mRNA_M-pyrifera_M_contig11551.3214.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11551.3214.1
Unique NamemRNA_M-pyrifera_M_contig11551.3214.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11551.3214.1 vs. uniprot
Match: D7FM05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM05_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 9.470e-46
Identity = 81/107 (75.70%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 MYGSTATTPGAAQSRGLLDDSLAVQTETSNIADGVMGRLFGQRESLETAQQRLGDVRGMTDSARLHLKDMQRKAYLQKIFLYSAIAVLSILIILVAYRETTNSGRLF 321
            MYGST TTP +AQSR LLDDSLAVQ ETSN+AD VM RLFGQRE+LE+AQQRLGD+RGMTD ARLHLK+M++KA  QKI LY  IA+LSILI LV YRE TN G LF
Sbjct:    1 MYGSTTTTPSSAQSRRLLDDSLAVQNETSNMADDVMARLFGQRETLESAQQRLGDMRGMTDEARLHLKEMEQKALRQKICLYLTIALLSILICLVIYREVTNGGHLF 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11551.3214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM05_ECTSI9.470e-4675.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11551contigM-pyrifera_M_contig11551:1355..7907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000410.1
Exons3
Model size324
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11551.3214.1prot_M-pyrifera_M_contig11551.3214.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11551 1355..7907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.7561195-CDS-M-pyrifera_M_contig11551:1354..14231622815670.7561195-CDS-M-pyrifera_M_contig11551:1354..1423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11551 1355..1423 +
1692277514.1323931-CDS-M-pyrifera_M_contig11551:1354..14231692277514.1323931-CDS-M-pyrifera_M_contig11551:1354..1423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11551 1355..1423 +
1622815670.7679093-CDS-M-pyrifera_M_contig11551:6015..61021622815670.7679093-CDS-M-pyrifera_M_contig11551:6015..6102Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11551 6016..6102 +
1692277514.142354-CDS-M-pyrifera_M_contig11551:6015..61021692277514.142354-CDS-M-pyrifera_M_contig11551:6015..6102Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11551 6016..6102 +
1622815670.780321-CDS-M-pyrifera_M_contig11551:7739..79071622815670.780321-CDS-M-pyrifera_M_contig11551:7739..7907Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11551 7740..7907 +
1692277514.1505191-CDS-M-pyrifera_M_contig11551:7739..79071692277514.1505191-CDS-M-pyrifera_M_contig11551:7739..7907Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11551 7740..7907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11551.3214.1

>prot_M-pyrifera_M_contig11551.3214.1 ID=prot_M-pyrifera_M_contig11551.3214.1|Name=mRNA_M-pyrifera_M_contig11551.3214.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MYGSTATTPGAAQSRGLLDDSLAVQTETSNIADGVMGRLFGQRESLETAQ
QRLGDVRGMTDSARLHLKDMQRKAYLQKIFLYSAIAVLSILIILVAYRET
TNSGRLF*
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mRNA from alignment at M-pyrifera_M_contig11551:1355..7907+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11551.3214.1 ID=mRNA_M-pyrifera_M_contig11551.3214.1|Name=mRNA_M-pyrifera_M_contig11551.3214.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6553bp|location=Sequence derived from alignment at M-pyrifera_M_contig11551:1355..7907+ (Macrocystis pyrifera P11B4 male)
ATGTATGGGTCGACGGCAACAACGCCAGGCGCAGCTCAAAGCCGGGGGCT
GCTCGATGATTCTTTGGCGGTGAGTAGAAGTCCAGGTTTGTTGAACACCG
CGATGCGGCTGACTGCTGCTCTGCTGCTCTACAGCGCTGTATATAAATGA
TCGTGTTGCACCCTTGCCCTTTGCTCCGTGGTTGACTTACACACACACTT
AACAGCTTGCTCGCAGTACGGTGATCTATGATTTTCATGACAGTGATGCG
AGCCTTACGCTGATGGCGTGAAGCTGTGAAGCTGTGAAGTTGTGAAAGCT
GTGAAGCTATCTGCGGCATTGAAATAGTTCATTTGTAGTTATTCCGCTGC
GCTCTTCCTGCTGTGCGTGTACTGCGTTCACTTTTTGATTTTCAAGTATT
TGACGGCCCGATATCGTGACTGCTGCTGCTGCTGCCGCTGGCATCTCGCC
CAGATCTCCGAAATGCGCAGTGCTGCTGCCGCTCCCACGCGCACTGCTGA
ATTTTGTCGATGAATGCTGAAGGATGATTTGTATTGGTGTCCCGGCAGTA
CTATCTGGTACCGCATTACTGCTTGCTGTGTACTGCTATGTACAGCAGTA
TTGGAGTGTATTATCCGCAGTATATTTTAGACGTCTCGACAGCAATACCG
GTGTATTCACGGAATTCTCAACATCCCTGGTACCCGTAATATCCTTTCAG
AACGCCCCCCGGGGCGCTTTTTTTCTGGTGGTGGAAAACATCATTCCGAG
GCGTTCTCAGAGGTGGGGGGGGCTGACTTTCGAACGATTCACCTATGTAG
AAAAGCACCCCGGGGCGAAAAGTCCCCGGGGTGTTGGCCCCTTTTTTTCT
GTGCGGGGCATCCACACAACACACACAAACACCAAGGTACCAGGTATATT
ATACAAGGTTCCCCTTCGGAGTTCTATAACCTGGTATACTACTTTTACGC
CGCGTTTTTTGCGCTGGGGTCTAGGACGTCGAGCCTACATACAACATCTA
CGAAAAATCACTACCCTGGGGTACGAAAGAAGCAGAAGACGGGCGGTTGG
GGAAGCTTGCGCCGTTCGCCGCAGGGGAACCCCCTCCGACAACAACAACA
ACGACAGCAACAGCAACAACAACAATGCCTTCGATTGATGTGAACGCCCT
GTGGGGCGGCAAAAAACATACCTGGTACCTGTGGTACCAAGTAGCCGAGA
GGTAGCTGAAAAAATAACGCCCCGGGGCGAACTCAGAAGCAAGGGGGCGC
AAAAACAAAAAAACGTGTGGCGTTCCCAAAAGTTTTTGTGCATCCCCGGC
GGTGTTTCGGGGGGTGGGGGCGTGCTCATGGACCGGGGCATTTTCAAAGG
ATACCATGTACGGTAACCAGGCATAACGACACTTATCATGCCAACTGCTG
TGTATGATATCCGCTTTTTAAGTCCGAGTGCGTACGAGGTATTTATCTTA
CATGCGTGTCGAGTCTCTAGCGCTGCACAGCCGGGGCTGCATTGCTGTAG
CTGCACTCGTAACACACAGCAGCGGTTAGACTATTAATAGAACTCCATAT
TGGCCATATCCATGGACTAGAACTCCATATTGGTCATATGTACATATTTG
TCTGGGGTCTGTGGAATTTCGCCGAACCCGGGGAGGATAGGATGATATCC
CCGGGTCGTAAATCCATCGTTACATCTACAACTGCGACGACACCAGGGAC
GAAAACGATGTTCTCCCGGGTCGATATCGCGCCGCACGTTGTGGGAACCC
CAACCCCACAGGCTCTTATCACTTACTGGTTGAGGTTCGTGGCACCGGTG
CCACCCGGAAAAGACAAGGCCCCGTTCCCAGATTAGAAATCCTTCCGTGC
ATCTACAACTGCGACAAACCAGGAACGAAGACAATGATCCCCCGGGTCGA
TGACGTCTTGCACGGTGTGGAAACCCCAACCCCACTCGCTCCGCCTCACT
TGGGGAAGATAGGGTCCCCTGATCACAAGTTCTTCCACATATGCATCTCC
AACAAACCGAGAACGACAACGGCAAGCCCCCGGGTCGATACCGCCCCGCA
CGGTATGGAAACCCCAATCCCGGGTACGCCGTTTGTGGGCTGAAGTTCAT
GAAACCGGCCGTTTTCACCAATAATGGGAGCAGGGAGGCTCAGTAAGGTC
GTTAAACCCGATCTCATAGACCTATGATTAAATATGAAGCTGTTGTGTTC
GACATACATCACCACTAACAACCTTCGTTTGGCCCAACCCGACAAGAAAA
AACAAATAGCGCGAAGCGCGCCGATTTTGGCGGTTCTATACGAGTACCGA
TACGAGCAGTTTGCAATCCTGCTGCTGCTACTAACTGTACTGGTGTGTAT
GTAGAGTTGCTGCTGGTGTACCTCAGGCAGCATGCAGCTAGTACCTGGTA
CAGCGGTGCGTGACCTTGTACGAAGCATACCACATGTACGAGGTGAGAGG
TCTGCTGTAGCCTTTAGACTTGTTACCTGGCCATCTGGCTCACTTAAAAG
TAATATTTGAAGAAAATACACACATAATTCAGCCGTGAGATTGAAGATTT
CAAGGCTATTCGCGAGTCATGAATCATGACTACTCGTAGAGGTGGGCATC
TTGCAGAAAAAAAACGGTTTGAACCGGTTATTGGAAACCCCGCAGGCGTG
TACGATTTTTTTTTTTTTTGCTGGTTTATACCCGTTAACCGGAAACCGAC
TTAATTTTTCCTGCACCTCTGAGCTCTTGGCATTTGCAAGTCGTGGTAGC
GCCCAAACAATCCCCGAAGAAATCTTGATCCCCATTCCCTCCCGATCGCT
CCCGCGAAAATGCGAAAATGTTGATTTCCCTTTCCCATCCAAACGATTCC
CACGGGAACGTCTGTTTCACCGTGGTTTTAAGTTTATCCCGTGCCGTAAG
ATATGATACGCGTCAGCCAACAACACCGGCAGTATAGCGGCAACCAACCG
GCACTAATCCCTCCGCACACCACCGCACTGGTTACTGTATTCCATTGGGT
GACAAGCGATTCCACCGGCACTATAGCGGGCAACCGGCATTATTACTACT
ACTCAACCGGCAGTATAGCGGCAACCAACCGGCACTAATCCCTCTGCACA
CTACCACACTGGTTGATCCAGTCTGGGCCAGGCGATTCCACAGACATTAT
GGCGGGCAACCGGCACTATTACTAGTCAACCTGCAGTGTGGAGGGGCCAC
TACTGTAAGGTATCACGAGTACGACTTGGCGTGTTTGTTTCGTTGGGTTT
TTGTTGTGGGCAAGGTCAGATACGTGCGATGAGATGCTTACAGCCGACAT
CGAGGCCCATACGAGACAAATCAAGTATCGTGCACGGAACGGTATTGATA
ACGATACATAAACAATAATGACTCAGTCGAGTCCGGTGAAATCCCAAGGT
GGACGTTGTCTGGGCAAAAAATCCCGTGAATTCCCGTCGTAGCTAGTCCC
GCTGGAAGATTTCCCGCGGTGGCCTTTTCCCGCGGGAAGGTTTCCCGTGG
TGATCGGTTCCCGTACAAAAACACCTGTGAATTCCCGTAACGCCGAATTC
CCGCGGGAAAGGGTTCCTCCCGCGGCCGGTTCCTGTGCAAAAAAAACGTG
AATTTCCGTGTTGGCTAAATCCCGCAGGAAAAGCTGCCAAGATAAAAAAG
CGTGACGGAGGACTGCTGGGGAGAAGTAGAGGAGTAATGTGTCGAGTGCT
AATTCGTGTTGGTACGAGAGAGGCCTTGGTGCAAAAGCGAGAAGTTTTCG
GAGCGTCGGATCCGCGGGCCGGATCCGCGGGCCAGCAGAAAATGCTGCGT
GGGTCATGCTGGCACCTGGCCCGTATGTTTTTCGACACTTCCTGACCCGA
CCCGGCCCAACCCGGCCCGACCCGACCCGTGAGATTTGAAAACGTATTGA
CCCGACACGATCCGACCCGACCCGACCGTACCCGACCCGTGAAATGTTAA
CACCTCCTGACCCGAGCCGCGGGTCAGGTCATGACTAGAGCTGGGCACCT
AGAGGAAACATAATATTCAAACGAAAACCCGACTAGGAGGCGTTATTCTT
ATATAACCGAAAACCGGTTCAAACCGGGTTTTTTTAGAGCCGGTTTAAAC
CGGTTAGCCGAAAACCGGTGTCAACCGGATGGTAATATGTAACGCCTCCA
AATCATTGAACGTAACGGTTTAGATGTATCCAGCAAAGTACATGCTGGTC
ATGTGATTTCCGAATCACTGGCAGCGTACTGCTAGAACACGAGGTAGTAT
GGGGGTCCATCGTTAATAGGATCTATGGGATACATAAAAACCTATATATT
TACCTATTTTGACTAACAATATTTGGTCTTATTTACTATGGACCCCCGGA
ATAGTATGGTACAACAACACGGCATATTTTACTGGGTGACGTGAATTCCA
GTTATAAATAACTTTATAGAAGGCATTGCCGACATGTAGTATAGGTACTA
TTAATAGAAGGCTGCGCTCCGCGGGCGACTGGCTGTACGCTCCCCGTTGC
GCTCGCTTAAGGAAGCAGATATATAGATCAGAGTGTAAAGCAGACAGAGA
CCGGAGGATGCTCACGACTTGCTGCAATGGAATCATGTTTTACACGGGAA
ACCTCTGTTGATGCAATGCAACCTCTTTTTGGCGTTTCTTGTGGGCCGAT
TCGATGCACAGGTGCAAACGGAAACTTCGAATATTGCGGACGGCGTCATG
GGGCGATTGTTCGGACAGCGAGAGTCGTTGGAAACAGCGCAGCAAAGGGT
GAGAAGCTAACGCACCCTGGGCAGATCACGATCTACAGTAGGTCATCGTC
TAGGTCCTGTGTTGGAACTATCTCAACGAAGGGCGAGGAGCTAGTGTAAG
ATAGGGTAGCCCTGACTAGGCAACTCGCGCCGGCGGATATTTTGCATCAA
GGTATGCCTTACTGTCGTCAACTGGGTGCGCTGGCGGCAGGCCAATGAAG
TATAAACAATGCTTCTAAATATTAGGGCTATTTGTGTTTTATTATCTTTG
TCAAACATTCCTTACCACTTTGGGCGTGAATGTAAGCGCAGGAGCCATCC
CACGGTAGGAGTGTACCAGACGTTCCTGAGCCCCTCACATTAGGAGCTAG
CTCAATATCTCACCCGATACAATACTTGGAAGAAATTTGTTCGTGCCACC
CGACCGGTACTTCTATGCGCTAGTCCTGAAACGAATATGCGAGTAAAATG
TTCATCCTAACTGCTGGTTCCTCACGTAAGAAACTCAATCGGTCACAAAC
GTTTGGCCCAAGAAGAGCAACCCGTACCGTGGGGTGACTTATAGCTTGGT
CTTCATGTTAGTGTCTAAACGGTCCTTATATTTCCGAACAGAGTGGTATA
TTTTCTGACAAACAGCGGTACACCGACATTGACGGCATTGTAATACTCTA
CTGCAGTACACGGCCGAGTCATTCTTACTGTAGTGCAGGCCCGCCCCATT
GTGTGGCACCCGGTATATCTTCTTGCGTCACCCTCATTCAACAAATGCGA
AGCCCCACTCGCCCTTCCAAAGGGATTTCCTTGCACGGCGTGTATTTTCG
GAAAAATCGGCTGGACGGCGCGTTGTCTGCAGCCTCTCCTCCCGCTCAAG
ACTCCTGTGGGGTCCATGCGTTGTACTGGTAGGCGTTGGTGTAAGTTTTT
TGTTTGCTTGTTTGTTTGTTTTATCTTCCGGCGGAATGGTGAAGATTAAA
CTTGAGCTCGCCACATTTCCACTTATAAAATACGTGTCGTGTGCAAGATA
TCAGCTCGTTTCGCTCGTATTGACAGTCGTGGTAGAACGTCACGGGGGGG
GGGGGGTTGTTGTGGCCCTGAGCTAGTGTTGAGCGCAGTGATTCGGTAGG
ATTTCGCGACTAATACCTACCAGGTAGTCGGTGGGTGCCGCTAGCCAACT
AATTGGCTTTAGTCGCCAAGTCGGCTGGCGAAGCCAGCTGGTGGCCAGGC
AACTGGCCGACCTGAATCAGGTGCACAAAGCGAACCAAATCAGTCCCCCC
CCCCGGCCAGGCGGGCCCGCCCAAACCAAAACCTATTCCGCATCCAGCAA
TTCTTCGTACAAGTATGGAAACCCAATAAATCGAATAGTCGATATCTCCG
GGAAACGACTGTATAACCAGGGTTCCGACTAATAACTAGTTGGTGACTTA
AGTCGTGCCGACTCGCCGCTCTCTGTACTACTGTAGTCAACTCTGACTGT
TGAGTATTGGTATTTACAGTTTGTCCTCGTATCGGGGGTAGAAATGTTGG
GAGAAGCTGAAGATGAATGACGTCCCGCTGTAAACCATTTACCAGGTACC
TGGTACCCTGTATGAGTGATCACTTGTTAGTTGTCCCCACCTGCTCCGTC
GTTTTTTTGTTCGTCGTCTTGTCGTGTGGCGTCAGTTGGGAGACGTGCGA
GGAATGACTGACAGCGCGCGGTTACACCTGAAAGACATGCAACGGAAAGC
CTACCTACAAAAAATCTTCCTGTACTCCGCCATAGCGGTGTTGTCGATCC
TCATCATTCTGGTGGCATACCGGGAGACGACCAACAGCGGACGCTTGTTT
TAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11551:1355..7907+

>mRNA_M-pyrifera_M_contig11551.3214.1 ID=mRNA_M-pyrifera_M_contig11551.3214.1|Name=mRNA_M-pyrifera_M_contig11551.3214.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig11551:1355..7907+ (Macrocystis pyrifera P11B4 male)
ATGTATGGGTCGACGGCAACAACGCCAGGCGCAGCTCAAAGCCGGGGGCT
GCTCGATGATTCTTTGGCGATGTATGGGTCGACGGCAACAACGCCAGGCG
CAGCTCAAAGCCGGGGGCTGCTCGATGATTCTTTGGCGGTGCAAACGGAA
ACTTCGAATATTGCGGACGGCGTCATGGGGCGATTGTTCGGACAGCGAGA
GTCGTTGGAAACAGCGCAGCAAAGGGTGCAAACGGAAACTTCGAATATTG
CGGACGGCGTCATGGGGCGATTGTTCGGACAGCGAGAGTCGTTGGAAACA
GCGCAGCAAAGGTTGGGAGACGTGCGAGGAATGACTGACAGCGCGCGGTT
ACACCTGAAAGACATGCAACGGAAAGCCTACCTACAAAAAATCTTCCTGT
ACTCCGCCATAGCGGTGTTGTCGATCCTCATCATTCTGGTGGCATACCGG
GAGACGACCAACAGCGGACGCTTGTTTTAATTGGGAGACGTGCGAGGAAT
GACTGACAGCGCGCGGTTACACCTGAAAGACATGCAACGGAAAGCCTACC
TACAAAAAATCTTCCTGTACTCCGCCATAGCGGTGTTGTCGATCCTCATC
ATTCTGGTGGCATACCGGGAGACGACCAACAGCGGACGCTTGTTTTAA
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