mRNA_M-pyrifera_M_contig115634.3240.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115634.3240.1
Unique NamemRNA_M-pyrifera_M_contig115634.3240.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A6A0H9G5_HYAAZ (HELICc2 domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H9G5_HYAAZ)

HSP 1 Score: 147 bits (372), Expect = 1.110e-42
Identity = 69/122 (56.56%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:    7 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLA 372
            P +Y+       RL+YLRDQ +IR++DFL FDAMR  AQCVGR +RGK+DYG+++FAD+R+ RADKR+KLP+WI ++L  +  NLST+ AV L R +LR+MAQP ++ED++G+SLLTKE ++
Sbjct:   52 PFMYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHAAQCVGRAMRGKTDYGILLFADKRFARADKRSKLPKWIQEHLADNKCNLSTEEAVQLCRPWLRQMAQPFTREDQLGISLLTKEQIS 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A8D8YRE5_9HEMI (TFIIH basal transcription factor complex helicase XPD subunit n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8YRE5_9HEMI)

HSP 1 Score: 143 bits (360), Expect = 1.240e-41
Identity = 69/112 (61.61%), Postives = 92/112 (82.14%), Query Frame = 1 
Query:   43 RLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLAKR 378
            RL+YLRDQ  IR++DFL FDAMR  AQCVGRVIRGK+DYG+MIFAD+R+ R+DKR+KLP+WI +YL  +  NLST+ AV L + FLR+MAQP ++ED +GV+LL+ + L ++
Sbjct:    4 RLEYLRDQYQIRENDFLTFDAMRHAAQCVGRVIRGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRFLRQMAQPFTREDMLGVALLSLDQLLEK 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A6B2LA38_9EUKA (HELICc2 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LA38_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 1.660e-41
Identity = 72/124 (58.06%), Postives = 92/124 (74.19%), Query Frame = 1 
Query:    7 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLAKR 378
            P +Y+       RL++L+ +  I + +FL FDAMRT AQCVGRVIRGK+DYG+M+FAD R+NR DKR+KLPQWI QYL  +HLNLSTDVAV +   FLREM Q   KED++GVSL T + + K+
Sbjct:  181 PYVYTESRVLKARLEFLKKKYRIEEGEFLTFDAMRTAAQCVGRVIRGKTDYGIMVFADNRFNRIDKRSKLPQWILQYLSPAHLNLSTDVAVSMASDFLREMGQAVDKEDQMGVSLWTLKDVEKQ 304
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A0P4W6G4_SCYOL (General transcription and DNA repair factor IIH helicase subunit XPD n=3 Tax=Heterotremata TaxID=116706 RepID=A0A0P4W6G4_SCYOL)

HSP 1 Score: 154 bits (388), Expect = 5.070e-41
Identity = 74/121 (61.16%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:    7 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 369
            P +Y+       RL+YLRDQ +IR++DFL FDAMR  AQCVGRV+RGK+DYG+M+FAD+R++RADKRNKLP+WI +YL+ S  NLST+ AV L R +LR+MAQP +++D++GVSLLT E L
Sbjct:  621 PFMYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHAAQCVGRVMRGKTDYGIMLFADQRFSRADKRNKLPRWIQEYLMDSKCNLSTEEAVQLTRPWLRQMAQPFTRDDQLGVSLLTLEQL 741
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: UPI001B7D9FC6 (general transcription and DNA repair factor IIH helicase subunit XPD-like n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7D9FC6)

HSP 1 Score: 147 bits (371), Expect = 5.120e-41
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1 
Query:    7 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 369
            P +Y+       RL+YLRDQ  IR++DFL FDAMR  AQCVGRVIRGK+DYG+MIFAD+RY RADKR KLP+WI +++  S LNL+ D  V L + FLR+MAQP  KED++G+SLLT + L
Sbjct:  184 PYVYTQSRLLKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRVIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHITDSSLNLTIDETVQLSKHFLRDMAQPFRKEDQLGLSLLTLDQL 304
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A0S7KD64_9TELE (ERCC2 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KD64_9TELE)

HSP 1 Score: 143 bits (360), Expect = 9.200e-41
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 1 
Query:    7 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 369
            P +Y+       RL+YLRDQ  IR++DFL FDAMR  AQCVGR IRGK+DYG+M+FAD+RY R+DKR KLP+WI +++    LNL+ D AV L + FLR+MAQP  +ED++G+SLLT E L
Sbjct:   61 PYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRYARSDKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQL 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: ERCC2_DICDI (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=ERCC2_DICDI)

HSP 1 Score: 152 bits (385), Expect = 1.400e-40
Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = 1 
Query:   43 RLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLAKR 378
            RL++LRD+  IR+++FL FDAMRT +QCVGRVIRGKSDYG+MIFAD+RYNR DKRNKLPQWI Q+    HLNLSTD+A+ L ++FLREM QP S+E+++G SL + E + K+
Sbjct:  629 RLEFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLSTDMAISLSKTFLREMGQPFSREEQLGKSLWSLEHVEKQ 740
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A151ZH66_9MYCE (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZH66_9MYCE)

HSP 1 Score: 152 bits (385), Expect = 1.410e-40
Identity = 72/112 (64.29%), Postives = 92/112 (82.14%), Query Frame = 1 
Query:   43 RLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESLAKR 378
            RL+YLRD   IR+++FL FDAMRT +QCVGRVIRGK+DYG+MIFAD+RYNR DKRNKLPQWI Q++   HLNLSTD+A+ L R+FLREM QP ++E ++G SL + E + K+
Sbjct:  630 RLEYLRDNMQIRENEFLTFDAMRTASQCVGRVIRGKTDYGIMIFADKRYNRLDKRNKLPQWILQFVQPQHLNLSTDMAINLSRNFLREMGQPYTRESQLGKSLWSIEHIEKQ 741
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: UPI0015A87E49 (general transcription and DNA repair factor IIH helicase subunit XPD-like isoform X1 n=2 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A87E49)

HSP 1 Score: 140 bits (354), Expect = 1.650e-40
Identity = 66/109 (60.55%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:   43 RLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 369
            RL+YLRDQ  IR+SDFL FDA+R  +QCVGR IRGK+DYG+MIFAD+R++R DK  KLP+WI +YL +S  NLS + AV + + FL++MAQP ++ED++G+SLLT E L
Sbjct:    8 RLEYLRDQFQIRESDFLTFDALRHASQCVGRAIRGKTDYGIMIFADKRFSRVDKYGKLPKWIQEYLTESFHNLSIEEAVQIAKRFLKQMAQPFTREDQLGISLLTLEQL 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Match: A0A8J5K1R1_HOMAM (General transcription and DNA repair factor IIH helicase subunit XPD n=3 Tax=Astacidea TaxID=6712 RepID=A0A8J5K1R1_HOMAM)

HSP 1 Score: 152 bits (384), Expect = 1.770e-40
Identity = 74/121 (61.16%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:    7 PSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGKSDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFLREMAQPTSKEDEIGVSLLTKESL 369
            P +Y+       RL+YLRDQ +IR+SDFL FDAMR  AQCVGRV+RGK+DYG+M+FAD+R+ RADKRNKLP+WI ++LV S  NLST+ AV + R +LR+MAQP +++D++GVSLLT E L
Sbjct:  616 PFMYTQSRILKARLEYLRDQFNIRESDFLTFDAMRHAAQCVGRVMRGKTDYGIMLFADKRFARADKRNKLPRWIQEHLVDSKCNLSTEEAVQVTRPWLRQMAQPFTRDDQLGVSLLTLEQL 736
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115634.3240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A0H9G5_HYAAZ1.110e-4256.56HELICc2 domain-containing protein n=1 Tax=Hyalella... [more]
A0A8D8YRE5_9HEMI1.240e-4161.61TFIIH basal transcription factor complex helicase ... [more]
A0A6B2LA38_9EUKA1.660e-4158.06HELICc2 domain-containing protein n=1 Tax=Arcella ... [more]
A0A0P4W6G4_SCYOL5.070e-4161.16General transcription and DNA repair factor IIH he... [more]
UPI001B7D9FC65.120e-4160.33general transcription and DNA repair factor IIH he... [more]
A0A0S7KD64_9TELE9.200e-4157.85ERCC2 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
ERCC2_DICDI1.400e-4064.29General transcription and DNA repair factor IIH he... [more]
A0A151ZH66_9MYCE1.410e-4064.29General transcription and DNA repair factor IIH he... [more]
UPI0015A87E491.650e-4060.55general transcription and DNA repair factor IIH he... [more]
A0A8J5K1R1_HOMAM1.770e-4061.16General transcription and DNA repair factor IIH he... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115634contigM-pyrifera_M_contig115634:186..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog44689.DDB0191272
Preferred nameERCC2
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042623,GO:0043139,GO:0043141,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1990234
EggNOG free text desc.HELICc2
EggNOG OGs3X87P@554915,COG1199@1,KOG1131@2759
Ec32 ortholog descriptionATP-dependent helicase, C-terminal
Ec32 orthologEc-19_001310.1
EC3.6.4.12
COG Functional cat.L
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.324402-CDS-M-pyrifera_M_contig115634:185..5631622815672.324402-CDS-M-pyrifera_M_contig115634:185..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115634 186..563 +
1692277514.9293165-CDS-M-pyrifera_M_contig115634:185..5631692277514.9293165-CDS-M-pyrifera_M_contig115634:185..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115634 186..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115634.3240.1prot_M-pyrifera_M_contig115634.3240.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115634 186..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115634.3240.1

>prot_M-pyrifera_M_contig115634.3240.1 ID=prot_M-pyrifera_M_contig115634.3240.1|Name=mRNA_M-pyrifera_M_contig115634.3240.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MCPSLYSLGEADMTRLDYLRDQNDIRDSDFLNFDAMRTTAQCVGRVIRGK
SDYGVMIFADRRYNRADKRNKLPQWITQYLVQSHLNLSTDVAVGLVRSFL
REMAQPTSKEDEIGVSLLTKESLAKR
back to top

mRNA from alignment at M-pyrifera_M_contig115634:186..563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115634.3240.1 ID=mRNA_M-pyrifera_M_contig115634.3240.1|Name=mRNA_M-pyrifera_M_contig115634.3240.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig115634:186..563+ (Macrocystis pyrifera P11B4 male)
ATGTGTCCCTCTCTCTATAGCCTGGGCGAGGCTGACATGACCAGGTTGGA
TTACTTGCGAGATCAGAACGACATCAGGGATAGCGATTTCCTCAACTTCG
ACGCAATGCGCACCACCGCCCAATGCGTGGGGCGAGTGATCAGAGGAAAG
TCTGACTATGGAGTGATGATCTTCGCCGACAGGCGATACAACAGAGCAGA
CAAGAGGAACAAGCTGCCCCAGTGGATCACGCAGTACCTCGTGCAGTCGC
ACCTCAACCTCAGCACCGACGTCGCCGTGGGCCTCGTGAGGAGCTTTTTG
CGCGAGATGGCCCAGCCCACCTCCAAGGAGGACGAGATCGGCGTTTCTCT
CCTCACAAAGGAGTCGCTCGCAAAGAGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115634:186..563+

>mRNA_M-pyrifera_M_contig115634.3240.1 ID=mRNA_M-pyrifera_M_contig115634.3240.1|Name=mRNA_M-pyrifera_M_contig115634.3240.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig115634:186..563+ (Macrocystis pyrifera P11B4 male)
ATGTGTCCCTCTCTCTATAGCCTGGGCGAGGCTGACATGACCAGGTTGGA
TTACTTGCGAGATCAGAACGACATCAGGGATAGCGATTTCCTCAACTTCG
ACGCAATGCGCACCACCGCCCAATGCGTGGGGCGAGTGATCAGAGGAAAG
TCTGACTATGGAGTGATGATCTTCGCCGACAGGCGATACAACAGAGCAGA
CAAGAGGAACAAGCTGCCCCAGTGGATCACGCAGTACCTCGTGCAGTCGC
ACCTCAACCTCAGCACCGACGTCGCCGTGGGCCTCGTGAGGAGCTTTTTG
CGCGAGATGGCCCAGCCCACCTCCAAGGAGGACGAGATCGGCGTTTCTCT
CCTCACAAAGGAGTCGCTCGCAAAGAGAATGTGTCCCTCTCTCTATAGCC
TGGGCGAGGCTGACATGACCAGGTTGGATTACTTGCGAGATCAGAACGAC
ATCAGGGATAGCGATTTCCTCAACTTCGACGCAATGCGCACCACCGCCCA
ATGCGTGGGGCGAGTGATCAGAGGAAAGTCTGACTATGGAGTGATGATCT
TCGCCGACAGGCGATACAACAGAGCAGACAAGAGGAACAAGCTGCCCCAG
TGGATCACGCAGTACCTCGTGCAGTCGCACCTCAACCTCAGCACCGACGT
CGCCGTGGGCCTCGTGAGGAGCTTTTTGCGCGAGATGGCCCAGCCCACCT
CCAAGGAGGACGAGATCGGCGTTTCTCTCCTCACAAAGGAGTCGCTCGCA
AAGAGA
back to top