mRNA_M-pyrifera_M_contig115439.3202.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115439.3202.1
Unique NamemRNA_M-pyrifera_M_contig115439.3202.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115439.3202.1 vs. uniprot
Match: A0A7Y2ICT1_9ACTN (Class I SAM-dependent methyltransferase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2ICT1_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 1.260e-10
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 GFRPDTYGEAFADVYGVWYGSITDAEATAAFLARRCSEGVILELGVG 147
            GF P TYG +FADVY  WY +I+DA ATA F+A+RC   V++ELG+G
Sbjct:   10 GFGPGTYGASFADVYDDWYPAISDAAATARFVAKRCQPPVVIELGLG 56
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BLAST of mRNA_M-pyrifera_M_contig115439.3202.1 vs. uniprot
Match: A0A7K1B2X9_9ACTN (Methyltransferase domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1B2X9_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 9.440e-10
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 MDGFRPDTYGEAFADVYGVWYGSITDAEATAAFLARRCS-EGVILELGVG 147
            M GFR D+YG+AFADVY  WY  +TD +AT AF+A     +G +LELGVG
Sbjct:   13 MRGFRSDSYGDAFADVYDEWYADVTDLDATVAFVAALAGPDGSVLELGVG 62
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BLAST of mRNA_M-pyrifera_M_contig115439.3202.1 vs. uniprot
Match: A0A7V9B2A5_9ACTN (Class I SAM-dependent methyltransferase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B2A5_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 4.570e-7
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 MDGFRPDTYGEAFADVYGVWYGSITDAEATAAFLARRCSEGVILELGVG 147
            MDG+ P+TYG+AF DVY  WYG++ D       L      G +LELGVG
Sbjct:    1 MDGYLPETYGDAFVDVYDEWYGNVGDPFHAVPRLVELAGGGPVLELGVG 49
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BLAST of mRNA_M-pyrifera_M_contig115439.3202.1 vs. uniprot
Match: UPI001AA0A012 (methyltransferase domain-containing protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0A012)

HSP 1 Score: 49.7 bits (117), Expect = 1.150e-5
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 MDGFRPDTYGEAFADVYGVWYGSITDAEATAAFLARRCSEGVILELGVG 147
            M+G+RP +YG+AFADVY  WY  +   ++ A  +    + G +LELG G
Sbjct:    1 MEGYRPASYGDAFADVYDDWYRDLPGTQSCATTIEELAAGGPVLELGTG 49
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115439.3202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7Y2ICT1_9ACTN1.260e-1059.57Class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]
A0A7K1B2X9_9ACTN9.440e-1058.00Methyltransferase domain-containing protein n=2 Ta... [more]
A0A7V9B2A5_9ACTN4.570e-748.98Class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]
UPI001AA0A0121.150e-542.86methyltransferase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115439contigM-pyrifera_M_contig115439:420..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.2009728-CDS-M-pyrifera_M_contig115439:419..5661622815670.2009728-CDS-M-pyrifera_M_contig115439:419..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115439 420..566 +
1692277513.9413428-CDS-M-pyrifera_M_contig115439:419..5661692277513.9413428-CDS-M-pyrifera_M_contig115439:419..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115439 420..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115439.3202.1prot_M-pyrifera_M_contig115439.3202.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115439 420..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115439.3202.1

>prot_M-pyrifera_M_contig115439.3202.1 ID=prot_M-pyrifera_M_contig115439.3202.1|Name=mRNA_M-pyrifera_M_contig115439.3202.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MDGFRPDTYGEAFADVYGVWYGSITDAEATAAFLARRCSEGVILELGVG
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mRNA from alignment at M-pyrifera_M_contig115439:420..566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115439.3202.1 ID=mRNA_M-pyrifera_M_contig115439.3202.1|Name=mRNA_M-pyrifera_M_contig115439.3202.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig115439:420..566+ (Macrocystis pyrifera P11B4 male)
ATGGATGGTTTTCGACCTGACACCTACGGTGAGGCGTTCGCCGACGTCTA
CGGCGTTTGGTACGGCAGCATCACCGATGCCGAGGCGACGGCTGCCTTCC
TCGCCCGACGCTGCTCCGAAGGGGTCATCCTCGAGCTGGGGGTCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115439:420..566+

>mRNA_M-pyrifera_M_contig115439.3202.1 ID=mRNA_M-pyrifera_M_contig115439.3202.1|Name=mRNA_M-pyrifera_M_contig115439.3202.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig115439:420..566+ (Macrocystis pyrifera P11B4 male)
ATGGATGGTTTTCGACCTGACACCTACGGTGAGGCGTTCGCCGACGTCTA
CGGCGTTTGGTACGGCAGCATCACCGATGCCGAGGCGACGGCTGCCTTCC
TCGCCCGACGCTGCTCCGAAGGGGTCATCCTCGAGCTGGGGGTCGGCATG
GATGGTTTTCGACCTGACACCTACGGTGAGGCGTTCGCCGACGTCTACGG
CGTTTGGTACGGCAGCATCACCGATGCCGAGGCGACGGCTGCCTTCCTCG
CCCGACGCTGCTCCGAAGGGGTCATCCTCGAGCTGGGGGTCGGC
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