mRNA_M-pyrifera_M_contig11558.3226.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11558.3226.1
Unique NamemRNA_M-pyrifera_M_contig11558.3226.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11558.3226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11558contigM-pyrifera_M_contig11558:6054..6515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.2794688-CDS-M-pyrifera_M_contig11558:6053..63801622815671.2794688-CDS-M-pyrifera_M_contig11558:6053..6380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 6054..6380 +
1692277514.3516514-CDS-M-pyrifera_M_contig11558:6053..63801692277514.3516514-CDS-M-pyrifera_M_contig11558:6053..6380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 6054..6380 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.2903523-UTR-M-pyrifera_M_contig11558:6380..65151622815671.2903523-UTR-M-pyrifera_M_contig11558:6380..6515Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11558 6381..6515 +
1692277514.3602166-UTR-M-pyrifera_M_contig11558:6380..65151692277514.3602166-UTR-M-pyrifera_M_contig11558:6380..6515Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11558 6381..6515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11558.3226.1prot_M-pyrifera_M_contig11558.3226.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11558 6054..6380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11558.3226.1

>prot_M-pyrifera_M_contig11558.3226.1 ID=prot_M-pyrifera_M_contig11558.3226.1|Name=mRNA_M-pyrifera_M_contig11558.3226.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
VKPRSEEDESCSVLICFVQFCFLLFRVDSRFSQQAAKLHGTPPRAEREDE
GHRVSDPPLSNNIRPLLKEARKKERGPSKRRVFQTNWRCCHTSRAGQALP
CRSLGVTV*
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mRNA from alignment at M-pyrifera_M_contig11558:6054..6515+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11558.3226.1 ID=mRNA_M-pyrifera_M_contig11558.3226.1|Name=mRNA_M-pyrifera_M_contig11558.3226.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig11558:6054..6515+ (Macrocystis pyrifera P11B4 male)
GTAAAACCCCGTTCGGAGGAGGACGAGTCCTGCTCTGTTCTAATCTGTTT
TGTTCAGTTTTGCTTCCTTCTGTTTCGTGTCGACAGCCGTTTCTCACAAC
AAGCGGCAAAACTACACGGAACGCCACCGCGAGCGGAGCGTGAGGACGAG
GGACATAGAGTCAGCGATCCCCCACTATCCAACAACATCCGTCCGTTGCT
AAAAGAAGCCCGTAAAAAAGAGAGGGGCCCGTCAAAGCGACGGGTTTTCC
AAACCAATTGGCGTTGTTGTCATACTAGTAGAGCAGGGCAAGCGTTGCCC
TGCCGTTCCCTAGGTGTTACCGTTTAATACAAAGTTGGACGGAGGTATGG
AAATTTCAGGGATGGTTCTGGCTTAGAAAAGCCGCAAAAAAACAGGAACG
ATACGTTCGCGAAGACGTCGGCCAGAAACAATAACAAGATGCTTGTGCAT
TTGGGGTAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11558:6054..6515+

>mRNA_M-pyrifera_M_contig11558.3226.1 ID=mRNA_M-pyrifera_M_contig11558.3226.1|Name=mRNA_M-pyrifera_M_contig11558.3226.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig11558:6054..6515+ (Macrocystis pyrifera P11B4 male)
GTAAAACCCCGTTCGGAGGAGGACGAGTCCTGCTCTGTTCTAATCTGTTT
TGTTCAGTTTTGCTTCCTTCTGTTTCGTGTCGACAGCCGTTTCTCACAAC
AAGCGGCAAAACTACACGGAACGCCACCGCGAGCGGAGCGTGAGGACGAG
GGACATAGAGTCAGCGATCCCCCACTATCCAACAACATCCGTCCGTTGCT
AAAAGAAGCCCGTAAAAAAGAGAGGGGCCCGTCAAAGCGACGGGTTTTCC
AAACCAATTGGCGTTGTTGTCATACTAGTAGAGCAGGGCAAGCGTTGCCC
TGCCGTTCCCTAGGTGTTACCGTTTAAGTAAAACCCCGTTCGGAGGAGGA
CGAGTCCTGCTCTGTTCTAATCTGTTTTGTTCAGTTTTGCTTCCTTCTGT
TTCGTGTCGACAGCCGTTTCTCACAACAAGCGGCAAAACTACACGGAACG
CCACCGCGAGCGGAGCGTGAGGACGAGGGACATAGAGTCAGCGATCCCCC
ACTATCCAACAACATCCGTCCGTTGCTAAAAGAAGCCCGTAAAAAAGAGA
GGGGCCCGTCAAAGCGACGGGTTTTCCAAACCAATTGGCGTTGTTGTCAT
ACTAGTAGAGCAGGGCAAGCGTTGCCCTGCCGTTCCCTAGGTGTTACCGT
TTAA
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