mRNA_M-pyrifera_M_contig115335.3190.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115335.3190.1
Unique NamemRNA_M-pyrifera_M_contig115335.3190.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115335.3190.1 vs. uniprot
Match: UPI000E0FEEF0 (trypsin-like serine protease n=1 Tax=Synechococcus sp. N32 TaxID=2575514 RepID=UPI000E0FEEF0)

HSP 1 Score: 53.9 bits (128), Expect = 1.060e-6
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    4 KLYMYFSSSLYVCSGTMIGNGLVLTARHCIYDIDSRKW--AERVYVAPGMTGFTN 162
            KL+M F +S YVCSG+MIG G+V+TA HCI +    K   A+ VY  PG T   N
Sbjct:  126 KLFMRFGNSNYVCSGSMIGKGIVVTAAHCIANWGQGKSGIADEVYFIPGATKRAN 180
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BLAST of mRNA_M-pyrifera_M_contig115335.3190.1 vs. uniprot
Match: UPI000E0E9A98 (trypsin-like serine protease n=1 Tax=Synechococcus sp. N32 TaxID=2575514 RepID=UPI000E0E9A98)

HSP 1 Score: 52.8 bits (125), Expect = 2.530e-6
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    4 KLYMYFSSSLYVCSGTMIGNGLVLTARHCIYDIDS--RKWAERVYVAPGMTGFTN 162
            KL+M F +S YVCS ++IG GL +TA HC+++       WA  +Y  P  T  +N
Sbjct:   13 KLHMRFGNSAYVCSASLIGKGLAVTAAHCVHEYGKGLSGWATDIYFVPAATSSSN 67
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BLAST of mRNA_M-pyrifera_M_contig115335.3190.1 vs. uniprot
Match: A0A7S2TM98_9EUKA (Serine protease n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TM98_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 9.520e-6
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   16 YFSSSLYVCSGTMIGNGLVLTARHCIYDIDSRKWAE-RVYVAPGMTGFTNWPVG 174
            + +   +VC+G +IGN +VLT  HC++DID+RKW   R    P   G  N P G
Sbjct:  254 FIAQGSHVCTGALIGNRVVLTNAHCVFDIDTRKWFNARFQFCPARNGRLNDPYG 307
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BLAST of mRNA_M-pyrifera_M_contig115335.3190.1 vs. uniprot
Match: A0A2V0NXK8_9CHLO (Peptidase S1 domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NXK8_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 4.470e-5
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    4 KLYMYFSSSLYVCSGTMIGNGLVLTARHCIYDIDSRKWAERVYVAP 141
            KLYM F    YVCSG++IG  LV+TA HC+ D  S   A +V  +P
Sbjct:  156 KLYMTFPDGNYVCSGSLIGKSLVVTAAHCLVDFGSVVKASKVSFSP 201
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115335.3190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI000E0FEEF01.060e-650.91trypsin-like serine protease n=1 Tax=Synechococcus... [more]
UPI000E0E9A982.530e-641.82trypsin-like serine protease n=1 Tax=Synechococcus... [more]
A0A7S2TM98_9EUKA9.520e-642.59Serine protease n=1 Tax=Lotharella oceanica TaxID=... [more]
A0A2V0NXK8_9CHLO4.470e-550.00Peptidase S1 domain-containing protein n=1 Tax=Rap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115335contigM-pyrifera_M_contig115335:351..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.5154684-UTR-M-pyrifera_M_contig115335:350..3621622815669.5154684-UTR-M-pyrifera_M_contig115335:350..362Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115335 351..362 +
1692277513.5808954-UTR-M-pyrifera_M_contig115335:350..3621692277513.5808954-UTR-M-pyrifera_M_contig115335:350..362Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115335 351..362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.5265741-CDS-M-pyrifera_M_contig115335:362..5631622815669.5265741-CDS-M-pyrifera_M_contig115335:362..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115335 363..563 +
1692277513.6013458-CDS-M-pyrifera_M_contig115335:362..5631692277513.6013458-CDS-M-pyrifera_M_contig115335:362..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115335 363..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115335.3190.1prot_M-pyrifera_M_contig115335.3190.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115335 363..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115335.3190.1

>prot_M-pyrifera_M_contig115335.3190.1 ID=prot_M-pyrifera_M_contig115335.3190.1|Name=mRNA_M-pyrifera_M_contig115335.3190.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MYFSSSLYVCSGTMIGNGLVLTARHCIYDIDSRKWAERVYVAPGMTGFTN
WPVGVHAAHSFGGWTAY
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mRNA from alignment at M-pyrifera_M_contig115335:351..563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115335.3190.1 ID=mRNA_M-pyrifera_M_contig115335.3190.1|Name=mRNA_M-pyrifera_M_contig115335.3190.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig115335:351..563+ (Macrocystis pyrifera P11B4 male)
GTCAAGCTGTACATGTACTTCTCGTCATCCCTCTACGTCTGCTCGGGAAC
CATGATCGGAAACGGGCTCGTGCTCACCGCCCGACACTGCATCTATGACA
TTGACTCGCGCAAGTGGGCCGAGCGGGTGTACGTGGCGCCGGGCATGACC
GGCTTCACCAACTGGCCCGTGGGCGTACACGCGGCGCACTCGTTCGGAGG
CTGGACGGCGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115335:351..563+

>mRNA_M-pyrifera_M_contig115335.3190.1 ID=mRNA_M-pyrifera_M_contig115335.3190.1|Name=mRNA_M-pyrifera_M_contig115335.3190.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig115335:351..563+ (Macrocystis pyrifera P11B4 male)
ATGTACTTCTCGTCATCCCTCTACGTCTGCTCGGGAACCATGATCGGAAA
CGGGCTCGTGCTCACCGCCCGACACTGCATCTATGACATTGACTCGCGCA
AGTGGGCCGAGCGGGTGTACGTGGCGCCGGGCATGACCGGCTTCACCAAC
TGGCCCGTGGGCGTACACGCGGCGCACTCGTTCGGAGGCTGGACGGCGTA
TATGTACTTCTCGTCATCCCTCTACGTCTGCTCGGGAACCATGATCGGAA
ACGGGCTCGTGCTCACCGCCCGACACTGCATCTATGACATTGACTCGCGC
AAGTGGGCCGAGCGGGTGTACGTGGCGCCGGGCATGACCGGCTTCACCAA
CTGGCCCGTGGGCGTACACGCGGCGCACTCGTTCGGAGGCTGGACGGCGT
AT
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