mRNA_M-pyrifera_M_contig115539.3222.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115539.3222.1
Unique NamemRNA_M-pyrifera_M_contig115539.3222.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A2D5WBT1_9BACT (dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5WBT1_9BACT)

HSP 1 Score: 161 bits (408), Expect = 6.600e-48
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 1 
Query:    1 ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARL 369
            AL G PGVHSAR+AG HGDDAANNA LL +L+++P+A RGARFVCAL L  PDG++A   EG A G I HA RG  DFGYDPLF+FTE GF  +G+ FAEL  DEK+ VSHRGRAL    A L
Sbjct:   76 ALGGTPGVHSARFAGEHGDDAANNALLLEKLSNLPEAERGARFVCALALAAPDGSLAATFEGSARGRILHAPRGSGDFGYDPLFLFTEEGFAASGRGFAELSADEKSTVSHRGRALRQFVAAL 198
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BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A518EN25_9BACT (dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EN25_9BACT)

HSP 1 Score: 159 bits (403), Expect = 6.060e-47
Identity = 85/127 (66.93%), Postives = 93/127 (73.23%), Query Frame = 1 
Query:    1 ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPD-GTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARLDEV 378
            ALDGAPGV+SARYAG HGDD ANNA+LL EL+ VPD  RGA FVCAL L RPD G IA E EG   G I    +GE  FGYDPLF FTEPGF VTG  FA LR +EKA+VSHRGRAL AL   L ++
Sbjct:   84 ALDGAPGVYSARYAGVHGDDEANNARLLKELSAVPDEDRGASFVCALALARPDSGEIAYETEGRTFGEILREAQGEGGFGYDPLFRFTEPGFPVTGMVFARLRAEEKASVSHRGRALRALEPALADL 210
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BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A7C7YUS7_9BACT (dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7YUS7_9BACT)

HSP 1 Score: 159 bits (402), Expect = 9.930e-47
Identity = 81/123 (65.85%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:    1 ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARL 369
            ALDGAPGV SAR+AG HGDDAANN  LL +L  +P  +RGARF+CAL L RPDGT+A E+EG A G I    RG  DFGYDPLF+FTEPG   +GK FA L P EK AVSHRGRAL  LA+ L
Sbjct:   94 ALDGAPGVLSARFAGQHGDDAANNRLLLEKLHGLPTEQRGARFICALALARPDGTLAAEIEGSARGLILEEPRGSGDFGYDPLFLFTEPGHAASGKSFASLTPLEKTAVSHRGRALRKLASLL 216
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BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A2D6HJQ8_9BACT (dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HJQ8_9BACT)

HSP 1 Score: 158 bits (399), Expect = 1.670e-46
Identity = 81/124 (65.32%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:    4 LDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARLDE 375
            LDGAPGVHSAR+AG HG+DAANN  LL EL  V +  R ARFVCAL L RPDG++A+E+ G A G I  A RG  DFGYDPLF+FTE GFD TG+ FAEL   +K+AVSHRGRAL  L +RL E
Sbjct:   77 LDGAPGVHSARFAGEHGNDAANNHHLLEELEGVAEENRKARFVCALVLARPDGSLAVELMGEARGRILTARRGGGDFGYDPLFLFTEEGFDQTGRSFAELSGPQKSAVSHRGRALRMLLSRLGE 200
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BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A523PUI8_9BACT (dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PUI8_9BACT)

HSP 1 Score: 155 bits (391), Expect = 3.530e-45
Identity = 80/125 (64.00%), Postives = 90/125 (72.00%), Query Frame = 1 
Query:    4 LDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARLDEV 378
            L GAPGV SAR+AG+HGDD ANN KLL+ LA +P  +RGARFVCAL L  PDG IA E EG A G I    RG+ DFGYDPLF+FTE G   TG+ FAEL  +EK AVSHRGRAL  LA  L E+
Sbjct:   88 LGGAPGVGSARFAGSHGDDDANNEKLLALLAGIPAEQRGARFVCALALAAPDGEIAFETEGTARGRILEGPRGDGDFGYDPLFLFTEAGHAATGRGFAELTAEEKRAVSHRGRALRELAGSLPEL 212
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BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A2E5X4Y2_9BACT (dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X4Y2_9BACT)

HSP 1 Score: 148 bits (374), Expect = 8.810e-43
Identity = 76/123 (61.79%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:    1 ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARL 369
            AL G PGVHSAR+AG HGDD+ANNA LL  LA +   +RGA FVCAL L  PDG++    EG A G I H  RG  DFGYDPLF+FTE GF  TG+ FAEL  DEK+ VSHRGRAL    A L
Sbjct:   74 ALGGDPGVHSARFAGQHGDDSANNALLLERLAGLSAEQRGACFVCALALAAPDGSLVATFEGRARGQILHTPRGSGDFGYDPLFLFTEEGFAATGRGFAELSADEKSTVSHRGRALRDFTAAL 196
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BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A2E6D556_9BACT (dITP/XTP pyrophosphatase n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2E6D556_9BACT)

HSP 1 Score: 147 bits (372), Expect = 2.100e-42
Identity = 74/116 (63.79%), Postives = 85/116 (73.28%), Query Frame = 1 
Query:    1 ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRAL 348
            ALDGAPGV SAR+AG HGDDAANN KLL+ L      +RGARFVCAL L  P+G +  + EG A G I  A RG  DFGYDPLF+FTE G D TG+ FAEL P+ K+A+SHRGRAL
Sbjct:   79 ALDGAPGVLSARFAGEHGDDAANNEKLLTLLEGKAPEQRGARFVCALALANPEGEVIAQFEGSAEGQILDAPRGSGDFGYDPLFLFTEEGHDQTGQGFAELAPEAKSAISHRGRAL 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A2D5XQD2_9BACT (dITP/XTP pyrophosphatase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XQD2_9BACT)

HSP 1 Score: 139 bits (350), Expect = 4.340e-39
Identity = 72/123 (58.54%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    1 ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARL 369
            AL GAPG+HSARY GTHGDD  NN KLL ELA VP+  R A FVCAL L RP+G I   +EG   G I +   G+  FGYDPLF F EP    T + FA L   EK+AVSHRGRAL AL   L
Sbjct:   76 ALGGAPGIHSARYGGTHGDDQGNNHKLLKELAQVPERNRNAAFVCALALARPNGEIETVLEGRTEGRILNQAEGQGGFGYDPLFQFIEPNLMQTNRCFASLTSTEKSAVSHRGRALRALGHEL 198
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BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A521L1S2_9BACT (dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521L1S2_9BACT)

HSP 1 Score: 139 bits (349), Expect = 5.980e-39
Identity = 74/125 (59.20%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:    1 ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARLDE 375
            AL GAPGV SAR+AG    DAANN  LL  L  VP  RRGARFVCALCL RPDGTI  E +G A G I  A RG   FGYDPL +F EPG    G  +AEL  ++K  VSHRGRA+A L   L E
Sbjct:   76 ALGGAPGVRSARFAGPGATDAANNRLLLERLVGVPPQRRGARFVCALCLARPDGTIVAEAQGSARGRILEAPRGAAGFGYDPLLLFDEPGQPGCGSTYAELTQEQKNQVSHRGRAIARLVEALRE 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Match: A0A2D5B168_9BACT (dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5B168_9BACT)

HSP 1 Score: 137 bits (346), Expect = 1.650e-38
Identity = 76/123 (61.79%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:    1 ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLCRPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAELRPDEKAAVSHRGRALAALAARL 369
            AL GAPGV SAR++G    DA NN KLL+ELAD     R ARFVCALCL  P G +A E+ G A G I +  RG   FGYDPLF+FTEPG D TGK FAEL   EK+ VSHRGRAL ALA +L
Sbjct:   76 ALGGAPGVLSARFSGVDATDAQNNEKLLAELADG-SCDRSARFVCALCLAHP-GVVAAEIAGTARGEILNVSRGTGGFGYDPLFLFTEPGHDATGKTFAELTEAEKSEVSHRGRALRALAKKL 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115539.3222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5WBT1_9BACT6.600e-4865.04dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes ba... [more]
A0A518EN25_9BACT6.060e-4766.93dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes ba... [more]
A0A7C7YUS7_9BACT9.930e-4765.85dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes ba... [more]
A0A2D6HJQ8_9BACT1.670e-4665.32dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes ba... [more]
A0A523PUI8_9BACT3.530e-4564.00dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes ba... [more]
A0A2E5X4Y2_9BACT8.810e-4361.79dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes ba... [more]
A0A2E6D556_9BACT2.100e-4263.79dITP/XTP pyrophosphatase n=3 Tax=cellular organism... [more]
A0A2D5XQD2_9BACT4.340e-3958.54dITP/XTP pyrophosphatase n=2 Tax=Planctomycetes ba... [more]
A0A521L1S2_9BACT5.980e-3959.20dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes ba... [more]
A0A2D5B168_9BACT1.650e-3861.79dITP/XTP pyrophosphatase n=1 Tax=Planctomycetes ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115539contigM-pyrifera_M_contig115539:179..565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score129.4
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog1118060.CAGZ01000030_gene1227
Preferred namerdgB
KEGG rclassRC00002,RC00302
KEGG koko:K01776,ko:K02428
KEGG ReactionR00260,R00426,R00720,R01855,R02100,R02720,R03531
KEGG Pathwayko00230,ko00471,ko01100,map00230,map00471,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
EggNOG free text desc.Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
EggNOG OGs2GM2B@201174,4CUUU@84998,COG0127@1,COG0127@2
EC3.6.1.66,5.1.1.3
COG Functional cat.F
Best tax levelCoriobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01011
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.10035-CDS-M-pyrifera_M_contig115539:178..5651622815671.10035-CDS-M-pyrifera_M_contig115539:178..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115539 179..565 -
1692277514.2834587-CDS-M-pyrifera_M_contig115539:178..5651692277514.2834587-CDS-M-pyrifera_M_contig115539:178..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115539 179..565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115539.3222.1prot_M-pyrifera_M_contig115539.3222.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115539 179..565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115539.3222.1

>prot_M-pyrifera_M_contig115539.3222.1 ID=prot_M-pyrifera_M_contig115539.3222.1|Name=mRNA_M-pyrifera_M_contig115539.3222.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
ALDGAPGVHSARYAGTHGDDAANNAKLLSELADVPDARRGARFVCALCLC
RPDGTIALEVEGYASGAIAHAERGEHDFGYDPLFVFTEPGFDVTGKHFAE
LRPDEKAAVSHRGRALAALAARLDEVQG*
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mRNA from alignment at M-pyrifera_M_contig115539:179..565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115539.3222.1 ID=mRNA_M-pyrifera_M_contig115539.3222.1|Name=mRNA_M-pyrifera_M_contig115539.3222.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig115539:179..565- (Macrocystis pyrifera P11B4 male)
GCCTTGGACGGCGCACCGGGCGTGCACTCGGCGCGCTACGCGGGCACGCA
TGGCGACGACGCGGCGAACAACGCCAAGCTCTTGAGCGAGCTGGCGGACG
TGCCGGACGCCCGCCGCGGCGCGCGGTTCGTCTGCGCGCTGTGCCTGTGC
CGCCCGGACGGCACGATCGCCTTGGAGGTCGAAGGCTACGCGTCCGGCGC
AATCGCCCACGCGGAGCGCGGCGAACACGACTTCGGCTACGACCCCTTGT
TCGTGTTCACGGAGCCGGGCTTCGACGTGACGGGCAAGCACTTCGCGGAA
CTGCGCCCGGACGAGAAGGCCGCGGTCAGCCACCGCGGCCGCGCACTCGC
GGCGCTTGCGGCGCGCCTGGACGAAGTCCAAGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115539:179..565-

>mRNA_M-pyrifera_M_contig115539.3222.1 ID=mRNA_M-pyrifera_M_contig115539.3222.1|Name=mRNA_M-pyrifera_M_contig115539.3222.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig115539:179..565- (Macrocystis pyrifera P11B4 male)
GCCTTGGACGGCGCACCGGGCGTGCACTCGGCGCGCTACGCGGGCACGCA
TGGCGACGACGCGGCGAACAACGCCAAGCTCTTGAGCGAGCTGGCGGACG
TGCCGGACGCCCGCCGCGGCGCGCGGTTCGTCTGCGCGCTGTGCCTGTGC
CGCCCGGACGGCACGATCGCCTTGGAGGTCGAAGGCTACGCGTCCGGCGC
AATCGCCCACGCGGAGCGCGGCGAACACGACTTCGGCTACGACCCCTTGT
TCGTGTTCACGGAGCCGGGCTTCGACGTGACGGGCAAGCACTTCGCGGAA
CTGCGCCCGGACGAGAAGGCCGCGGTCAGCCACCGCGGCCGCGCACTCGC
GGCGCTTGCGGCGCGCCTGGACGAAGTCCAAGGCTGAGCCTTGGACGGCG
CACCGGGCGTGCACTCGGCGCGCTACGCGGGCACGCATGGCGACGACGCG
GCGAACAACGCCAAGCTCTTGAGCGAGCTGGCGGACGTGCCGGACGCCCG
CCGCGGCGCGCGGTTCGTCTGCGCGCTGTGCCTGTGCCGCCCGGACGGCA
CGATCGCCTTGGAGGTCGAAGGCTACGCGTCCGGCGCAATCGCCCACGCG
GAGCGCGGCGAACACGACTTCGGCTACGACCCCTTGTTCGTGTTCACGGA
GCCGGGCTTCGACGTGACGGGCAAGCACTTCGCGGAACTGCGCCCGGACG
AGAAGGCCGCGGTCAGCCACCGCGGCCGCGCACTCGCGGCGCTTGCGGCG
CGCCTGGACGAAGTCCAAGGCTGA
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