mRNA_M-pyrifera_M_contig115512.3217.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig115512.3217.1
Unique Name	mRNA_M-pyrifera_M_contig115512.3217.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: A0A5A8EGT0_CAFRO (L-ectoine synthase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGT0_CAFRO)

HSP 1 Score: 92.4 bits (228), Expect = 4.330e-22
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAVGDD 171
            G V KL  G  Y LDGHERHFLRATKGDL   C FNPP+AG+ED+N+DGVYPAV D+
Sbjct:  114 GTVYKLGPGDFYGLDGHERHFLRATKGDLHVACAFNPPIAGSEDHNEDGVYPAVDDE 170

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: A0A369TLD5_9PROT (L-ectoine synthase n=1 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369TLD5_9PROT)

HSP 1 Score: 78.2 bits (191), Expect = 4.520e-17
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAVGDD 171
            GK+ K+S GTMYAL+GHERH LR    D++ +CVFNPP+ G E ++++GVYP + DD
Sbjct:   76 GKIHKISDGTMYALNGHERHLLRGGSEDMRMICVFNPPLTGREVHDENGVYPLIEDD 132

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: A0A6N8B4R9_9FIRM (L-ectoine synthase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N8B4R9_9FIRM)

HSP 1 Score: 76.6 bits (187), Expect = 1.420e-16
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAVGD 168
            G V  +  GTMYALDGHE+H LRATK D++ +CVFNPP  G E ++++GVYP + D
Sbjct:   74 GTVYPIKAGTMYALDGHEKHHLRATKADMRMICVFNPPCTGKEVHDENGVYPLLED 129

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: UPI0004874460 (ectoine synthase n=2 Tax=Rhodovibrio TaxID=85274 RepID=UPI0004874460)

HSP 1 Score: 76.6 bits (187), Expect = 1.500e-16
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAVGD 168
            GKV K++ GTMYAL+GHERH+LR    D++ VCVFNPP+ G E ++++GVYP + D
Sbjct:   76 GKVHKITDGTMYALNGHERHYLRGGTEDMRMVCVFNPPLTGRETHDENGVYPLLED 131

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: A0A850KEQ1_9HYPH (L-ectoine synthase n=2 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A850KEQ1_9HYPH)

HSP 1 Score: 76.3 bits (186), Expect = 2.170e-16
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAVGDD 171
            G+  ++  GTMYAL+GHE+H LRAT  DL+ +CVF PP+ G ED++ DGVYP + D+
Sbjct:   76 GETHQIKDGTMYALNGHEKHHLRATTSDLRMICVFTPPLTGLEDHDADGVYPLIEDE 132

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: UPI00098454D6 (ectoine synthase n=1 Tax=Virgibacillus proomii TaxID=84407 RepID=UPI00098454D6)

HSP 1 Score: 75.1 bits (183), Expect = 6.640e-16
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAV 162
            G + K+S GTMYAL+ H+RH++RAT  DL  VCVFNPP+ GTE ++++G YP +
Sbjct:   79 GVIYKISPGTMYALNEHDRHYIRATTADLHLVCVFNPPLTGTEIHDEEGTYPVL 132

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: A0A1J4NMF7_9ACTN (L-ectoine synthase n=1 Tax=Streptomyces mangrovisoli TaxID=1428628 RepID=A0A1J4NMF7_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 7.300e-16
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAV 162
            GK   ++ GTMY LDGHERH LR  + D +CVCVFNPPV G ED++++GVYP +
Sbjct:   76 GKTHSITAGTMYLLDGHERHTLRVQE-DFRCVCVFNPPVTGREDHDENGVYPLL 128

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: A0A0S2NX57_STRHL (L-ectoine synthase n=20 Tax=Streptomyces TaxID=1883 RepID=A0A0S2NX57_STRHL)

HSP 1 Score: 74.7 bits (182), Expect = 9.170e-16
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAV 162
            GK   ++ GTMY LDGHERH LR  K D  C+CVFNPPV G ED++++GVYP +
Sbjct:   76 GKTYTITPGTMYLLDGHERHTLRV-KEDFHCICVFNPPVTGREDHDENGVYPLL 128

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: UPI000A27DF75 (ectoine synthase n=3 Tax=Paenibacillaceae TaxID=186822 RepID=UPI000A27DF75)

HSP 1 Score: 74.3 bits (181), Expect = 1.120e-15
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAVGD 168
            G+V  L  GT+YALDGHE+H+LRATK D++ VCVFNPP  G E ++++G YP + D
Sbjct:   74 GRVYPLKAGTVYALDGHEKHYLRATK-DMRMVCVFNPPCTGREVHDEEGTYPVLAD 128

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BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Match: A0A3G2JNT2_9ACTN (L-ectoine synthase n=2 Tax=Streptomyces TaxID=1883 RepID=A0A3G2JNT2_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 1.160e-15
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1

Query:    1 GKVTKLSTGTMYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYP 156
            GK   ++ GTMY LDGHERH LR  K D  C+CVFNPPV G ED++++GVYP
Sbjct:   76 GKTYTITPGTMYLLDGHERHTLRV-KDDFHCICVFNPPVTGREDHDENGVYP 126

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig115512.3217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A5A8EGT0_CAFRO	4.330e-22	70.18	L-ectoine synthase n=2 Tax=Cafeteria roenbergensis...	[more]
A0A369TLD5_9PROT	4.520e-17	56.14	L-ectoine synthase n=1 Tax=Ferruginivarius sedimin...	[more]
A0A6N8B4R9_9FIRM	1.420e-16	57.14	L-ectoine synthase n=1 Tax=Firmicutes bacterium Ta...	[more]
UPI0004874460	1.500e-16	57.14	ectoine synthase n=2 Tax=Rhodovibrio TaxID=85274 R...	[more]
A0A850KEQ1_9HYPH	2.170e-16	54.39	L-ectoine synthase n=2 Tax=Methylocystaceae bacter...	[more]
UPI00098454D6	6.640e-16	55.56	ectoine synthase n=1 Tax=Virgibacillus proomii Tax...	[more]
A0A1J4NMF7_9ACTN	7.300e-16	59.26	L-ectoine synthase n=1 Tax=Streptomyces mangroviso...	[more]
A0A0S2NX57_STRHL	9.170e-16	59.26	L-ectoine synthase n=20 Tax=Streptomyces TaxID=188...	[more]
UPI000A27DF75	1.120e-15	57.14	ectoine synthase n=3 Tax=Paenibacillaceae TaxID=18...	[more]
A0A3G2JNT2_9ACTN	1.160e-15	61.54	L-ectoine synthase n=2 Tax=Streptomyces TaxID=1883...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig115512	contig	M-pyrifera_M_contig115512:356..526 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	67.8
Seed ortholog evalue	1.6e-09
Seed eggNOG ortholog	889378.Spiaf_2838
Preferred name	ectC
KEGG rclass	RC01729
KEGG ko	ko:K06720
KEGG Reaction	R06979
KEGG Pathway	ko00260,ko01100,ko01120,map00260,map01100,map01120
KEGG Module	M00033
Hectar predicted targeting category	no signal peptide or anchor
EggNOG free text desc.	Cupin 2, conserved barrel domain protein
EggNOG OGs	COG1917@1,COG1917@2
EC	4.2.1.108
COG Functional cat.	L
Best tax level	Bacteria
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Exons	1
Model size	171
Cds size	141
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815670.8830538-CDS-M-pyrifera_M_contig115512:355..496	1622815670.8830538-CDS-M-pyrifera_M_contig115512:355..496	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig115512 356..496 -
1692277514.1874397-CDS-M-pyrifera_M_contig115512:355..496	1692277514.1874397-CDS-M-pyrifera_M_contig115512:355..496	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig115512 356..496 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815670.8950603-UTR-M-pyrifera_M_contig115512:496..526	1622815670.8950603-UTR-M-pyrifera_M_contig115512:496..526	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig115512 497..526 -
1692277514.2013857-UTR-M-pyrifera_M_contig115512:496..526	1692277514.2013857-UTR-M-pyrifera_M_contig115512:496..526	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig115512 497..526 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig115512.3217.1	prot_M-pyrifera_M_contig115512.3217.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig115512 356..496 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig115512:356..526-
coding sequence from alignment at M-pyrifera_M_contig115512:356..526-

protein sequence of mRNA_M-pyrifera_M_contig115512.3217.1

>prot_M-pyrifera_M_contig115512.3217.1 ID=prot_M-pyrifera_M_contig115512.3217.1|Name=mRNA_M-pyrifera_M_contig115512.3217.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MYALDGHERHFLRATKGDLQCVCVFNPPVAGTEDYNDDGVYPAVGDD

mRNA from alignment at M-pyrifera_M_contig115512:356..526-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig115512.3217.1 ID=mRNA_M-pyrifera_M_contig115512.3217.1|Name=mRNA_M-pyrifera_M_contig115512.3217.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig115512:356..526- (Macrocystis pyrifera P11B4 male)
GGCAAGGTGACCAAGCTGAGCACTGGGACGATGTATGCGCTGGATGGACA
TGAGCGTCATTTCTTGCGAGCCACCAAGGGGGACTTGCAGTGCGTGTGTG
TGTTCAACCCCCCAGTGGCAGGCACCGAAGACTACAATGACGATGGAGTT
TACCCGGCAGTGGGGGATGAC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115512:356..526-

>mRNA_M-pyrifera_M_contig115512.3217.1 ID=mRNA_M-pyrifera_M_contig115512.3217.1|Name=mRNA_M-pyrifera_M_contig115512.3217.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig115512:356..526- (Macrocystis pyrifera P11B4 male)
ATGTATGCGCTGGATGGACATGAGCGTCATTTCTTGCGAGCCACCAAGGG
GGACTTGCAGTGCGTGTGTGTGTTCAACCCCCCAGTGGCAGGCACCGAAG
ACTACAATGACGATGGAGTTTACCCGGCAGTGGGGGATGACATGTATGCG
CTGGATGGACATGAGCGTCATTTCTTGCGAGCCACCAAGGGGGACTTGCA
GTGCGTGTGTGTGTTCAACCCCCCAGTGGCAGGCACCGAAGACTACAATG
ACGATGGAGTTTACCCGGCAGTGGGGGATGAC