mRNA_M-pyrifera_M_contig115357.3195.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115357.3195.1
Unique NamemRNA_M-pyrifera_M_contig115357.3195.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115357.3195.1 vs. uniprot
Match: A0A2D9CJ39_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CJ39_9BACT)

HSP 1 Score: 109 bits (273), Expect = 2.160e-25
Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 1 
Query:    1 LSNVGIVALSATRDRADPAVCRLFVRVQSTSSDPIGIILRVLDGDEELARVPIALDAVEGDTPQNVAT-TIPVRIERSADLRVQFDRTDALAIDNTAWIFVPDPSPVRIAVVADG-LANPVLLDVLEAVA 384
            +SN+GIVALSA RDR D  +CR+FVRV  + S PI  ++RV + +  +   PIA DA      Q+ AT T  +R+ R A LRV+    DALA DN AW+ VP P PVR+ ++A G +A+P+L+D LE VA
Sbjct:  237 ISNLGIVALSAQRDRVDTELCRVFVRVLRSDSGPIAGVVRVYEDEALIESAPIAFDA-----GQDSATHTFELRLVREALLRVELGGEDALATDNAAWVAVPSPDPVRVTIIAPGGIADPLLMDYLEVVA 361
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BLAST of mRNA_M-pyrifera_M_contig115357.3195.1 vs. uniprot
Match: A0A6N2EE64_9BACT (VWA domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6N2EE64_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.970e-7
Identity = 41/120 (34.17%), Postives = 57/120 (47.50%), Query Frame = 1 
Query:    1 LSNVGIVALSATRDRADPAVCRLFVRVQST----SSDPIGIILRVLDGDEELARVPIALDAVEGD-TPQNVATTIPVRIERSADLRVQFDRTDALAIDNTAWIFV-PDPSPVRIAVVADG 342
            + N+GIVALSATRD  DPAV R+F R+ +     +S  + + +R    +     VP A     GD  P        +       L +  DR+DAL  DN A + V P  +P  + V  DG
Sbjct:  236 VDNLGIVALSATRDYEDPAVLRVFARIHNARMQETSTSVTLRMRGEAAERRAVTVPAASVDENGDIVPGRRGLAFEIEDTEGGVLSLDLDRSDALGADNAAAVVVQPAGAPALLLVTPDG 355
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BLAST of mRNA_M-pyrifera_M_contig115357.3195.1 vs. uniprot
Match: A0A5C5W3Q0_9BACT (VWFA domain-containing protein n=1 Tax=Phycisphaerae bacterium RAS1 TaxID=2528034 RepID=A0A5C5W3Q0_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 8.100e-6
Identity = 41/140 (29.29%), Postives = 68/140 (48.57%), Query Frame = 1 
Query:    7 NVGIVALSATRDRADPAVCRLFVRVQSTSSDPIGIILRV-LDGDEELARV------PIALDAVEG---------DTPQNVATTIP--VRIERSADLRVQFDRTDALAIDNTAWIFVPDPSPVRIAVVADGLANPVLLDVL 372
            NVGI AL   R   +P +  +F++V++  + P+   + + ++G     RV      P A     G         D  Q  + TI   + ++ +A L  +  RTDALA+DN+AW  +P P  +++ V + G  NP +  VL
Sbjct:  245 NVGITALRTQRSYEEPELLDVFLQVENFGATPVQTDVSIHINGQLSQGRVRTVSLGPAAPRRDVGAETRPEPGADAGQGASRTISFELTVDEAAVLEARLSRTDALAVDNSAWAVIPPPRKLKVLVASAG--NPFIESVL 382
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BLAST of mRNA_M-pyrifera_M_contig115357.3195.1 vs. uniprot
Match: A0A7C3PA69_9BACT (VWA domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C3PA69_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 2.060e-5
Identity = 44/131 (33.59%), Postives = 61/131 (46.56%), Query Frame = 1 
Query:    7 NVGIVALSATRDRADPAVCRLFVRVQSTSSDPIGIILRVLDGDEELARVPIALDAVEGDTPQNVATTIPVRIERSADLRVQFDRT----DALAIDNTAWIFVPDPSPVRIAVVA----DGLANPVLLDVLE 375
            N+GIVALSA RD  DPAV R+F RVQST  +   + L +      +   P+ +    GD P  V+ T  +         V    T    DALA DN     +  P  +R+ +V+       A+  L+D LE
Sbjct:  286 NLGIVALSAKRDYDDPAVVRVFARVQSTLPEEAHVSLALGFRGNVIETKPLVVPGA-GDHPGEVSHTFELNTAEGGPATVALLGTGAAGDALASDNICATVLQAPRSLRLLLVSRAGEPSDADYALIDALE 415
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115357.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2D9CJ39_9BACT2.160e-2548.46Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A6N2EE64_9BACT1.970e-734.17VWA domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A5C5W3Q0_9BACT8.100e-629.29VWFA domain-containing protein n=1 Tax=Phycisphaer... [more]
A0A7C3PA69_9BACT2.060e-533.59VWA domain-containing protein n=1 Tax=Phycisphaera... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115357contigM-pyrifera_M_contig115357:48..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.8152037-CDS-M-pyrifera_M_contig115357:47..4311622815669.8152037-CDS-M-pyrifera_M_contig115357:47..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115357 48..431 -
1692277513.7556033-CDS-M-pyrifera_M_contig115357:47..4311692277513.7556033-CDS-M-pyrifera_M_contig115357:47..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115357 48..431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115357.3195.1prot_M-pyrifera_M_contig115357.3195.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115357 48..431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115357.3195.1

>prot_M-pyrifera_M_contig115357.3195.1 ID=prot_M-pyrifera_M_contig115357.3195.1|Name=mRNA_M-pyrifera_M_contig115357.3195.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LSNVGIVALSATRDRADPAVCRLFVRVQSTSSDPIGIILRVLDGDEELAR
VPIALDAVEGDTPQNVATTIPVRIERSADLRVQFDRTDALAIDNTAWIFV
PDPSPVRIAVVADGLANPVLLDVLEAVA
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mRNA from alignment at M-pyrifera_M_contig115357:48..431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115357.3195.1 ID=mRNA_M-pyrifera_M_contig115357.3195.1|Name=mRNA_M-pyrifera_M_contig115357.3195.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig115357:48..431- (Macrocystis pyrifera P11B4 male)
CTTTCCAATGTCGGGATCGTTGCGCTCAGCGCGACAAGAGATCGCGCTGA
TCCCGCAGTCTGTCGGCTGTTCGTGCGTGTGCAATCGACGAGCAGCGATC
CGATCGGGATTATTCTTCGTGTACTCGACGGCGACGAAGAGCTCGCAAGA
GTCCCGATCGCGTTGGACGCTGTTGAGGGAGACACGCCGCAGAATGTAGC
GACAACGATTCCCGTTCGCATCGAGCGGAGTGCTGATCTGCGTGTGCAGT
TTGATCGCACTGATGCGCTTGCGATTGACAACACGGCATGGATCTTTGTT
CCCGATCCGAGTCCTGTGCGGATCGCAGTTGTCGCTGACGGACTCGCGAA
TCCTGTGCTGCTCGACGTGCTTGAAGCTGTTGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115357:48..431-

>mRNA_M-pyrifera_M_contig115357.3195.1 ID=mRNA_M-pyrifera_M_contig115357.3195.1|Name=mRNA_M-pyrifera_M_contig115357.3195.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig115357:48..431- (Macrocystis pyrifera P11B4 male)
CTTTCCAATGTCGGGATCGTTGCGCTCAGCGCGACAAGAGATCGCGCTGA
TCCCGCAGTCTGTCGGCTGTTCGTGCGTGTGCAATCGACGAGCAGCGATC
CGATCGGGATTATTCTTCGTGTACTCGACGGCGACGAAGAGCTCGCAAGA
GTCCCGATCGCGTTGGACGCTGTTGAGGGAGACACGCCGCAGAATGTAGC
GACAACGATTCCCGTTCGCATCGAGCGGAGTGCTGATCTGCGTGTGCAGT
TTGATCGCACTGATGCGCTTGCGATTGACAACACGGCATGGATCTTTGTT
CCCGATCCGAGTCCTGTGCGGATCGCAGTTGTCGCTGACGGACTCGCGAA
TCCTGTGCTGCTCGACGTGCTTGAAGCTGTTGCTCTTTCCAATGTCGGGA
TCGTTGCGCTCAGCGCGACAAGAGATCGCGCTGATCCCGCAGTCTGTCGG
CTGTTCGTGCGTGTGCAATCGACGAGCAGCGATCCGATCGGGATTATTCT
TCGTGTACTCGACGGCGACGAAGAGCTCGCAAGAGTCCCGATCGCGTTGG
ACGCTGTTGAGGGAGACACGCCGCAGAATGTAGCGACAACGATTCCCGTT
CGCATCGAGCGGAGTGCTGATCTGCGTGTGCAGTTTGATCGCACTGATGC
GCTTGCGATTGACAACACGGCATGGATCTTTGTTCCCGATCCGAGTCCTG
TGCGGATCGCAGTTGTCGCTGACGGACTCGCGAATCCTGTGCTGCTCGAC
GTGCTTGAAGCTGTTGCT
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