mRNA_M-pyrifera_M_contig115600.3230.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115600.3230.1
Unique NamemRNA_M-pyrifera_M_contig115600.3230.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115600.3230.1 vs. uniprot
Match: A0A6H5KBR7_9PHAE (GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.510e-31
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    4 LGEIHRPHPQRFRLYKGEFWHVLHRSFCEYATHSPDNVARSLSAYFTGYRISDESYFQTLACHPE 198
            LG I R +PQRFRLYKGEFW   HRSFCEYA+ SPDNVAR+LSAYFTGYRISDESYFQTLACHPE
Sbjct:  257 LGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTLACHPE 321
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BLAST of mRNA_M-pyrifera_M_contig115600.3230.1 vs. uniprot
Match: D8LDZ1_ECTSI (Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 4.330e-31
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    4 LGEIHRPHPQRFRLYKGEFWHVLHRSFCEYATHSPDNVARSLSAYFTGYRISDESYFQTLACHPE 198
            LG I R +PQRFRLYKGEFW   HRSFCEYA+ SPDNVAR+LSAYFTGYRISDESYFQTLACHPE
Sbjct:  317 LGRIQRAYPQRFRLYKGEFWGAFHRSFCEYASWSPDNVARTLSAYFTGYRISDESYFQTLACHPE 381
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BLAST of mRNA_M-pyrifera_M_contig115600.3230.1 vs. uniprot
Match: A0A6H5L1U8_9PHAE (GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1U8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-20
Identity = 41/61 (67.21%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   13 IHRPHPQRFRLYKGEFWHVLHRSFCEYATHSPDNVARSLSAYFTGYRISDESYFQTLACHP 195
            + RP P  F L+KGEFW  LHR FCEY   SPDNVARSL AYF  +RISDES+FQT  CHP
Sbjct:  298 VERPLPNLFTLFKGEFWVALHRDFCEYVHESPDNVARSLQAYFAKFRISDESFFQTTLCHP 358
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BLAST of mRNA_M-pyrifera_M_contig115600.3230.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.490e-20
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   22 PHPQRFRLYKGEFWHVLHRSFCEYATHSPDNVARSLSAYFTGYRISDESYFQTLACHP 195
            P    F +YKGEFW +LHRSFC+Y   SPDNVARSL AYF+ +RISDESYFQT+ CHP
Sbjct:  341 PSKSMFTVYKGEFWVILHRSFCKYLEASPDNVARSLQAYFSKFRISDESYFQTVLCHP 398
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BLAST of mRNA_M-pyrifera_M_contig115600.3230.1 vs. uniprot
Match: A0A835YZY2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.980e-17
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   13 IHRPHPQRFRLYKGEFWHVLHRSFCEYATHSPDNVARSLSAYFTGYRISDESYFQTLACHPE 198
            + RP P  F +YKGEFW VLHRS  EY  HSPDNVARS+  Y     ISDE +FQT+ACHP+
Sbjct:  221 VARPPPDLFDVYKGEFWVVLHRSLAEYIHHSPDNVARSVYLYLAATYISDELFFQTVACHPK 282
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BLAST of mRNA_M-pyrifera_M_contig115600.3230.1 vs. uniprot
Match: D8LCA7_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.670e-14
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   13 IHRPHPQRFRLYKGEFWHVLHRSFCEYATHSPDNVARSLSAYFTGYRISDESYFQTLACHP 195
            + RP P  F ++KGEFW +LHRS  EY   SPDN AR L  Y +G  +SDE +FQT+AC+P
Sbjct:  175 LRRPMPNIFTVHKGEFWVMLHRSMAEYVHKSPDNQARMLLTYSSGMMVSDEEFFQTVACNP 235
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BLAST of mRNA_M-pyrifera_M_contig115600.3230.1 vs. uniprot
Match: A0A6H5KJT8_9PHAE (Protein xylosyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.490e-14
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   13 IHRPHPQRFRLYKGEFWHVLHRSFCEYATHSPDNVARSLSAYFTGYRISDESYFQTLACHP 195
            + RP P  F ++KGEFW +LHRS  EY   S DN AR L  YF+G  +SDE +FQT+AC+P
Sbjct:  269 LRRPMPNVFTVHKGEFWVMLHRSMAEYVHKSRDNQARMLLTYFSGMIVSDEEFFQTVACNP 329
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115600.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KBR7_9PHAE2.510e-3184.62GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LDZ1_ECTSI4.330e-3184.62Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus... [more]
A0A6H5L1U8_9PHAE1.100e-2067.21GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5L6Q9_9PHAE4.490e-2068.97Protein xylosyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A835YZY2_9STRA1.980e-1761.29Core-2/I-branching enzyme-domain-containing protei... [more]
D8LCA7_ECTSI1.670e-1454.10Protein xylosyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KJT8_9PHAE7.490e-1454.10Protein xylosyltransferase (Fragment) n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115600contigM-pyrifera_M_contig115600:203..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D8LDZ1
Preferred nameXYLT2
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
EC2.4.2.26
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.729791-CDS-M-pyrifera_M_contig115600:202..4001622815671.729791-CDS-M-pyrifera_M_contig115600:202..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115600 203..400 +
1692277514.6456337-CDS-M-pyrifera_M_contig115600:202..4001692277514.6456337-CDS-M-pyrifera_M_contig115600:202..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115600 203..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115600.3230.1prot_M-pyrifera_M_contig115600.3230.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115600 203..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115600.3230.1

>prot_M-pyrifera_M_contig115600.3230.1 ID=prot_M-pyrifera_M_contig115600.3230.1|Name=mRNA_M-pyrifera_M_contig115600.3230.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MLGEIHRPHPQRFRLYKGEFWHVLHRSFCEYATHSPDNVARSLSAYFTGY
RISDESYFQTLACHPE
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mRNA from alignment at M-pyrifera_M_contig115600:203..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115600.3230.1 ID=mRNA_M-pyrifera_M_contig115600.3230.1|Name=mRNA_M-pyrifera_M_contig115600.3230.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig115600:203..400+ (Macrocystis pyrifera P11B4 male)
ATGCTGGGGGAGATACACCGGCCTCATCCGCAAAGATTCCGTCTTTACAA
GGGGGAGTTCTGGCATGTTCTGCACCGGTCGTTCTGCGAGTACGCGACTC
ACTCTCCGGATAACGTGGCGCGGTCCCTGTCGGCTTATTTTACGGGCTAC
CGGATCTCGGACGAGAGTTATTTTCAGACCCTCGCCTGCCACCCGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115600:203..400+

>mRNA_M-pyrifera_M_contig115600.3230.1 ID=mRNA_M-pyrifera_M_contig115600.3230.1|Name=mRNA_M-pyrifera_M_contig115600.3230.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig115600:203..400+ (Macrocystis pyrifera P11B4 male)
ATGCTGGGGGAGATACACCGGCCTCATCCGCAAAGATTCCGTCTTTACAA
GGGGGAGTTCTGGCATGTTCTGCACCGGTCGTTCTGCGAGTACGCGACTC
ACTCTCCGGATAACGTGGCGCGGTCCCTGTCGGCTTATTTTACGGGCTAC
CGGATCTCGGACGAGAGTTATTTTCAGACCCTCGCCTGCCACCCGGAGAT
GCTGGGGGAGATACACCGGCCTCATCCGCAAAGATTCCGTCTTTACAAGG
GGGAGTTCTGGCATGTTCTGCACCGGTCGTTCTGCGAGTACGCGACTCAC
TCTCCGGATAACGTGGCGCGGTCCCTGTCGGCTTATTTTACGGGCTACCG
GATCTCGGACGAGAGTTATTTTCAGACCCTCGCCTGCCACCCGGAG
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