGTT
TTTAATTTTACACAAATGAGGGTAAGGGAACAGTGTATTGCACTACTTCT
GCTCTACAACTAGCATCGTGGGAGGTCAGATAATGTCTCAATTTTTAGGG
ATAAACGGCGTTGAAATGAAGCTTGCTGTCTGGTACCTACTGTAGTACAA
ACTGCGCTTTTGAGACCACACAGTCGTAAAAACGTCGGAACGTTGGCGAC
TGGTGTTCTGAAGATCCCTGCGGGGTTGTCCACCGCTCGACTGGAGGTGA
TGGTCGCTGTTGAGATGACAGATGACAAGTGCTAACCGTTTTCCAAACGC
ATTTATCCACTTGGAAATGGTTCGCATGTCATTTCCACCCTACGTGCCGC
CAACTTGCGGACAAGACAGTGACAACATCATCGGCACGCCGTGTCACTGC
TTGCACCCCGTCCTCCGCGAACGGGACGTGATGGCTGCAGGTGTCTATCT
TCGTGTCTGGCCCGGGTACTACGCGGCTACTTAATGTGCACCCGGCATGC
GTTCTCGCGGTTTTTCCAGCTGATTCTCCGCTGCCGAGGCCTGCGCGACT
CGACTGGCTGCGGACGTGCGGTGAGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11575:2214..6691+

>mRNA_M-pyrifera_M_contig11575.3263.1 ID=mRNA_M-pyrifera_M_contig11575.3263.1|Name=mRNA_M-pyrifera_M_contig11575.3263.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig11575:2214..6691+ (Macrocystis pyrifera P11B4 male)
TCCTGCATACGTTTCTACATCGCAATTCATTGCAGGGGCCCTGGGCAGGA
CGGCGGCGAGTCCGATGACGATAACGACGAGAGGTTGAGCGACAGAGGTC
AGAGCAAGGGCGAGGCAGGAGGGGGACACTTCAAGAAGGGCGCCTGGCTG
TCGTTGTGCTCCGCGATAGACACCCCCATTCCGGACGAGGGGTCGAGCGA
CGCAAGAGTCCTGCATACGTTTCTACATCGCAATTCATTGCAGGGGCCCT
GGGCAGGACGGCGGCGAGTCCGATGACGATAACGACGAGAGGTTGAGCGA
CAGAGGTCAGAGCAAGGGCGAGGCAGGAGGGGGACACTTCAAGAAGGGCG
CCTGGCTGTCGTTGTGCTCCGCGATAGACACCCCCATTCCGGACGAGGGG
TCGAGCGACGCAAGAGCCGCCCAAACATTCGTGAAGGGGGCCTTGTCTCC
CATGTCAGAGGTGCTGGCCGGCGACTTCGACCTTCGAGTGCCTGTGGTGA
CCGCGGTCATCGACTCCTACAATAAATTGTCCCATAGCGATGTCGTCGTA
GAGCTCGTGCCGCCCAAACATTCGTGAAGGGGGCCTTGTCTCCCATGTCA
GAGGTGCTGGCCGGCGACTTCGACCTTCGAGTGCCTGTGGTGACCGCGGT
CATCGACTCCTACAATAAATTGTCCCATAGCGATGTCGTCGTAGAGCTCG
TGGACCCGTCGGGAAGGATGAAAGGCTATCTGCACCCGGGCTGCCTGGAA
GAGCACGGCCCTACCCTGGGTCCGGGAGCAGCTGTTCTTCTCAAAGAGGC
GAGCGAGTTGCGGAAGCAGGGAGACCCGTCGGGAAGGATGAAAGGCTATC
TGCACCCGGGCTGCCTGGAAGAGCACGGCCCTACCCTGGGTCCGGGAGCA
GCTGTTCTTCTCAAAGAGGCGAGCGAGTTGCGGAAGCAGGGAGTGTCTAT
CTTCGTGTCTGGCCCGGGTACTACGCGGCTACTTAATGTGCACCCGGCAT
GCGTTCTCGCGGTTTTTCCAGCTGATTCTCCGCTGCCGAGGCCTGCGCGA
CTCGACTGGCTGCGGACGTGCGGTGAGTCCGTGTCTATCTTCGTGTCTGG
CCCGGGTACTACGCGGCTACTTAATGTGCACCCGGCATGCGTTCTCGCGG
TTTTTCCAGCTGATTCTCCGCTGCCGAGGCCTGCGCGACTCGACTGGCTG
CGGACGTGCGGTGAGTCC
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