mRNA_M-pyrifera_M_contig11567.3248.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11567.3248.1
Unique NamemRNA_M-pyrifera_M_contig11567.3248.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A835ZB92_9STRA (Propionyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB92_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.530e-37
Identity = 78/146 (53.42%), Postives = 102/146 (69.86%), Query Frame = 3
Query:   51 GAACRLTFDELAWNAASPLIKATVNDTRHVFQFLGHS--GEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEFD 482
            G   ++    + W   S L++ T++  +   Q+ G S  GEGY++   G++Q V+VR+P EQELSRH+LPP V+DHS +LRCPMPG V+SV+V EG  VEEGQ LAVVEAMKMQNVLKA+    V  V C  G+ L+VDAVMMEF+
Sbjct:  577 GKKTKVAVGNVDWPVESVLLQGTLDGEKEALQYFGGSSTGEGYEVAFMGTYQTVIVRTPHEQELSRHLLPPVVVDHSNTLRCPMPGAVISVAVKEGQTVEEGQQLAVVEAMKMQNVLKAEARAVVKSVKCKAGDVLKVDAVMMEFE 722          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A7S2XZ22_9STRA (Propionyl-CoA carboxylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ22_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.810e-30
Identity = 70/153 (45.75%), Postives = 94/153 (61.44%), Query Frame = 3
Query:   33 TVTPEGGAACRLT--FDELAWNAASPLIKATVNDTRHVFQFLG-HSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEFD 482
            T+  E G+    T    +  W   +PL+K   +    V Q+LG    E   LV  G++ +VVVR+PRE EL++H+LPP  +D+S+ L CPMPG VV V V EG  VE GQ L  VEAMKMQN+LKA+    V K+ C  GE+L VD +M+EF+
Sbjct:   26 TIAKEDGSEAPATVRLQDYQWQNKAPLMKGVFDGKDRVVQYLGIKDSETMKLVYQGTYTNVVVRTPREHELAQHMLPPVEVDYSKFLVCPMPGVVVDVMVEEGQEVEIGQELICVEAMKMQNILKAEKKSLVKKINCTKGESLPVDFMMIEFE 178          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A7S1G9V2_9STRA (Propionyl-CoA carboxylase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9V2_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.170e-28
Identity = 73/157 (46.50%), Postives = 96/157 (61.15%), Query Frame = 3
Query:   39 TPEGGAACRLTFDELAWNAASPLIKA---------TVNDTRHVFQFLGHSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEFD 482
            T EGG    +  ++  W   +PL+ A          V D   + Q L  + EG+ L   G+    VVR+P +Q LSRH+LP P +D+S+ L  PMPG +VSV+V EGD+VEEGQ LAVVEAMKMQNVL+A    RV K+  A G TL VD V++EF+
Sbjct:  580 TEEGGPFVSVALEDFDWVPGAPLLTAEARSSAGDDAVGDASLIVQHLAATPEGFKLQFRGAVADAVVRTPAQQALSRHMLPKPEVDYSKLLVSPMPGMLVSVAVAEGDIVEEGQELAVVEAMKMQNVLRAHKRARVGKLPHAAGATLAVDDVIIEFE 736          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A5A8DH08_CAFRO (Uncharacterized protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8DH08_CAFRO)

HSP 1 Score: 119 bits (298), Expect = 5.870e-25
Identity = 63/147 (42.86%), Postives = 96/147 (65.31%), Query Frame = 3
Query:   81 LAWNAASPLIKATVNDTR--------------HVFQFLGHSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEF 479
            ++W  ++PL   + ++ R               + Q L H+ EGY L   G+ + V+VRS R+Q+L+R +LP P +D S+ +  PMPG++V VSV EG++V++GQ +AVVEAMKMQNVL+A  +GR+ +V   PG+TL VD V++EF
Sbjct:  741 VSWGPSTPLFLGSSSEMRVTQSEAADETEPRRAIVQHLDHAAEGYVLSSEGAERQVLVRSMRQQQLARWMLPKPEIDFSKVIVSPMPGKLVDVSVEEGEMVQQGQAVAVVEAMKMQNVLRAPKAGRIGRVAGVPGDTLVVDQVIVEF 887          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: W7TIZ8_9STRA (Propionyl-CoA carboxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIZ8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 9.560e-25
Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 3
Query:   66 LTFDELAWNAASPLIKATVNDTRHVFQFLGHSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEF 479
            +T  ++ W    PL +A ++      Q L     GYDL   G++  V V  PREQ L +H+LP   +D+S+ L+CPMPGQ++S++V EGDVVE GQ LA+VEAMKMQN+L+A     + K+    G +L+VD V++EF
Sbjct:  640 VTVRDIDWELGVPLFRAHMDGGLRTLQCLASRTLGYDLFYGGAYLSVEVYEPREQALLKHMLPVLEVDNSKYLQCPMPGQLISLAVQEGDVVEVGQELAIVEAMKMQNILRAPKKTTIQKLRAEIGSSLKVDQVILEF 777          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A7R9VJ98_9STRA (Propionyl-CoA carboxylase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VJ98_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.180e-24
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = 3
Query:   66 LTFDELAWNAASPLIKATVND-----TRHVFQFLGHSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEFDFD 488
            +   +  W    PL  A++ +     T    Q L    EG+ L + G+   V+ R+PR+ EL++H++P P +D+S++L  PMPGQ+VSV+V  G  VE GQ L VVEAMKMQN+L++   G+++++    G TL+VD ++++F+ D
Sbjct:   50 IVIGDCGWEPEDPLFDASLAEDDGESTTVCCQHLERLPEGFKLQLEGAVADVICRTPRQHELAKHMIPKPKVDYSKALVSPMPGQLVSVNVTVGQEVEIGQELCVVEAMKMQNLLRSTRKGKIAEICFEAGATLKVDDIILKFEDD 195          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A2W4UMX6_9PROT (Propionyl-CoA carboxylase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2W4UMX6_9PROT)

HSP 1 Score: 115 bits (289), Expect = 6.220e-24
Identity = 61/131 (46.56%), Postives = 83/131 (63.36%), Query Frame = 3
Query:   87 WNAASPLIKATVNDTRHVFQFLGHSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEF 479
            W   SPL +A ++        +   G G  +   G++  V V +PR  EL+R ++P    D S+ L CPMPG VVS++V EGD VE GQPLA VEAMKM+N+L+A+ SG V KVL   G++L VDAV++EF
Sbjct:  540 WRVGSPLFEADIDGITRSLS-IERQGSGLKISTRGANHRVRVLTPRAAELARFMIPKVAPDMSKYLLCPMPGLVVSIAVAEGDKVEAGQPLATVEAMKMENILRAEKSGTVGKVLAKAGDSLAVDAVILEF 669          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A024T8T8_9STRA (Propionyl-CoA carboxylase alpha chain, mitochondrial n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024T8T8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 6.960e-24
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 3
Query:   75 DELAWNAASPLIKATVNDTRHVFQFLGHSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEFD 482
            ++  W+   PL  A ++  +   Q L    EG+ +   G+   V+VRSP+E ELS H+ P P +D SR + CPMPG +VSV+V  GD V+ GQ +AVVEAMKMQNV++A   G++  VL   G  L+VD V++EF+
Sbjct:  598 NDFDWSPKLPLFSAEISSKQRALQVLKKLPEGFKIQHHGAIHDVIVRSPKEHELSVHMKPKPKVDLSRFVLCPMPGLLVSVAVQVGDTVQIGQEVAVVEAMKMQNVIRASKKGKIKAVLHPAGAALKVDEVIVEFE 733          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A4V0YHW3_9SPHN (Propionyl-CoA carboxylase n=2 Tax=Sphingomonadales TaxID=204457 RepID=A0A4V0YHW3_9SPHN)

HSP 1 Score: 115 bits (288), Expect = 8.310e-24
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 3
Query:   87 WNAASPLIKATVNDTRHVFQFLGHSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEFD 482
            W    PLIKA +++     Q +   G  + L   G+   V V      +LSRH++     D S+ L CPMPG + +++VGEGD VE GQPLAVVEAMKM+N+L+A+ SGRV  V   PGE+L VDAV++EF+
Sbjct:  539 WEPGQPLIKARIDERSRTVQ-IARKGRQWQLTSRGASHRVDVLPAHVADLSRHMIEKIPPDLSKYLICPMPGLLTALNVGEGDAVEAGQPLAVVEAMKMENILRAEKSGRVKTVSAKPGESLAVDAVILEFE 669          
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Match: A0A7Z8L9G6_9RHOB (Propionyl-CoA carboxylase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7Z8L9G6_9RHOB)

HSP 1 Score: 114 bits (286), Expect = 1.490e-23
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 3
Query:   63 RLTFDELAWNAASPLIKATVNDTRHVFQFLGHSGEGYDLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSVGEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMMEFD 482
            R+T D   W    PL +  V+D   V +    SG GY L + G+   V V SPR+ EL+ +++     D S+ L CPMPG VVS++V EGD V EGQPLA +EAMKM+N+L+A   GRV+++  APG +L VD V+MEF+
Sbjct:  530 RITSD---WLPGQPLARLMVDDQALVMKVARLSG-GYRLRLRGADLKVHVFSPRQAELAANMIEKQPPDTSKLLLCPMPGMVVSIAVSEGDEVHEGQPLATIEAMKMENILRADRKGRVARINAAPGASLAVDDVIMEFE 665          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11567.3248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB92_9STRA3.530e-3753.42Propionyl-CoA carboxylase n=1 Tax=Tribonema minus ... [more]
A0A7S2XZ22_9STRA5.810e-3045.75Propionyl-CoA carboxylase n=1 Tax=Fibrocapsa japon... [more]
A0A7S1G9V2_9STRA4.170e-2846.50Propionyl-CoA carboxylase n=1 Tax=Bicosoecida sp. ... [more]
A0A5A8DH08_CAFRO5.870e-2542.86Uncharacterized protein n=4 Tax=Sar TaxID=2698737 ... [more]
W7TIZ8_9STRA9.560e-2544.20Propionyl-CoA carboxylase n=2 Tax=Monodopsidaceae ... [more]
A0A7R9VJ98_9STRA5.180e-2438.36Propionyl-CoA carboxylase n=1 Tax=Pseudictyota dub... [more]
A0A2W4UMX6_9PROT6.220e-2446.56Propionyl-CoA carboxylase n=2 Tax=Alphaproteobacte... [more]
A0A024T8T8_9STRA6.960e-2444.12Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A4V0YHW3_9SPHN8.310e-2446.21Propionyl-CoA carboxylase n=2 Tax=Sphingomonadales... [more]
A0A7Z8L9G6_9RHOB1.490e-2346.43Propionyl-CoA carboxylase n=1 Tax=Rhodobacteraceae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11567contigM-pyrifera_M_contig11567:1234..5121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue4.8e-23
Seed eggNOG ortholog157072.XP_008880784.1
KEGG rclassRC00064,RC00090,RC00097,RC00367,RC00609,RC00942
KEGG koko:K01965,ko:K01968,ko:K14755
KEGG ReactionR00910,R00912,R01164,R01859,R01991,R03286,R04138
KEGG Pathwayko00280,ko00330,ko00340,ko00410,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00330,map00340,map00410,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CoA carboxylase activity
EggNOG OGsCOG4770@1,KOG0238@2759
Ec32 ortholog descriptionpropionyl-CoA carboxylase, alpha subunit
Ec32 orthologEc-01_010970.1
EC6.3.2.11,6.4.1.3,6.4.1.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size1408
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11567.3248.1prot_M-pyrifera_M_contig11567.3248.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11567 2151..5098 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.6939285-UTR-M-pyrifera_M_contig11567:1233..21501622815672.6939285-UTR-M-pyrifera_M_contig11567:1233..2150Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11567 1234..2150 -
1692277515.0855255-UTR-M-pyrifera_M_contig11567:1233..21501692277515.0855255-UTR-M-pyrifera_M_contig11567:1233..2150Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11567 1234..2150 -
1622815672.7626653-UTR-M-pyrifera_M_contig11567:5098..51211622815672.7626653-UTR-M-pyrifera_M_contig11567:5098..5121Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11567 5099..5121 -
1692277515.1335914-UTR-M-pyrifera_M_contig11567:5098..51211692277515.1335914-UTR-M-pyrifera_M_contig11567:5098..5121Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11567 5099..5121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.704966-CDS-M-pyrifera_M_contig11567:2150..23361622815672.704966-CDS-M-pyrifera_M_contig11567:2150..2336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11567 2151..2336 -
1692277515.0982556-CDS-M-pyrifera_M_contig11567:2150..23361692277515.0982556-CDS-M-pyrifera_M_contig11567:2150..2336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11567 2151..2336 -
1622815672.7189622-CDS-M-pyrifera_M_contig11567:3785..39231622815672.7189622-CDS-M-pyrifera_M_contig11567:3785..3923Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11567 3786..3923 -
1692277515.1080031-CDS-M-pyrifera_M_contig11567:3785..39231692277515.1080031-CDS-M-pyrifera_M_contig11567:3785..3923Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11567 3786..3923 -
1622815672.731613-CDS-M-pyrifera_M_contig11567:4434..45371622815672.731613-CDS-M-pyrifera_M_contig11567:4434..4537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11567 4435..4537 -
1692277515.1164892-CDS-M-pyrifera_M_contig11567:4434..45371692277515.1164892-CDS-M-pyrifera_M_contig11567:4434..4537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11567 4435..4537 -
1622815672.7483494-CDS-M-pyrifera_M_contig11567:5057..50981622815672.7483494-CDS-M-pyrifera_M_contig11567:5057..5098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11567 5058..5098 -
1692277515.1262226-CDS-M-pyrifera_M_contig11567:5057..50981692277515.1262226-CDS-M-pyrifera_M_contig11567:5057..5098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11567 5058..5098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11567.3248.1

>prot_M-pyrifera_M_contig11567.3248.1 ID=prot_M-pyrifera_M_contig11567.3248.1|Name=mRNA_M-pyrifera_M_contig11567.3248.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
MALTVTPEGGAACRLTFDELAWNAASPLIKATVNDTRHVFQFLGHSGEGY
DLVMAGSHQHVVVRSPREQELSRHILPPPVLDHSRSLRCPMPGQVVSVSV
GEGDVVEEGQPLAVVEAMKMQNVLKAQMSGRVSKVLCAPGETLRVDAVMM
EFDFD*
back to top

mRNA from alignment at M-pyrifera_M_contig11567:1234..5121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11567.3248.1 ID=mRNA_M-pyrifera_M_contig11567.3248.1|Name=mRNA_M-pyrifera_M_contig11567.3248.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3888bp|location=Sequence derived from alignment at M-pyrifera_M_contig11567:1234..5121- (Macrocystis pyrifera P11B4 male)
GCGGGACATCGACCGGTTTGCCGATGGCCTTGACGGTTACACCAGAGGGT GGGGCCGCTTGCAGGTAATACAAAGAATGTTTATTTTGCTGTTTGTGCCG CACCGTCCTTGAATTTTTATTTGCAAGTAGAGAAGGAAGGGAGGGAGGGA CGTCGTCTTACGCGACTGTGCAGGCAGCGAGGACTCTGTCTGATGTAAGA GCGGTTTCAGCAAGCGGTGCACACCGCGCGAAGGTAGAGGTCCTTAGCGT CACCTTGTGCAGGGTGCAGGGTGCGTTCACAGGGGTCGACATTCCACCTG GTCAGTGTGTCCCGAGACACGCACTAGCAACAAATGCGATTCTCCGAGCT CTCCCCGAGGAAAACGTCGAGGAACATTGATTTCCTCGGCTCGTCCTTCG CCGCGACTACGCACCCCAAAAAACTCTCCCGCTGCATTTTTGGTGCAGTA TGGTTGCTGCCATCGAAACGTTTGTATTTGTCAACGAAAACAACCACGCG TGGGTTTACTTTCCTCTGTGCGCCGCTCTGCGTGCCGCTACTCGGGCACT TGAAACACACGGGGCTTGCTTCGACCACCTCCAGGCTGACCTTCGACGAG CTCGCGTGGAATGCGGCATCCCCTTTGATTAAGGCCACCGTCAACGACAC GCGACACGTATTCCAGTTCCTTGGGCACAGTGGGGAGGTAGGCGTATGTC CATACCGATACCTATCAAGGTGCCAAGATTAATTGCACGGCGCTGCTGTT TTACTGCATTGTAGTCCGGTAGCGTACTGTAACGTAATGTACTGTGTGAT ATATACAGTACAACCAGTCTGTGCCAACTGCTACTGTACAGTTGTCGTGG TGTGTATCTGACAAAAACACAATGGTGGGCCCGCTTTACTGCTCAGCCTG GACCTCAGATTTCCCCAAGGGTCGCAACCCCGTTTGGTCCTCGCTGGTTA TCGTGTATCCCCAACGTACTGTCCGTAGATGGTGAGAACGAAATGCAGGC GTTCTCAACTCTGCCACGTATTATCTTCAAGCTGCCGCACGCTGGCCCTC TTCCTACCCGAAAACCGTTTGACGCTCCTCAAGATGCCACACGCTGATCC TACAGCAGTTCCTGCTAAAGCGCCAGCGAAGCGTTTTGAACGATGCTCAA GCTGCAATACCCCGACCCTTATTTCCGCCCGCAACTGCATGCAATCAGGG CTACGACCTAGTCATGGCCGGCTCGCACCAGCACGTTGTCGTTCGATCTC CTCGGGAGCAAGAGCTTTCACGTCACATCCTACCCCCCCCGGTGTTAGAC CATTCTCGGAGCCTCCGGTGTCCCATGCCAGGGCAGGTGAGCCGCGGTTC GCAAGCTTGCTAGGTGTAGGTGGAGGCATGGTGCGGTACACAGAGGGGCG AATTTTGGGCCGAAACATTTGCGATTTCGACGAGCGCTTGAAAAGATTGC GCTGGTCTTAAACATTATGCGCATCTTGTCATGATGAGTTTCTAAAAATG GATCTCAGGCCGATGCTAATGGAAACACTACCCTGCAATGATTATTTCCC GTAAACTATTGTGTACCAGGTGTATTAATGAAAAGGGGTACCTGGTATTC ATTAGTTTGTTGTTTTGGGGACACGTAGATATGTGTACAGGGGTGCTCGT TTGAGAATGCCCTATTTTTTTTTTGTTGGCCCTGTAAAGCTGTAGAGGGT AAAGGAGGTGATAATCGAATATTGTGGAAGTGACTATTTTTTCTCCTCTT TTTTTTCGAGGCGTCAGATAGGGTCCATAAAAATTGCGGTCGGTGATAGT TCGGCAGGAAATACCCGAAATATGATCCCAATCTCATCTGTCTTCCGATG GTGTTTACGTTGTTGTGCCTAGACTGTAGGCAGTGCTGTAGGAGATCCCT CCGGTGGGTTGCGCCATCAATATCTCACCATCGCTTTTTGGGTGGGGTTT TGGTACTAAGCTTGTCGTTTTGAGTGGCCAGAGAAACTCTGCTTTAGGTC CCCCCCCTGCCCTTACCGTACCCACCGTACATGGCAACGGCTCGGTGACA TTCCCACCGTATGGCCGCTTGCAGTTGTGAACCCCTCAATCGTGGCACTC TATACGATTGTCGCAGAATTGCGCTTTTTGTGTATGCAAGCGTTTTTTCC GGTTTGCCAGTACATGGGGCGTTTTTCCCTCCCCCCTATGATCGCCCTGG TGCGCGTCTTCGAGCGCCTGCGGTTCAGGCTGCCCGCGGTGACGGGACGG TAGGCCGAGCAAGTGGGCGTTGCGGTTTTTGCCGATAGTCATCACATTTT TTTGCCGATAGTCATCACATTTTTTTGCCGCAATGAAGATGCATTGAAGA GGTTTGATACTGTAGTGTGACATACTGTAGTGTGGACTATAAACCATTTC TTCGAAGCAGGGTCAGATCGTCAGCACTACTGCCCCCCCCCCCCTCCCCC CCAACCCCTTCGGAGTGTCTGCCTGGTAGGTGAAAACCGGACGTGCTCCG TCCCGGCTTTGTAGGTGTGCGAGGGTCTATGACCATACGACCACGGCCAT GCATGATAATGAGTACACCCCCCCCCCCTGGTCGATGACAACCCGACGCG CGTCCCGGCATTGTAGGGATGCGAGGATCTATGGTCATACGACTACGGCC ATTCATGATAATGAGTACACTCCCCCCCCCTCCGCTCCGTCTCGAAAGGG ATGCGTGTGTCAACGGTCAAACGACTAGGGCATGCAACAAATAATTAACC CCGCCCGACCCCCCACCCCCGCTCGTTCGCTGCAGGTGGTCTCTGTGTCT GTAGGCGAGGGGGATGTGGTCGAGGAAGGTCAGCCGCTAGCGGTCGTGGA GGCCATGAAGATGCAGAACGTGCTCAAGGCGCAGATGAGCGGGAGGGTAT CGAAGGTGCTTTGCGCGCCGGGCGAGACTCTGCGCGTCGACGCCGTGATG ATGGAGTTCGACTTTGACTAAGGAGGGGACTGGGCCCGTCACGTGTGTGT ACCATCCTGTGTCCGTCGGTAAACTATGCCTGATCCGTCGGTAGTCTTGC TGGTCTTCACACGGAGGATTTTGTGCAAACAAAAAAATGAGCACGTCGCC TTTGAGTTCTCCGGGCTTCGAGTAGATGACAGTCACTATTGCAAAAGCTG CGTGATTCATCGGCCGTGCGTTCTTTGGTTGAAGTTGGCGGGTGAAAGAT GACTTACCCAACCGAAACGATGGTCATTTTTACCCTCGCTACCCTAGTGA CTTGTGACATGGGGGAGATGCCGTGGGTGCCGTGGTTCGCTGTTATGAGG AAACGTAATATTTTCCGTCCTGATGCGCTGCCGCCTGCAGTAGCGCCTGA TATTGCATGCAAACCAGGCTTGTTCATGTTTTACGTTGGTGTTTTTCGCT TCTTGTTATTTTTGTTGTTTTTGTTGCATGGAGCCGGTTGCAGCAGTAGT TAGTGCCTTCGCCTGCAAACATATCGGACGCCGCGTGGTTTTGTGAGGGC TTGGAGAGCCTTGTGTTGATAGCCAGATTAGATGGACGTTGAGCTGGGGT CTATTGCCACCTCAACGAGTCGCGTCCTGTAAAAGCCACCATTGCTTTCA CACTTTTTGGCACACGTCGAATCATCAAATGGCCGGGGAGACGAGAGTGA GAGACCTCTTTCTACCTCCTTTGGATCTTAACAATATTTTGCCTCCAATA ATGTTGTCCGATTCGACTTGGAAATGAAAAATCGGCGGCAAATGGGAAAA ATCATGGAGGGTTTTCCCGGTTTGTAACCAATCTCAGGTATCATACCAGG CACATATTTTTGGCTTCATTGTTTTTTTCAGTGGTTAATGAGCTTTTCTT TGTATTTTTAGTATTGTATGACACGTAGAAAATTGTTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11567:1234..5121-

>mRNA_M-pyrifera_M_contig11567.3248.1 ID=mRNA_M-pyrifera_M_contig11567.3248.1|Name=mRNA_M-pyrifera_M_contig11567.3248.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig11567:1234..5121- (Macrocystis pyrifera P11B4 male)
ATGGCCTTGACGGTTACACCAGAGGGTGGGGCCGCTTGCAGATGGCCTTG
ACGGTTACACCAGAGGGTGGGGCCGCTTGCAGGCTGACCTTCGACGAGCT
CGCGTGGAATGCGGCATCCCCTTTGATTAAGGCCACCGTCAACGACACGC
GACACGTATTCCAGTTCCTTGGGCACAGTGGGGAGGCTGACCTTCGACGA
GCTCGCGTGGAATGCGGCATCCCCTTTGATTAAGGCCACCGTCAACGACA
CGCGACACGTATTCCAGTTCCTTGGGCACAGTGGGGAGGGCTACGACCTA
GTCATGGCCGGCTCGCACCAGCACGTTGTCGTTCGATCTCCTCGGGAGCA
AGAGCTTTCACGTCACATCCTACCCCCCCCGGTGTTAGACCATTCTCGGA
GCCTCCGGTGTCCCATGCCAGGGCAGGGCTACGACCTAGTCATGGCCGGC
TCGCACCAGCACGTTGTCGTTCGATCTCCTCGGGAGCAAGAGCTTTCACG
TCACATCCTACCCCCCCCGGTGTTAGACCATTCTCGGAGCCTCCGGTGTC
CCATGCCAGGGCAGGTGGTCTCTGTGTCTGTAGGCGAGGGGGATGTGGTC
GAGGAAGGTCAGCCGCTAGCGGTCGTGGAGGCCATGAAGATGCAGAACGT
GCTCAAGGCGCAGATGAGCGGGAGGGTATCGAAGGTGCTTTGCGCGCCGG
GCGAGACTCTGCGCGTCGACGCCGTGATGATGGAGTTCGACTTTGACTAA
GTGGTCTCTGTGTCTGTAGGCGAGGGGGATGTGGTCGAGGAAGGTCAGCC
GCTAGCGGTCGTGGAGGCCATGAAGATGCAGAACGTGCTCAAGGCGCAGA
TGAGCGGGAGGGTATCGAAGGTGCTTTGCGCGCCGGGCGAGACTCTGCGC
GTCGACGCCGTGATGATGGAGTTCGACTTTGACTAA
back to top