mRNA_M-pyrifera_M_contig115324.3188.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115324.3188.1
Unique NamemRNA_M-pyrifera_M_contig115324.3188.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115324.3188.1 vs. uniprot
Match: A0A517WJB2_9PLAN (Uncharacterized protein n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WJB2_9PLAN)

HSP 1 Score: 369 bits (947), Expect = 1.970e-120
Identity = 185/188 (98.40%), Postives = 188/188 (100.00%), Query Frame = 1
Query:    1 PPPDLAKMINAITLFDYKVADEFVAVHEVQYDPESSEKTMFFNFINHNEKAAQFRPERVRAKVETELADLPRYIPGSLQMDFDKGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNSLPPQGKNQAHPKGIGVVAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTNIVRSARSALDG 564
            PPPDLAKMINAITLFDYKVADEFVAVHEVQYDP+SSEKTMFFNFINHNEKAAQFRPERVRAKVETELADLPRYIPGSLQMDF+KGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNSLPPQGKNQAHPKGIG+VAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTNIVRSARSALDG
Sbjct:  605 PPPDLAKMINAITLFDYKVADEFVAVHEVQYDPKSSEKTMFFNFINHNEKAAQFRPERVRAKVETELADLPRYIPGSLQMDFEKGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNSLPPQGKNQAHPKGIGIVAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTNIVRSARSALDG 792          
BLAST of mRNA_M-pyrifera_M_contig115324.3188.1 vs. uniprot
Match: A0A518AD48_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AD48_9PLAN)

HSP 1 Score: 196 bits (499), Expect = 3.200e-55
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 1
Query:    1 PPPDLAKMINAITLFDYKVADEFVAVHEVQYDPESSEKTMFFNFINHNEKAAQFRPERVRAKVETELA-DLPRYIPGSLQMDFDKGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNSLPPQGKNQAHPKGIGVVAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTNIVRSARSALDG 564
            PP DLA M+N++  F++KVADE VAVH+VQYDPESSEKT++F F N NE   +   E +R K +  LA  L RYIP SLQMDFD+GT ++ +RIG +++ E   +  SL    +  +Y+ + PPQGK  AHP+GIG+VAG+ A    GSS     G+ A+GKHLKVTIQYGLYAGK N+ RSAR+ALDG
Sbjct:  604 PPADLANMVNSLFFFNFKVADEIVAVHDVQYDPESSEKTLYFQFANRNEFGPRNDREYIRDKTDGVLAYRLDRYIPNSLQMDFDQGTFNINIRIGGNEQSEIRTITESLGNNKIDATYVKTDPPQGKGNAHPRGIGIVAGAGAGMVTGSS-----GKQAEGKHLKVTIQYGLYAGKQNVARSARTALDG 787          
BLAST of mRNA_M-pyrifera_M_contig115324.3188.1 vs. uniprot
Match: A0A6I6AHL2_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AHL2_9PLAN)

HSP 1 Score: 193 bits (491), Expect = 4.190e-54
Identity = 102/189 (53.97%), Postives = 133/189 (70.37%), Query Frame = 1
Query:    1 PPPDLAKMINAITLFDYKVADEFVAVHEVQYDPESSEKTMFFNFINHNEKAAQFRPERVRAKVETELAD-LPRYIPGSLQMDFDKGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNSLPPQGKNQAHPKGIGVVAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTNIVRSARSALDG 564
            PP DL+KM+N++  F ++VADE VAVH+VQYDPESSEK+M F F+NHN        + +R K E  L   L RY+P SLQMDFD+GT  ++MRIG +++ E   ++    +  + ++Y+ ++PPQGK +AHP GIG+V  S A    GSS     G+LA GK+LKVTIQYGLYAGK NIVRSARSALDG
Sbjct:  603 PPADLSKMVNSLFFFHFRVADEIVAVHDVQYDPESSEKSMSFRFVNHNAIGPHIDRDYIRGKTEGVLRYMLHRYVPNSLQMDFDQGTFDIKMRIGGNEQSEIQTILEWQGKNKIDMTYVKTVPPQGKGKAHPLGIGMVTESGAXXAVGSS-----GKLATGKYLKVTIQYGLYAGKLNIVRSARSALDG 786          
BLAST of mRNA_M-pyrifera_M_contig115324.3188.1 vs. uniprot
Match: A6C9F4_9PLAN (Manganese transport regulator MntR n=4 Tax=Planctomycetaceae TaxID=126 RepID=A6C9F4_9PLAN)

HSP 1 Score: 130 bits (326), Expect = 1.390e-31
Identity = 76/190 (40.00%), Postives = 112/190 (58.95%), Query Frame = 1
Query:    1 PPPDLAKMINAITLFDYKVADEFVAVHEVQYDPESSEKTMFFNFINHNEKAAQFRPERVRAKVETELADLPRYIPGSLQMDFDKGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNSLPPQGKNQAHPKGIGVVAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTN--IVRSARSALDG 564
            PP DL KM+N I   D  V  E V+V +V YDPE+SEKTM+F+FIN  +K  QF     +   +  L  +  YIPGSLQMDFD+GT ++R+R+  DD  +      +L R+ L+ ++LN+  P+     +P+  G+ A  +A+         PA  L K ++++VT++YGLY G+      +SAR ALDG
Sbjct:  500 PPDDLIKMVNGIRSLDLDVDQELVSVEDVVYDPEASEKTMYFSFINQGQKLHQFDKTFTQHMADGNLGAIGGYIPGSLQMDFDEGTFNIRVRVVEDDARDIETATTALARIKLECTHLNTTLPESSGNGNPQQPGMTAKQSAE---------PA--LVK-ENVRVTVKYGLYGGRATGKPEKSARDALDG 677          
BLAST of mRNA_M-pyrifera_M_contig115324.3188.1 vs. uniprot
Match: A0A517RN50_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RN50_9PLAN)

HSP 1 Score: 124 bits (310), Expect = 2.100e-29
Identity = 70/188 (37.23%), Postives = 106/188 (56.38%), Query Frame = 1
Query:    1 PPPDLAKMINAITLFDYKVADEFVAVHEVQYDPESSEKTMFFNFINHNEKAAQFRPERVRAKVETELADLPRYIPGSLQMDFDKGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNSLPPQGKNQAHPKGIGVVAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTNIVRSARSALDG 564
            PP D  K I++I     +V D+ V++ +V YDPE SEKTM F+F+N+ ++ AQF     +   E  L  L  YI  SLQMDF +GT  +R+R G ++  E   V + L  + +  ++LN++PP+          G+V+ S           QP   +A  ++LKVTIQ+GLY+G+  + +SAR  LDG
Sbjct:  562 PPGDFLKQIHSIGFLKLEVDDKIVSIEDVDYDPEVSEKTMIFSFVNNGQRLAQFDEINQQRSAENNLHGLSNYISRSLQMDFQQGTFKIRLRAGRNEAAEIQAVTNGLNAIKISCTHLNTIPPKPGGPTGKSIPGMVSNSN----------QPT-PIASDQNLKVTIQFGLYSGRGKMAKSARDVLDG 738          
BLAST of mRNA_M-pyrifera_M_contig115324.3188.1 vs. uniprot
Match: A0A3D3RDG6_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RDG6_9PLAN)

HSP 1 Score: 123 bits (309), Expect = 2.740e-29
Identity = 78/191 (40.84%), Postives = 113/191 (59.16%), Query Frame = 1
Query:    1 PPPDLAKMINAITLFDYKVADEFVAVHEVQYDPESSEKTMFFNFINHNEKAAQFRPERVRAKVETELADLPRYIPGSLQMDFDKGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNS-LPPQGKNQAHPKGIGVVAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTN--IVRSARSALDG 564
            PP DL KM+N I   D  V  E V+V +V YDPE+SEKTM+F+F+N  +K  QF     +   +  L  +  YIPGSLQMDFD+GT ++R+R+  DD  +  + I++L R+NL+ ++  + LP  G N   P   G+ A  + +         PA  L K +++KVT++YGLY G+       SAR+ALDG
Sbjct:  500 PPDDLIKMVNGIRSLDLDVDQELVSVEDVVYDPEASEKTMYFSFVNQGQKLHQFDKIFKQHVADGNLGAIGGYIPGSLQMDFDQGTFNIRVRVVEDDARDIESAINALARINLECTHQQTKLPESGGNPLQP---GMTAKQSTE---------PA--LIK-ENVKVTVKYGLYGGRATGKPQSSARNALDG 675          
BLAST of mRNA_M-pyrifera_M_contig115324.3188.1 vs. uniprot
Match: A0A517VL72_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VL72_9PLAN)

HSP 1 Score: 123 bits (308), Expect = 3.740e-29
Identity = 70/190 (36.84%), Postives = 111/190 (58.42%), Query Frame = 1
Query:    1 PPPDLAKMINAITLFDYKVADEFVAVHEVQYDPESSEKTMFFNFINHNEKAAQFRPERVRAKVETELADLPRYIPGSLQMDFDKGTLSVRMRIGLDDRWEKNNVIHSLTRLNLQLSYLNSLPPQGKNQAHPKGIGVVAGSAADKGQGSSMLQPAGQLAKGKHLKVTIQYGLYAGKTN--IVRSARSALDG 564
            PP DL KM+N I   D  V  E V+V + +YDP++SEKTM+F+F+N  +K  QF     +   +  L  +  YIPGSL+MD+D+GT ++R+R+  +D  +      SL R+ ++ ++L ++ P+     +P   G+ A  +A+         PA  L K +++KVT++YGLY G+      +SAR ALDG
Sbjct:  497 PPDDLTKMVNGIRFLDLDVDQELVSVEDFEYDPQASEKTMYFSFVNRGQKLPQFDKITQKHVADGNLGAIEGYIPGSLKMDYDQGTFNIRVRVVNEDASDIEAATTSLARIKIECNHLKTILPESSGTGNPLQPGMTAKQSAE---------PA--LVK-ENVKVTVKYGLYGGRATGKPQKSARDALDG 674          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115324.3188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A517WJB2_9PLAN1.970e-12098.40Uncharacterized protein n=3 Tax=Gimesia chilikensi... [more]
A0A518AD48_9PLAN3.200e-5555.03Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A6I6AHL2_9PLAN4.190e-5453.97Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A6C9F4_9PLAN1.390e-3140.00Manganese transport regulator MntR n=4 Tax=Plancto... [more]
A0A517RN50_9PLAN2.100e-2937.23Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A0A3D3RDG6_9PLAN2.740e-2940.84Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517VL72_9PLAN3.740e-2936.84Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115324contigM-pyrifera_M_contig115324:3..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size543
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.4216814-UTR-M-pyrifera_M_contig115324:2..231622815669.4216814-UTR-M-pyrifera_M_contig115324:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115324 3..23 +
1692277513.5492527-UTR-M-pyrifera_M_contig115324:2..231692277513.5492527-UTR-M-pyrifera_M_contig115324:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115324 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.434553-CDS-M-pyrifera_M_contig115324:23..5661622815669.434553-CDS-M-pyrifera_M_contig115324:23..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115324 24..566 +
1692277513.5600376-CDS-M-pyrifera_M_contig115324:23..5661692277513.5600376-CDS-M-pyrifera_M_contig115324:23..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115324 24..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115324.3188.1prot_M-pyrifera_M_contig115324.3188.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115324 24..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115324.3188.1

>prot_M-pyrifera_M_contig115324.3188.1 ID=prot_M-pyrifera_M_contig115324.3188.1|Name=mRNA_M-pyrifera_M_contig115324.3188.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
MINAITLFDYKVADEFVAVHEVQYDPESSEKTMFFNFINHNEKAAQFRPE
RVRAKVETELADLPRYIPGSLQMDFDKGTLSVRMRIGLDDRWEKNNVIHS
LTRLNLQLSYLNSLPPQGKNQAHPKGIGVVAGSAADKGQGSSMLQPAGQL
AKGKHLKVTIQYGLYAGKTNIVRSARSALDG
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mRNA from alignment at M-pyrifera_M_contig115324:3..566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115324.3188.1 ID=mRNA_M-pyrifera_M_contig115324.3188.1|Name=mRNA_M-pyrifera_M_contig115324.3188.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig115324:3..566+ (Macrocystis pyrifera P11B4 male)
CCGCCACCCGATCTCGCAAAAATGATTAATGCGATCACGCTGTTTGATTA TAAAGTTGCCGATGAATTCGTCGCCGTACATGAAGTGCAGTACGATCCGG AATCATCCGAGAAGACCATGTTCTTCAATTTTATCAATCACAATGAGAAA GCAGCTCAATTCAGACCAGAACGGGTACGTGCCAAAGTAGAAACGGAACT GGCTGATTTACCCCGATACATCCCCGGCTCGCTCCAGATGGATTTTGACA AGGGAACTCTCAGTGTCAGAATGCGAATCGGATTAGATGACAGATGGGAG AAGAATAACGTAATCCATAGTCTAACTAGATTGAATCTGCAATTGAGTTA CCTCAATTCCCTGCCTCCGCAAGGGAAAAATCAGGCTCATCCGAAAGGCA TCGGTGTTGTTGCGGGTTCAGCTGCAGACAAGGGTCAGGGTTCTTCCATG TTGCAACCTGCCGGCCAGCTGGCGAAAGGGAAACACCTGAAAGTGACGAT TCAATACGGACTGTATGCAGGTAAAACGAATATCGTCCGCAGTGCCCGGT CTGCCCTGGATGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115324:3..566+

>mRNA_M-pyrifera_M_contig115324.3188.1 ID=mRNA_M-pyrifera_M_contig115324.3188.1|Name=mRNA_M-pyrifera_M_contig115324.3188.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig115324:3..566+ (Macrocystis pyrifera P11B4 male)
ATGATTAATGCGATCACGCTGTTTGATTATAAAGTTGCCGATGAATTCGT
CGCCGTACATGAAGTGCAGTACGATCCGGAATCATCCGAGAAGACCATGT
TCTTCAATTTTATCAATCACAATGAGAAAGCAGCTCAATTCAGACCAGAA
CGGGTACGTGCCAAAGTAGAAACGGAACTGGCTGATTTACCCCGATACAT
CCCCGGCTCGCTCCAGATGGATTTTGACAAGGGAACTCTCAGTGTCAGAA
TGCGAATCGGATTAGATGACAGATGGGAGAAGAATAACGTAATCCATAGT
CTAACTAGATTGAATCTGCAATTGAGTTACCTCAATTCCCTGCCTCCGCA
AGGGAAAAATCAGGCTCATCCGAAAGGCATCGGTGTTGTTGCGGGTTCAG
CTGCAGACAAGGGTCAGGGTTCTTCCATGTTGCAACCTGCCGGCCAGCTG
GCGAAAGGGAAACACCTGAAAGTGACGATTCAATACGGACTGTATGCAGG
TAAAACGAATATCGTCCGCAGTGCCCGGTCTGCCCTGGATGGAATGATTA
ATGCGATCACGCTGTTTGATTATAAAGTTGCCGATGAATTCGTCGCCGTA
CATGAAGTGCAGTACGATCCGGAATCATCCGAGAAGACCATGTTCTTCAA
TTTTATCAATCACAATGAGAAAGCAGCTCAATTCAGACCAGAACGGGTAC
GTGCCAAAGTAGAAACGGAACTGGCTGATTTACCCCGATACATCCCCGGC
TCGCTCCAGATGGATTTTGACAAGGGAACTCTCAGTGTCAGAATGCGAAT
CGGATTAGATGACAGATGGGAGAAGAATAACGTAATCCATAGTCTAACTA
GATTGAATCTGCAATTGAGTTACCTCAATTCCCTGCCTCCGCAAGGGAAA
AATCAGGCTCATCCGAAAGGCATCGGTGTTGTTGCGGGTTCAGCTGCAGA
CAAGGGTCAGGGTTCTTCCATGTTGCAACCTGCCGGCCAGCTGGCGAAAG
GGAAACACCTGAAAGTGACGATTCAATACGGACTGTATGCAGGTAAAACG
AATATCGTCCGCAGTGCCCGGTCTGCCCTGGATGGA
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