mRNA_M-pyrifera_M_contig115311.3186.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115311.3186.1
Unique NamemRNA_M-pyrifera_M_contig115311.3186.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115311.3186.1 vs. uniprot
Match: A0A2E7KG67_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KG67_9PLAN)

HSP 1 Score: 390 bits (1001), Expect = 4.950e-135
Identity = 184/188 (97.87%), Postives = 187/188 (99.47%), Query Frame = 1 
Query:    1 WSLAFSPQGDKLLAGGRFDNVTATRVYEMTPERTLNQLTSLPAGASGAIWSPTGTQIFYLNLDESRIDLFDLQQQKVTSGCPCDFFPQGTLSLLNKNELIVAPCLIADFQPTKEPPVITQAFCPEGLPTTREFGGCDAGTVFRVSTSHRVEGPVAVSYAGGCPIEVWDYRDGDISLRYELPDLEQCWI 564
            WSLAFSPQGDKLLAGGRFDNVTATRVYEMTPERTLNQLTSLPAGASGAIWSPTGTQIFYLNLDESRIDLFDLQQQKVTSGCPCDFFPQGTLSLLNKNELIVAPCLIADFQPTKEPPVITQAFCPEG PTTREFGGCDAGTVFRVSTS+RVEGPVAVSYAGGCPIEVWDYRDGDISLRYELP+L+QCWI
Sbjct:   28 WSLAFSPQGDKLLAGGRFDNVTATRVYEMTPERTLNQLTSLPAGASGAIWSPTGTQIFYLNLDESRIDLFDLQQQKVTSGCPCDFFPQGTLSLLNKNELIVAPCLIADFQPTKEPPVITQAFCPEGQPTTREFGGCDAGTVFRVSTSYRVEGPVAVSYAGGCPIEVWDYRDGDISLRYELPNLKQCWI 215
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BLAST of mRNA_M-pyrifera_M_contig115311.3186.1 vs. uniprot
Match: A0A517WEP0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WEP0_9PLAN)

HSP 1 Score: 364 bits (935), Expect = 5.420e-125
Identity = 172/188 (91.49%), Postives = 176/188 (93.62%), Query Frame = 1 
Query:    1 WSLAFSPQGDKLLAGGRFDNVTATRVYEMTPERTLNQLTSLPAGASGAIWSPTGTQIFYLNLDESRIDLFDLQQQKVTSGCPCDFFPQGTLSLLNKNELIVAPCLIADFQPTKEPPVITQAFCPEGLPTTREFGGCDAGTVFRVSTSHRVEGPVAVSYAGGCPIEVWDYRDGDISLRYELPDLEQCWI 564
            WSLAFSPQGDKLLA GRF+NVTATRVYEMT  RTLNQLTSL AGASGA WSP GTQIFYLNL+ESRIDLFDLQQQKVTSGC CDFFPQGTLSLLN NELIVAPCLIADFQPT EPPVITQAFCPEG PTTREFGGCDAGTVFRVSTSHR EGPVAVSYAGGCP+EVWDYRDGD+SLRYE PDLEQCWI
Sbjct:   28 WSLAFSPQGDKLLAVGRFENVTATRVYEMTSGRTLNQLTSLSAGASGATWSPAGTQIFYLNLEESRIDLFDLQQQKVTSGCHCDFFPQGTLSLLNNNELIVAPCLIADFQPTAEPPVITQAFCPEGKPTTREFGGCDAGTVFRVSTSHRAEGPVAVSYAGGCPVEVWDYRDGDLSLRYEFPDLEQCWI 215
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115311.3186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7KG67_9PLAN4.950e-13597.87Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517WEP0_9PLAN5.420e-12591.49Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115311contigM-pyrifera_M_contig115311:2..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.3562574-CDS-M-pyrifera_M_contig115311:1..5651622815669.3562574-CDS-M-pyrifera_M_contig115311:1..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115311 2..565 +
1692277513.5264227-CDS-M-pyrifera_M_contig115311:1..5651692277513.5264227-CDS-M-pyrifera_M_contig115311:1..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115311 2..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115311.3186.1prot_M-pyrifera_M_contig115311.3186.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115311 2..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115311.3186.1

>prot_M-pyrifera_M_contig115311.3186.1 ID=prot_M-pyrifera_M_contig115311.3186.1|Name=mRNA_M-pyrifera_M_contig115311.3186.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
WSLAFSPQGDKLLAGGRFDNVTATRVYEMTPERTLNQLTSLPAGASGAIW
SPTGTQIFYLNLDESRIDLFDLQQQKVTSGCPCDFFPQGTLSLLNKNELI
VAPCLIADFQPTKEPPVITQAFCPEGLPTTREFGGCDAGTVFRVSTSHRV
EGPVAVSYAGGCPIEVWDYRDGDISLRYELPDLEQCWI
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mRNA from alignment at M-pyrifera_M_contig115311:2..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115311.3186.1 ID=mRNA_M-pyrifera_M_contig115311.3186.1|Name=mRNA_M-pyrifera_M_contig115311.3186.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig115311:2..565+ (Macrocystis pyrifera P11B4 male)
TGGAGTCTCGCGTTCTCTCCCCAGGGAGACAAGCTGCTGGCAGGGGGAAG
GTTTGACAATGTCACCGCCACCCGCGTTTATGAAATGACTCCTGAGCGAA
CCTTGAATCAGCTTACCTCTCTCCCGGCAGGCGCAAGCGGAGCCATCTGG
AGTCCTACCGGGACACAAATCTTCTATCTGAATCTGGATGAGTCGCGCAT
CGATCTCTTCGACCTGCAGCAGCAGAAAGTAACCTCCGGCTGTCCCTGTG
ACTTCTTCCCCCAGGGGACCCTCAGCCTGCTCAACAAAAATGAACTGATT
GTCGCACCCTGTCTGATTGCCGATTTTCAACCAACAAAAGAACCCCCGGT
CATTACGCAGGCCTTCTGTCCCGAGGGCCTGCCCACTACCCGGGAGTTTG
GCGGATGTGATGCTGGTACGGTCTTCAGGGTAAGTACTTCTCATCGGGTG
GAAGGGCCGGTTGCCGTTTCATATGCAGGTGGCTGTCCCATTGAAGTCTG
GGACTACCGGGACGGCGATATCAGTCTGCGTTATGAACTTCCCGATCTGG
AGCAGTGTTGGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115311:2..565+

>mRNA_M-pyrifera_M_contig115311.3186.1 ID=mRNA_M-pyrifera_M_contig115311.3186.1|Name=mRNA_M-pyrifera_M_contig115311.3186.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig115311:2..565+ (Macrocystis pyrifera P11B4 male)
TGGAGTCTCGCGTTCTCTCCCCAGGGAGACAAGCTGCTGGCAGGGGGAAG
GTTTGACAATGTCACCGCCACCCGCGTTTATGAAATGACTCCTGAGCGAA
CCTTGAATCAGCTTACCTCTCTCCCGGCAGGCGCAAGCGGAGCCATCTGG
AGTCCTACCGGGACACAAATCTTCTATCTGAATCTGGATGAGTCGCGCAT
CGATCTCTTCGACCTGCAGCAGCAGAAAGTAACCTCCGGCTGTCCCTGTG
ACTTCTTCCCCCAGGGGACCCTCAGCCTGCTCAACAAAAATGAACTGATT
GTCGCACCCTGTCTGATTGCCGATTTTCAACCAACAAAAGAACCCCCGGT
CATTACGCAGGCCTTCTGTCCCGAGGGCCTGCCCACTACCCGGGAGTTTG
GCGGATGTGATGCTGGTACGGTCTTCAGGGTAAGTACTTCTCATCGGGTG
GAAGGGCCGGTTGCCGTTTCATATGCAGGTGGCTGTCCCATTGAAGTCTG
GGACTACCGGGACGGCGATATCAGTCTGCGTTATGAACTTCCCGATCTGG
AGCAGTGTTGGATTTGGAGTCTCGCGTTCTCTCCCCAGGGAGACAAGCTG
CTGGCAGGGGGAAGGTTTGACAATGTCACCGCCACCCGCGTTTATGAAAT
GACTCCTGAGCGAACCTTGAATCAGCTTACCTCTCTCCCGGCAGGCGCAA
GCGGAGCCATCTGGAGTCCTACCGGGACACAAATCTTCTATCTGAATCTG
GATGAGTCGCGCATCGATCTCTTCGACCTGCAGCAGCAGAAAGTAACCTC
CGGCTGTCCCTGTGACTTCTTCCCCCAGGGGACCCTCAGCCTGCTCAACA
AAAATGAACTGATTGTCGCACCCTGTCTGATTGCCGATTTTCAACCAACA
AAAGAACCCCCGGTCATTACGCAGGCCTTCTGTCCCGAGGGCCTGCCCAC
TACCCGGGAGTTTGGCGGATGTGATGCTGGTACGGTCTTCAGGGTAAGTA
CTTCTCATCGGGTGGAAGGGCCGGTTGCCGTTTCATATGCAGGTGGCTGT
CCCATTGAAGTCTGGGACTACCGGGACGGCGATATCAGTCTGCGTTATGA
ACTTCCCGATCTGGAGCAGTGTTGGATT
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