mRNA_M-pyrifera_M_contig115510.3216.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115510.3216.1
Unique NamemRNA_M-pyrifera_M_contig115510.3216.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: A0A0N7L6F7_PLAHL (Ribosomal protein l15 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L6F7_PLAHL)

HSP 1 Score: 86.7 bits (213), Expect = 2.490e-18
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 ELTMRDLRESGCAS-KHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKGQDGAVTVP---RPPPKEIEYYLRDETRGYLSQKVQ 315
            ++TM+ L +SG  +   V+ GI LLG GS+ F  K+ ++VS+AS+ AIEA+E NGGS+V+VY+  L LR  LK      T+P   RP PK++ YY   E RGYLS ++Q
Sbjct:  131 KITMKSLVDSGLVTCSRVKHGIKLLGNGSQYFTTKLDIEVSQASKSAIEAVEANGGSIVSVYYNRLALRALLKPHKFE-TLPQSARPNPKKLTYYTNYEKRGYLSPEIQ 238          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: A0A2A9NHI3_9AGAR (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NHI3_9AGAR)

HSP 1 Score: 85.5 bits (210), Expect = 6.530e-18
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    4 LTMRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKGQDGAVTVPRPPPKEIEYYLRDETRGYLSQKV 312
            +T R+L  SGC   +V DGI +LG G++ FD+K+++  SRAS+ AIEAIE+NGG VV +YH  L LR  + G+   ++       +I +Y +   RGYLS + 
Sbjct:  111 ITARELLLSGCVH-NVHDGIKVLGTGAKFFDQKIYITPSRASKGAIEAIEKNGGKVVCLYHNDLALRDSVNGRSDRISAAPTRRSDIMWYSKHRNRGYLSSET 212          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: A0A7M5V3H3_9CNID (39S ribosomal protein L15, mitochondrial n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V3H3_9CNID)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-17
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 ELTMRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKGQ--DGAVTVPRPPPKEIEYYLRDETRGYLSQKVQIDIAKQ 333
            ++T+  L  SG  S  ++DG+ +LG G+  F  K+ ++VSRA+Q AIEAIERNGG++ TVYH  + LR  LK +  D      RP  K I +Y   + RGYL+   +I   K+
Sbjct:  121 KITIETLWRSGAVSHKIKDGVRILGTGATWFQGKIDIEVSRATQSAIEAIERNGGNIKTVYHDKIALRALLKPEKYDIRPRAARPSHKHILFYADAKNRGYLAHPDEISKLKE 233          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: A0A8B6XPK3_HYDVU (39S ribosomal protein L15, mitochondrial n=3 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XPK3_HYDVU)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-15
Identity = 45/109 (41.28%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    1 ELTMRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKGQDGAVTVPRPPP---KEIEYYLRDETRGYLSQKVQI 318
            ++T+  L +SG  S  ++DGI LLG GS  F+ K+ ++V+RAS+ AIEA+ERNGG++  VYH  + LR  LK +   + +PRP     K + +Y   + RGYL+   +I
Sbjct:  121 KITLSTLWKSGAVSGRIKDGIKLLGGGSTWFEGKIDIEVTRASKSAIEAVERNGGTIKAVYHDRVALRCALKPEKYEI-MPRPARPNNKLLLWYSDPDNRGYLANPEEI 228          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: A0A4S4LFK2_9AGAM (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LFK2_9AGAM)

HSP 1 Score: 78.2 bits (191), Expect = 3.640e-15
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    4 LTMRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKGQDGAVTVPRPPPKEIEYYLRDETRGYLSQKVQI 318
            +T R+L  SGC   +V DGI LLG GS      ++++ SRASQ AI+AIE+ GG+V+  Y+  L+LR  +KGQ   +       ++I +Y+    RGYLS    +
Sbjct:  111 ITARELLLSGCVH-NVHDGIKLLGDGSEHLKSPIYIEPSRASQSAIKAIEKRGGTVICKYYNALSLRDCVKGQTDRLDAAPSRRQDIHWYMNWRNRGYLSSSALV 214          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: UPI00106CD038 (uncharacterized protein LOC114518178 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CD038)

HSP 1 Score: 77.4 bits (189), Expect = 6.700e-15
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    4 LTMRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKG-QDGAVTVPR---PPPKEIEYYLRDETRGYLSQKVQID 321
            + M  L  +G  S+ ++DG+ LLG GS  F+ K+ ++VSRAS+KAIE +ER GG V   Y+T L LR  +K  +     +PR   PPPK  +YY     RGYL+   ++D
Sbjct:  119 INMNTLWTTGAVSR-LQDGVCLLGTGSEIFNSKIDIEVSRASKKAIETVERQGGQVTCAYYTKLGLRVLVKPWKFDTKRLPRKAAPPPKLEKYYKDPSKRGYLADPQEVD 227          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: UPI001F035497 (50S ribosomal protein L15-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F035497)

HSP 1 Score: 77.4 bits (189), Expect = 8.370e-15
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    4 LTMRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKG-QDGAVTVPR---PPPKEIEYYLRDETRGYLSQKVQIDIAKQR 336
            + M  L  SG  SK + DG+ LLG GS  F+ ++ ++VSRAS+KAIE+IER GG++   Y+T L LR  LK  +     +PR   PPPK  +YY     RGYL+     D+ K+R
Sbjct:  118 IDMNTLWRSGAVSK-IGDGVCLLGTGSETFNSQIKIEVSRASKKAIESIERQGGNITCSYYTKLGLRVLLKPWKFNEKRLPRRAAPPPKLEKYYRDPSKRGYLADHE--DVKKER 229          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: A0A2H3J7U0_WOLCO (Ribosomal protein L15 n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J7U0_WOLCO)

HSP 1 Score: 77.0 bits (188), Expect = 1.030e-14
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    4 LTMRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKGQDGAVTVPRPPPKEIEYYLRDETRGYLS 303
            +T R+L  SGC  + V DG+ +LG GS+     +H+  SRASQ AI AIE+ GGSV+  Y+ PL LR  +KG+   +       ++I +Y     RGYLS
Sbjct:  113 ITARELLLSGCVHQ-VHDGVKILGNGSQFLKSPIHINASRASQSAIRAIEKLGGSVICNYYNPLALRDCVKGRTDRLQAAPTHRRDILWYTNWHNRGYLS 211          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: A0A7S0NRH6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NRH6_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.250e-14
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    4 LTMRDLRESGCASKHVRD-GIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKGQDGAVT---VPRP---PPKEIEYYLRDETRGYL 300
            +T R +R+SG  +   R  G+ LLG G+ RF   + ++V  A++ AIEA+ER GG++ TVY++ LT+R HLK          +PRP   PPK +  Y+  E RGYL
Sbjct:   18 ITARTMRDSGLLTLRQRHAGVKLLGGGASRFSTPISIEVQEATKVAIEAVERAGGTITTVYYSRLTMRAHLKPDKILAKGRLLPRPALPPPKLMRRYVDPEKRGYL 123          
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Match: A0A4Y7QCA2_9AGAM (Ribosomal protein L15 n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QCA2_9AGAM)

HSP 1 Score: 75.1 bits (183), Expect = 5.560e-14
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    4 LTMRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERNGGSVVTVYHTPLTLRHHLKGQDGAVTVPRPPPKEIEYYLRDETRGYLS 303
            +T R+L  SGC   +V DGI LLG GS     ++H+  SRASQ AIEAIER GG+V   ++  L LR  +KG+   +       ++I +Y     RGYLS
Sbjct:  112 ITARELLLSGCVH-NVHDGIKLLGDGSEHLRSEIHITPSRASQSAIEAIERLGGTVFCKHYNVLALRDCVKGRTDRIAAAPTRKQDIGWYTNWRNRGYLS 210          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115510.3216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0N7L6F7_PLAHL2.490e-1846.79Ribosomal protein l15 n=1 Tax=Plasmopara halstedii... [more]
A0A2A9NHI3_9AGAR6.530e-1842.72Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A7M5V3H3_9CNID1.370e-1741.5939S ribosomal protein L15, mitochondrial n=1 Tax=C... [more]
A0A8B6XPK3_HYDVU1.570e-1541.2839S ribosomal protein L15, mitochondrial n=3 Tax=H... [more]
A0A4S4LFK2_9AGAM3.640e-1540.00Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
UPI00106CD0386.700e-1541.82uncharacterized protein LOC114518178 n=1 Tax=Dendr... [more]
UPI001F0354978.370e-1543.4850S ribosomal protein L15-like n=1 Tax=Xenia sp. C... [more]
A0A2H3J7U0_WOLCO1.030e-1442.00Ribosomal protein L15 n=1 Tax=Wolfiporia cocos (st... [more]
A0A7S0NRH6_9EUKA1.250e-1441.51Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A4Y7QCA2_9AGAM5.560e-1443.00Ribosomal protein L15 n=1 Tax=Rickenella mellea Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115510contigM-pyrifera_M_contig115510:203..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog4787.PITG_20116T0
Preferred nameMRPL15
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034097,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070125,GO:0070126,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830,GO:1990904
EggNOG free text desc.Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
EggNOG OGs3QBT0@4776,COG0200@1,KOG0846@2759
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size354
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.8247643-CDS-M-pyrifera_M_contig115510:202..5471622815670.8247643-CDS-M-pyrifera_M_contig115510:202..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115510 203..547 -
1692277514.1612365-CDS-M-pyrifera_M_contig115510:202..5471692277514.1612365-CDS-M-pyrifera_M_contig115510:202..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115510 203..547 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.8458817-UTR-M-pyrifera_M_contig115510:547..5561622815670.8458817-UTR-M-pyrifera_M_contig115510:547..556Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115510 548..556 -
1692277514.1751435-UTR-M-pyrifera_M_contig115510:547..5561692277514.1751435-UTR-M-pyrifera_M_contig115510:547..556Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115510 548..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115510.3216.1prot_M-pyrifera_M_contig115510.3216.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115510 203..547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115510.3216.1

>prot_M-pyrifera_M_contig115510.3216.1 ID=prot_M-pyrifera_M_contig115510.3216.1|Name=mRNA_M-pyrifera_M_contig115510.3216.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MRDLRESGCASKHVRDGIALLGKGSRRFDKKVHLKVSRASQKAIEAIERN
GGSVVTVYHTPLTLRHHLKGQDGAVTVPRPPPKEIEYYLRDETRGYLSQK
VQIDIAKQRLQERA*
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mRNA from alignment at M-pyrifera_M_contig115510:203..556-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115510.3216.1 ID=mRNA_M-pyrifera_M_contig115510.3216.1|Name=mRNA_M-pyrifera_M_contig115510.3216.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig115510:203..556- (Macrocystis pyrifera P11B4 male)
GAGTTGACCATGCGCGATTTGAGGGAATCGGGGTGTGCCAGCAAGCATGT GCGGGACGGCATTGCGCTTCTCGGCAAAGGGTCCAGGCGGTTCGACAAGA AAGTGCACCTCAAAGTCTCCAGGGCCTCGCAAAAGGCCATTGAAGCCATC GAGAGGAACGGAGGATCCGTCGTCACAGTCTACCACACCCCACTGACGCT CAGACACCACCTCAAGGGGCAGGATGGCGCCGTCACCGTGCCCAGACCGC CCCCAAAAGAAATCGAATACTACCTCAGAGACGAAACCAGGGGATACCTC TCCCAAAAGGTGCAGATCGACATTGCAAAGCAGAGGCTGCAGGAGAGGGC CTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115510:203..556-

>mRNA_M-pyrifera_M_contig115510.3216.1 ID=mRNA_M-pyrifera_M_contig115510.3216.1|Name=mRNA_M-pyrifera_M_contig115510.3216.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig115510:203..556- (Macrocystis pyrifera P11B4 male)
ATGCGCGATTTGAGGGAATCGGGGTGTGCCAGCAAGCATGTGCGGGACGG
CATTGCGCTTCTCGGCAAAGGGTCCAGGCGGTTCGACAAGAAAGTGCACC
TCAAAGTCTCCAGGGCCTCGCAAAAGGCCATTGAAGCCATCGAGAGGAAC
GGAGGATCCGTCGTCACAGTCTACCACACCCCACTGACGCTCAGACACCA
CCTCAAGGGGCAGGATGGCGCCGTCACCGTGCCCAGACCGCCCCCAAAAG
AAATCGAATACTACCTCAGAGACGAAACCAGGGGATACCTCTCCCAAAAG
GTGCAGATCGACATTGCAAAGCAGAGGCTGCAGGAGAGGGCCTAGATGCG
CGATTTGAGGGAATCGGGGTGTGCCAGCAAGCATGTGCGGGACGGCATTG
CGCTTCTCGGCAAAGGGTCCAGGCGGTTCGACAAGAAAGTGCACCTCAAA
GTCTCCAGGGCCTCGCAAAAGGCCATTGAAGCCATCGAGAGGAACGGAGG
ATCCGTCGTCACAGTCTACCACACCCCACTGACGCTCAGACACCACCTCA
AGGGGCAGGATGGCGCCGTCACCGTGCCCAGACCGCCCCCAAAAGAAATC
GAATACTACCTCAGAGACGAAACCAGGGGATACCTCTCCCAAAAGGTGCA
GATCGACATTGCAAAGCAGAGGCTGCAGGAGAGGGCCTAG
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