mRNA_M-pyrifera_M_contig11565.3242.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11565.3242.1
Unique NamemRNA_M-pyrifera_M_contig11565.3242.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11565.3242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11565contigM-pyrifera_M_contig11565:3762..4345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.3948843-CDS-M-pyrifera_M_contig11565:3761..40821622815672.3948843-CDS-M-pyrifera_M_contig11565:3761..4082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11565 3762..4082 +
1692277514.9549363-CDS-M-pyrifera_M_contig11565:3761..40821692277514.9549363-CDS-M-pyrifera_M_contig11565:3761..4082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11565 3762..4082 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.4082813-UTR-M-pyrifera_M_contig11565:4082..43451622815672.4082813-UTR-M-pyrifera_M_contig11565:4082..4345Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11565 4083..4345 +
1692277514.96643-UTR-M-pyrifera_M_contig11565:4082..43451692277514.96643-UTR-M-pyrifera_M_contig11565:4082..4345Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11565 4083..4345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11565.3242.1prot_M-pyrifera_M_contig11565.3242.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11565 3762..4082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11565.3242.1

>prot_M-pyrifera_M_contig11565.3242.1 ID=prot_M-pyrifera_M_contig11565.3242.1|Name=mRNA_M-pyrifera_M_contig11565.3242.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
PKQARKKKVHAFLRTGDGCHVGADPPLEQHARTTLPCAGTQTHFPSVHLK
KVGNCLKAELVQPHNNMYVRTHNACGPKSSCYCPANLGTLYSNKGSHWPV
VSFTRE*
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mRNA from alignment at M-pyrifera_M_contig11565:3762..4345+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11565.3242.1 ID=mRNA_M-pyrifera_M_contig11565.3242.1|Name=mRNA_M-pyrifera_M_contig11565.3242.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=584bp|location=Sequence derived from alignment at M-pyrifera_M_contig11565:3762..4345+ (Macrocystis pyrifera P11B4 male)
CCCAAACAAGCACGAAAAAAAAAAGTTCACGCGTTTTTACGGACGGGCGA
TGGATGTCATGTCGGTGCCGATCCGCCCCTGGAACAGCACGCACGAACAA
CCCTGCCCTGCGCAGGTACTCAAACACACTTTCCTTCAGTGCACTTGAAA
AAGGTCGGCAACTGCCTAAAAGCAGAGCTCGTTCAGCCGCATAACAATAT
GTACGTGCGCACACACAATGCTTGTGGTCCGAAATCATCGTGTTATTGTC
CTGCTAACCTTGGTACTCTTTATAGCAACAAGGGGAGTCACTGGCCTGTA
GTATCCTTCACGAGGGAATGAACGTAGAAAACGCGCGACTGATGCTATCC
CGCAGCCTGCGAAAGTCGAACATTTTCAGGGACCTGCACGGGTCATTGCC
CGACTCGCGGGTCGCGTCAGGAAGCTTTTGAAAATATCTCGGGTCGGGTC
GGGTCAGGAGGTTTTCAAAATCCCACGGGGTGGGTCGGGTCACCCTTACC
CGACCCGACCCGACCCGACCCGACCCGGGAGGTTTGGCCCCGACCCGGGA
GGTTTGGCCCGACCCGGGAGGTTTGACCCGACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11565:3762..4345+

>mRNA_M-pyrifera_M_contig11565.3242.1 ID=mRNA_M-pyrifera_M_contig11565.3242.1|Name=mRNA_M-pyrifera_M_contig11565.3242.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig11565:3762..4345+ (Macrocystis pyrifera P11B4 male)
CCCAAACAAGCACGAAAAAAAAAAGTTCACGCGTTTTTACGGACGGGCGA
TGGATGTCATGTCGGTGCCGATCCGCCCCTGGAACAGCACGCACGAACAA
CCCTGCCCTGCGCAGGTACTCAAACACACTTTCCTTCAGTGCACTTGAAA
AAGGTCGGCAACTGCCTAAAAGCAGAGCTCGTTCAGCCGCATAACAATAT
GTACGTGCGCACACACAATGCTTGTGGTCCGAAATCATCGTGTTATTGTC
CTGCTAACCTTGGTACTCTTTATAGCAACAAGGGGAGTCACTGGCCTGTA
GTATCCTTCACGAGGGAATGACCCAAACAAGCACGAAAAAAAAAAGTTCA
CGCGTTTTTACGGACGGGCGATGGATGTCATGTCGGTGCCGATCCGCCCC
TGGAACAGCACGCACGAACAACCCTGCCCTGCGCAGGTACTCAAACACAC
TTTCCTTCAGTGCACTTGAAAAAGGTCGGCAACTGCCTAAAAGCAGAGCT
CGTTCAGCCGCATAACAATATGTACGTGCGCACACACAATGCTTGTGGTC
CGAAATCATCGTGTTATTGTCCTGCTAACCTTGGTACTCTTTATAGCAAC
AAGGGGAGTCACTGGCCTGTAGTATCCTTCACGAGGGAATGA
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