mRNA_M-pyrifera_M_contig115646.3241.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115646.3241.1
Unique NamemRNA_M-pyrifera_M_contig115646.3241.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: A0A7S0W7H3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W7H3_9CRYP)

HSP 1 Score: 87.0 bits (214), Expect = 1.210e-17
Identity = 60/178 (33.71%), Postives = 85/178 (47.75%), Query Frame = 1
Query:    4 VGDRKCLATKLISPSVVACVVPPNAGGPHRVAVATAGKVSPASPA--------ASFTYDAAVAQTVTPSRG--NAGSVVRIDVQSLGLLDFQPTAYIDGRPCTATKWLSPTAVSCMVPEGTGMDLSVAVVVDGQSAVMH---NAFSYVEPVVESVHPRSGSPNGGTVVTVRGHGICSS 498
            VG   C + +  S S V CV PP  G    V V   G  +P            +SF YD  V ++V P+ G    G  VR+   + G         + G  C  ++W+S T  +C+VP+G G++  VA V   +SA      + FSY  PVV+SV P +G+P GG +VT+ G    SS
Sbjct:    8 VGGVPCSSARWRSESTVTCVAPPGVGAAAPVRVELDGLSTPPCEHPGRADECHSSFQYDPPVVRSVAPNHGPTTGGYTVRLAGDNYGTSPSSVRLSVGGEACDRSRWVSNTMATCVVPQGVGVERVVAEVEGQRSASPPGDGDVFSYDPPVVDSVKPSAGNPEGGQLVTLEGRNFGSS 185          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: A0A7S0TYU6_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TYU6_HEMAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.120e-14
Identity = 59/178 (33.15%), Postives = 82/178 (46.07%), Query Frame = 1
Query:    4 VGDRKCLATKLISPSVVACVVPPNAGGPHRVAVATAGKVSPASP-------AASFTYDAAVAQTVTPSRG--NAGSVVRIDVQSLGLLDFQPTAYIDGRPCTATKWLSPTAVSCMVPEGTGMDLSVAVVVDGQSAVMHNA----FSYVEPVVESVHPRSGSPNGGTVVTVRGHGICSS 498
            VG+  C + +  S + V CV PP  G    V V   G  SP           +SF YD  V ++V P+ G    G  V +   + G         + G  C  + W+S T   C+VP G G++  VA V +GQ +   N     FSY  PVV SV P +G+P GG +VT+ G    +S
Sbjct:  337 VGNVPCSSARWESETTVTCVAPPGVGAAMPVRVELNGLSSPPCEHPGRGGCPSSFQYDLPVIRSVEPNHGPTTGGYTVSLAGSNYGTSPTSIRLSVGGEACDRSSWVSNTMAKCVVPAGVGVERVVAEV-EGQRSDGSNGDGDVFSYDPPVVTSVRPSAGNPEGGQLVTLEGRNFGAS 513          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: F4PJ07_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PJ07_CAVFA)

HSP 1 Score: 65.1 bits (157), Expect = 5.250e-9
Identity = 46/159 (28.93%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   37 ISPSVVACVVPPNAGGPHRVAVATAGKVSPASPAASFTYDAAVAQTVTPSR--GNAGSVVRIDVQSLGLLDF--------QPTAYIDGRPCTATKWLSPTAVSCMVPEGTGMDLSVAVVVDGQSAVMHNAFSYVE-PVVESVHPRSGSPNGGTVVTVRG 480
            +S S++ C VPP  G    ++++  G++   S    F Y       V  S   GN  ++   +     ++D         Q +  I    C++ +W+    V C VP+G G DLS+ +VV GQS+  +N F+Y + P++ES+ P  G  +  T VT+ G
Sbjct: 1404 VSSSIIHCQVPPGIGENIPISISIGGQMVNGS----FNYTGPTLDNVKYSELAGNNITIKGKNFIPASMVDKINQEGQTPQNSVSIASTRCSSVQWIDENTVICKVPDGDGKDLSINIVVGGQSSPSNNYFTYKKKPILESIDPNKGKMSSQTDVTLVG 1558          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: L1K274_GUITC (PDZ domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K274_GUITC)

HSP 1 Score: 60.5 bits (145), Expect = 1.960e-7
Identity = 42/114 (36.84%), Postives = 57/114 (50.00%), Query Frame = 1
Query:    4 VGDRKCLATKLISPSVVACVVPPNAGGPHRVAVATAGKVSPASPAASFTYDAAVAQTVTPSRG--NAGSVVRIDVQSLGLLDFQPTAYIDGRPCTATKWLSPTAVSCMVPEGTG 339
            VG+  C  +  +S S  AC+VP   G    V V    K S A+    F+Y+A V ++  P  G   AG  V I  ++ G +D QP AY+ GR C  T W+S + V C  P G G
Sbjct:  604 VGNVTCKRSVWLSSSSSACMVPRGMGWNLPVTVDL--KASSATLEGKFSYEAPVIESYHPRNGAPRAGFWVTITGRNFGHVDTQPVAYLAGRVCLETYWISDSRVLCRGPPGVG 715          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: A0A6T7TMM8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A6T7TMM8_9CRYP)

HSP 1 Score: 59.7 bits (143), Expect = 3.600e-7
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 1
Query:    4 VGDRKCLATKLISPSVVACVVPPNAGGPHRVAVATAGKVSPASPAASFTYDAAVAQTVTPSRG--NAGSVVRIDVQSLGLLDFQPTAYIDGRPCTATKWLSPTAVSCMVPEGTG 339
            VG+  C  +  +S S  AC+VP   G    V V    K S A+    F+Y+A V ++  P  G   AG  V I  ++ G +D +P AY+ GR C  T W+S + V C  P G G
Sbjct:  608 VGNATCKRSVWLSSSSSACMVPRGMGWNLPVTVDL--KTSSATLEGRFSYEAPVIESYHPRNGAPRAGFWVTISGRNFGHVDTRPVAYLAGRVCLETYWISDSRVLCRGPPGVG 719          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: A0A7S0W3B7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W3B7_9CRYP)

HSP 1 Score: 55.8 bits (133), Expect = 2.150e-6
Identity = 50/167 (29.94%), Postives = 71/167 (42.51%), Query Frame = 1
Query:   19 CLATKLISPSVVACVVPPNAGGPHRVAV-------ATAGKVSPASPAASFTYDAAVAQTVTPSRGNAGSVVRIDVQSLGLLDFQPTAYID-GRPCTATKWLSPTAVSCMVPEGTGMDLSVAVVVDGQSAVMHNAFSYVEPVVESVH---PRSGSPNGGTV--VTVRG 480
            C AT+ +S S + C VPP  G    V V       A  G  + +SP         V     P  G    V  ++ +S G  D  P   I     C+AT+W+S +A+ C VP G G++  V V+       +  AF+Y  P + +V    P   +P  G    VTV G
Sbjct:   18 CSATRWVSDSAIRCTVPPGLGINTEVRVLAYNGVGALLGAFNYSSPRI-HNVSTVVPAPPAPPDGPPREVT-VNGESFGATDSTPVVLIGPASSCSATRWVSDSAIRCTVPPGLGINTEVRVLAYNGVGALLGAFNYSSPRIHNVSTVVPAPPAPPDGPPREVTVNG 182          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: A0A521KEL4_9CHLR (Cell shape-determining protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521KEL4_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 3.660e-6
Identity = 45/165 (27.27%), Postives = 76/165 (46.06%), Query Frame = 1
Query:    7 GDRKCLATKLISPSVVACVVPPNAGGPHRVAVATAGKVSPASPAASFTYDAAVAQTVTPSR--GNAGSVVRIDVQSLGLLDFQPTAYIDGRPCTATKWLSPTAVSCMVPEGTGMDLSVAVVVDGQSAVMHNAFSY---VEPVVESVHPRSGSPNGGTVVTVRGHG 486
            G+       ++SP+ +    P  +G  +   +   G  +  S   +FT   +       S+  G+AG+   + +   G L   P+  I G   T+   +S T ++ +VP GT +  +  +  DG SA      +     +P+V SV P +GSP+GGTVVT+ G G
Sbjct:   77 GNAYSPLVTVVSPTQIVATTPVGSGVGNVTVINPDGTAATTSYPFTFTNGTSPVSITGLSQVTGSAGTAT-VYITGTGFLP-NPSVTIGGITVTSVGLVSSTLIAAVVPTGTSLATATVLNTDGTSASFSGGPTTNPSAQPIVSSVSPSTGSPSGGTVVTITGSG 239          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: A0A7S0MZH9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MZH9_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 8.860e-6
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1
Query:  163 VAQTVTPSRGN--AGSVVRIDVQSLGLLDFQPTAYIDGRPCTATKWLSPTAVSCMVPEGTGMDL 348
            V  +V P  G    G+VV I  ++ G +    TA I G+PC ATKWLSP A+ C+VP GTG  L
Sbjct:  113 VVTSVHPPHGPRVGGTVVLIRGRNFGKVGTLLTATIGGQPCDATKWLSPEALHCLVPRGTGRRL 176          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: UPI000644D3C9 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D3C9)

HSP 1 Score: 54.3 bits (129), Expect = 2.700e-5
Identity = 53/182 (29.12%), Postives = 81/182 (44.51%), Query Frame = 1
Query:   37 ISPSVVACVVPPNAGGPHRVAVATAGKVSPA---SPAASFTYDAAVAQTVTPSRGNAGSVVRIDVQSLGLLDFQPTAYID---------GRPCTATKWLSPTAVSCMVPEGTGMDLSVAVVVDGQSAVMHNAFSYVEPVVESVHPRSGSPNGGTVVTVRGHGICSSVLLPPA--IFLGNATC 540
            ++ SV+   VPP  G    + V    + + A   S A SF Y+A    +VTPS    G   RI +     +       ID         G  CT   W+S + ++C V  G G +LS+ VVV GQS+V +  FSY  P + ++     S   G V+T+ G+    + + P    + +  A C
Sbjct: 2180 LNSSVIYGQVPPGIGCNQSIVVWIGAQNNTAGNGSLAFSFCYNAPNVSSVTPS-DTPGE--RITIFGANFVPANANFTIDNTTNYVVINGNNCTDVDWISSSNLTCEVAAGIGRNLSLTVVVGGQSSVDNVTFSYNPPNITTLDM---SKTDGQVITINGYNFVPTDIDPTESNVTIAGAAC 2355          
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Match: A0A2D5AZZ2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AZZ2_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 4.860e-5
Identity = 44/156 (28.21%), Postives = 67/156 (42.95%), Query Frame = 1
Query:   37 ISPSVVACVVPPNAGGPHRVAVATAGKVSPASPAASFTYDAAVAQTVTPSRGNAGSVVRIDVQSLGLLDFQP---TAYIDGRPCTATKWLSPTAVSCMVPEGT-GMDLSVAVVVDGQSAVMHNAFSYV--EPVVESVHPRSGSPNGGTVVTVRGHG 486
            ++ S +   +PP+  G         G    +  A  F Y       +TP+ G+A     + V   G L+      +   DG P T+    S TA     P G     +S+ V     SA + +A+ Y   EP + +V P +GSP GGT+VT+ G G
Sbjct: 1383 VNDSTITATIPPHTAGTSVDVTLRNGNGERSLVAGFFYYPTPTLSAITPTSGSALGGTGVLVFGTGFLNNNAGTLSVTFDGVPATSINIFSDTAFLSEAPPGQPDSPVSIQVANGNGSATLIDAYQYTAPEPTLFAVTPPTGSPLGGTLVTIEGTG 1538          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115646.3241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S0W7H3_9CRYP1.210e-1733.71Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0TYU6_HEMAN1.120e-1433.15Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
F4PJ07_CAVFA5.250e-928.93Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
L1K274_GUITC1.960e-736.84PDZ domain-containing protein n=1 Tax=Guillardia t... [more]
A0A6T7TMM8_9CRYP3.600e-735.96Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0W3B7_9CRYP2.150e-629.94Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A521KEL4_9CHLR3.660e-627.27Cell shape-determining protein n=1 Tax=Dehalococco... [more]
A0A7S0MZH9_9CHLO8.860e-646.88Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
UPI000644D3C92.700e-529.12hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2D5AZZ2_9BACT4.860e-528.21Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115646contigM-pyrifera_M_contig115646:20..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog44689.DDB0201689
KEGG koko:K22128
KEGG TC1.A.75.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.IPT/TIG domain
EggNOG OGs3XG8D@554915,KOG4297@1,KOG4297@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04131
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.3601274-CDS-M-pyrifera_M_contig115646:19..5591622815672.3601274-CDS-M-pyrifera_M_contig115646:19..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115646 20..559 +
1692277514.9422793-CDS-M-pyrifera_M_contig115646:19..5591692277514.9422793-CDS-M-pyrifera_M_contig115646:19..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115646 20..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115646.3241.1prot_M-pyrifera_M_contig115646.3241.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115646 20..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115646.3241.1

>prot_M-pyrifera_M_contig115646.3241.1 ID=prot_M-pyrifera_M_contig115646.3241.1|Name=mRNA_M-pyrifera_M_contig115646.3241.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
FVGDRKCLATKLISPSVVACVVPPNAGGPHRVAVATAGKVSPASPAASFT
YDAAVAQTVTPSRGNAGSVVRIDVQSLGLLDFQPTAYIDGRPCTATKWLS
PTAVSCMVPEGTGMDLSVAVVVDGQSAVMHNAFSYVEPVVESVHPRSGSP
NGGTVVTVRGHGICSSVLLPPAIFLGNATC
back to top

mRNA from alignment at M-pyrifera_M_contig115646:20..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115646.3241.1 ID=mRNA_M-pyrifera_M_contig115646.3241.1|Name=mRNA_M-pyrifera_M_contig115646.3241.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig115646:20..559+ (Macrocystis pyrifera P11B4 male)
TTTGTTGGGGATCGCAAGTGCTTGGCAACCAAACTCATCTCTCCGAGTGT GGTGGCCTGCGTGGTGCCACCGAACGCAGGCGGCCCCCACCGCGTTGCCG TTGCAACTGCTGGTAAGGTGTCTCCCGCGTCTCCGGCAGCGTCCTTCACC TACGATGCGGCTGTTGCGCAGACTGTCACCCCGTCACGTGGCAACGCCGG CAGTGTCGTCCGCATTGACGTGCAGTCTCTGGGGTTGTTGGACTTCCAGC CTACCGCGTACATCGACGGGCGGCCGTGCACTGCCACCAAGTGGCTGTCC CCTACTGCAGTGTCTTGCATGGTACCCGAAGGGACCGGGATGGACCTTTC CGTCGCTGTTGTAGTCGACGGCCAGTCCGCGGTGATGCACAACGCGTTCA GCTACGTCGAGCCCGTGGTTGAGTCTGTACACCCTCGCAGCGGATCTCCC AACGGGGGCACTGTGGTGACTGTGCGTGGACATGGAATCTGCTCGTCGGT ACTCCTGCCTCCGGCAATCTTCCTCGGCAACGCGACGTGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115646:20..559+

>mRNA_M-pyrifera_M_contig115646.3241.1 ID=mRNA_M-pyrifera_M_contig115646.3241.1|Name=mRNA_M-pyrifera_M_contig115646.3241.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig115646:20..559+ (Macrocystis pyrifera P11B4 male)
TTTGTTGGGGATCGCAAGTGCTTGGCAACCAAACTCATCTCTCCGAGTGT
GGTGGCCTGCGTGGTGCCACCGAACGCAGGCGGCCCCCACCGCGTTGCCG
TTGCAACTGCTGGTAAGGTGTCTCCCGCGTCTCCGGCAGCGTCCTTCACC
TACGATGCGGCTGTTGCGCAGACTGTCACCCCGTCACGTGGCAACGCCGG
CAGTGTCGTCCGCATTGACGTGCAGTCTCTGGGGTTGTTGGACTTCCAGC
CTACCGCGTACATCGACGGGCGGCCGTGCACTGCCACCAAGTGGCTGTCC
CCTACTGCAGTGTCTTGCATGGTACCCGAAGGGACCGGGATGGACCTTTC
CGTCGCTGTTGTAGTCGACGGCCAGTCCGCGGTGATGCACAACGCGTTCA
GCTACGTCGAGCCCGTGGTTGAGTCTGTACACCCTCGCAGCGGATCTCCC
AACGGGGGCACTGTGGTGACTGTGCGTGGACATGGAATCTGCTCGTCGGT
ACTCCTGCCTCCGGCAATCTTCCTCGGCAACGCGACGTGCTTTGTTGGGG
ATCGCAAGTGCTTGGCAACCAAACTCATCTCTCCGAGTGTGGTGGCCTGC
GTGGTGCCACCGAACGCAGGCGGCCCCCACCGCGTTGCCGTTGCAACTGC
TGGTAAGGTGTCTCCCGCGTCTCCGGCAGCGTCCTTCACCTACGATGCGG
CTGTTGCGCAGACTGTCACCCCGTCACGTGGCAACGCCGGCAGTGTCGTC
CGCATTGACGTGCAGTCTCTGGGGTTGTTGGACTTCCAGCCTACCGCGTA
CATCGACGGGCGGCCGTGCACTGCCACCAAGTGGCTGTCCCCTACTGCAG
TGTCTTGCATGGTACCCGAAGGGACCGGGATGGACCTTTCCGTCGCTGTT
GTAGTCGACGGCCAGTCCGCGGTGATGCACAACGCGTTCAGCTACGTCGA
GCCCGTGGTTGAGTCTGTACACCCTCGCAGCGGATCTCCCAACGGGGGCA
CTGTGGTGACTGTGCGTGGACATGGAATCTGCTCGTCGGTACTCCTGCCT
CCGGCAATCTTCCTCGGCAACGCGACGTGC
back to top