mRNA_M-pyrifera_M_contig115330.3189.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115330.3189.1
Unique NamemRNA_M-pyrifera_M_contig115330.3189.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115330.3189.1 vs. uniprot
Match: A0A7C2WSJ7_9BACT (SGNH/GDSL hydrolase family protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C2WSJ7_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 4.830e-14
Identity = 51/164 (31.10%), Postives = 75/164 (45.73%), Query Frame = 1 
Query:    1 VYIQLGGNDFLGASPAPTTELELETFWSGVWDDIQIVVDHIQSIRPNAKIIYGNYDYIMDGDASDGHLGLIKLGEEAIARAALDPNLF-------YLNTLGLAHFELGVPGQFGAGVRPAPGGFPGYVPLAGGDLTVAGDANAWADTIHYNATMYLNLAELAVD 471
            V++ L GNDFL       ++ E +  ++ +  D++ VV H  S+RP+ ++    YDYI   + S G   L +L E  +  A +  +L        Y+ + G  H   G P +  AG  P PG  P + P  GGD        A  D IH +A  Y  L  L VD
Sbjct:  111 VHLSLTGNDFLREWTIEMSDAERDALFTRIVRDLETVVRHCLSVRPDVRVAIVGYDYI---NKSKGRASLQQLNEAGMILAGMKRDLAARLNRCEYIQSYGAMHHYFGFPPKIPAGRLPLPGQAPDFQPWPGGDRKKGNPPEAMFDDIHLSAKGYYYLGRLCVD 271
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115330.3189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C2WSJ7_9BACT4.830e-1431.10SGNH/GDSL hydrolase family protein n=1 Tax=Candida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115330contigM-pyrifera_M_contig115330:3..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.4700878-CDS-M-pyrifera_M_contig115330:2..5331622815669.4700878-CDS-M-pyrifera_M_contig115330:2..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115330 3..533 +
1692277513.5697184-CDS-M-pyrifera_M_contig115330:2..5331692277513.5697184-CDS-M-pyrifera_M_contig115330:2..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115330 3..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115330.3189.1prot_M-pyrifera_M_contig115330.3189.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115330 3..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115330.3189.1

>prot_M-pyrifera_M_contig115330.3189.1 ID=prot_M-pyrifera_M_contig115330.3189.1|Name=mRNA_M-pyrifera_M_contig115330.3189.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
VYIQLGGNDFLGASPAPTTELELETFWSGVWDDIQIVVDHIQSIRPNAKI
IYGNYDYIMDGDASDGHLGLIKLGEEAIARAALDPNLFYLNTLGLAHFEL
GVPGQFGAGVRPAPGGFPGYVPLAGGDLTVAGDANAWADTIHYNATMYLN
LAELAVDQFIAGFLGGPSTIKITGLPA
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mRNA from alignment at M-pyrifera_M_contig115330:3..533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115330.3189.1 ID=mRNA_M-pyrifera_M_contig115330.3189.1|Name=mRNA_M-pyrifera_M_contig115330.3189.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig115330:3..533+ (Macrocystis pyrifera P11B4 male)
GTGTATATCCAGTTAGGGGGCAACGATTTCTTGGGTGCAAGCCCTGCGCC
CACGACGGAATTGGAATTGGAGACGTTTTGGTCCGGTGTCTGGGATGACA
TTCAAATCGTAGTCGACCACATTCAATCGATTCGCCCGAATGCCAAAATA
ATCTACGGCAACTACGACTACATTATGGACGGTGATGCGTCCGATGGTCA
TTTAGGACTCATCAAACTCGGTGAGGAAGCCATTGCGCGTGCCGCGTTGG
ACCCCAATCTCTTCTATTTGAACACCTTAGGTCTTGCGCACTTTGAGTTG
GGGGTTCCCGGCCAATTTGGCGCTGGTGTGCGACCGGCACCCGGCGGATT
CCCGGGCTATGTACCCCTGGCGGGTGGTGACTTGACGGTCGCTGGTGATG
CCAACGCTTGGGCCGATACGATTCATTACAACGCAACGATGTACCTGAAC
TTGGCGGAACTGGCCGTCGATCAGTTTATCGCGGGATTTCTTGGTGGCCC
ATCGACCATTAAAATTACGGGGTTGCCCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115330:3..533+

>mRNA_M-pyrifera_M_contig115330.3189.1 ID=mRNA_M-pyrifera_M_contig115330.3189.1|Name=mRNA_M-pyrifera_M_contig115330.3189.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig115330:3..533+ (Macrocystis pyrifera P11B4 male)
GTGTATATCCAGTTAGGGGGCAACGATTTCTTGGGTGCAAGCCCTGCGCC
CACGACGGAATTGGAATTGGAGACGTTTTGGTCCGGTGTCTGGGATGACA
TTCAAATCGTAGTCGACCACATTCAATCGATTCGCCCGAATGCCAAAATA
ATCTACGGCAACTACGACTACATTATGGACGGTGATGCGTCCGATGGTCA
TTTAGGACTCATCAAACTCGGTGAGGAAGCCATTGCGCGTGCCGCGTTGG
ACCCCAATCTCTTCTATTTGAACACCTTAGGTCTTGCGCACTTTGAGTTG
GGGGTTCCCGGCCAATTTGGCGCTGGTGTGCGACCGGCACCCGGCGGATT
CCCGGGCTATGTACCCCTGGCGGGTGGTGACTTGACGGTCGCTGGTGATG
CCAACGCTTGGGCCGATACGATTCATTACAACGCAACGATGTACCTGAAC
TTGGCGGAACTGGCCGTCGATCAGTTTATCGCGGGATTTCTTGGTGGCCC
ATCGACCATTAAAATTACGGGGTTGCCCGCGGTGTATATCCAGTTAGGGG
GCAACGATTTCTTGGGTGCAAGCCCTGCGCCCACGACGGAATTGGAATTG
GAGACGTTTTGGTCCGGTGTCTGGGATGACATTCAAATCGTAGTCGACCA
CATTCAATCGATTCGCCCGAATGCCAAAATAATCTACGGCAACTACGACT
ACATTATGGACGGTGATGCGTCCGATGGTCATTTAGGACTCATCAAACTC
GGTGAGGAAGCCATTGCGCGTGCCGCGTTGGACCCCAATCTCTTCTATTT
GAACACCTTAGGTCTTGCGCACTTTGAGTTGGGGGTTCCCGGCCAATTTG
GCGCTGGTGTGCGACCGGCACCCGGCGGATTCCCGGGCTATGTACCCCTG
GCGGGTGGTGACTTGACGGTCGCTGGTGATGCCAACGCTTGGGCCGATAC
GATTCATTACAACGCAACGATGTACCTGAACTTGGCGGAACTGGCCGTCG
ATCAGTTTATCGCGGGATTTCTTGGTGGCCCATCGACCATTAAAATTACG
GGGTTGCCCGCG
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