mRNA_M-pyrifera_M_contig11529.3181.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11529.3181.1
Unique NamemRNA_M-pyrifera_M_contig11529.3181.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11529.3181.1 vs. uniprot
Match: D7FMM3_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM3_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.200e-40
Identity = 242/593 (40.81%), Postives = 287/593 (48.40%), Query Frame = 1 
Query:   22 DRVRLRGLGEEILILVVQHALPAQLTDWLKLPLELSEGDADFLLKPDECCQVRRKXXXXXXXXXXXXXXXXXXXXXXXXXEHALRARKSILVQLLIAAGPPADAIRLVRASANLSPGASGGA--SGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGRREGKMVDCCTRVVPARSSCCKPPEDATTATASIXXXXXXXXXXXXXSQRSCCPRTVPRANCHERRPRRGLPAERRETSGAVSSCRPAVAVVGCAPVSRGDTNLDLPIPVPVIDVDGAA---------APVNSDKLCLHRATMDRDLVRMRQIISNGVDRDATDLWSCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RFLSLPTVRILLASDADENAQNCEGHTPAEVTGVLPDGREIENQPDPLVAQSILALLAEAAAQRTWKRRAWLVMLRARAQVEELEALVDLGVRIAKDCCVSV---GDATVGAASADXXXXXXXXXXXXXXXXVNAVGG----------GCGGVAGVVEEESDVTDSELSNLVTQTTGLAEEGVFQKIVRFL 1725
            DR  LRG GE++L++V++ +  AQ T+WL+ P  LS      L K ++CC++R  XXXXXXXXXXXXXXXXXXXXXXXX EHA+ A K  LV+ L+AAG            A L+    GG     XX                      XXXXXXX                  A SSC   P        +                 S  P ++        RP  G P+     S    S  P  +    +P +                 D A+         A V SD LCLHRATM RD   MR++++ GVDR+A DLW CTA             XXXXXXXXXXXXXXXXXXXXXXXX             XXXX          XXXXX   RFLSLPTVRILL SDADE A+N +G TP EVTGV PDGR +ENQP P+V + I+ALL  A  +R WKRR WLVMLRARAQ +    LV+     A+  CV +    D  V A  +D           XXXXX                GCGG   V E       SE  +LV QTT L EEGVFQK+V+FL
Sbjct:   11 DRASLRGRGEDLLVIVLKRSSRAQSTEWLRFPRVLSPDAKCLLQKREQCCEIRXXXXXXXXXXXXXXXXXXXXXXXXXXLEHAVEAGKGWLVEPLLAAG------------AGLAGAVGGGGRREXXXKGAGTAAVAVPGPGKPSCSGGGXXXXXXXXXXXXXXXXXXXXXXXXXASSSCGHTPHRTPVKQQAGLDFAWACSAPSTPPSCSTGPPSI--------RPDGGEPSASSGCSRNFGSQAPPSSPRCGSPGASSSXXXXXXXXXXXXXXDHASSHSPTAAAIASVTSDPLCLHRATMARDAGLMRELLAAGVDRNAVDLWDCTALHRAAEQERSAEHXXXXXXXXXXXXXXXXXXXXXXXXAAARGAETAVVDLXXXXSCLSDRGNNGXXXXXSAVRFLSLPTVRILLDSDADEAAKNNDGQTPREVTGVHPDGRPLENQPGPVVPRKIVALLDAAVLRRKWKRRGWLVMLRARAQRQAALELVEA----ARTGCVVIVRKEDEGVAAGGSDAEARPCESGADXXXXXXXXXXXXXXXXXXDRDGCGGGVAVPERNQ----SEFYHLVGQTTLLTEEGVFQKVVQFL 575
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11529.3181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM3_ECTSI3.200e-4040.81Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11529contigM-pyrifera_M_contig11529:6143..7951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue4.7e-39
Seed eggNOG ortholog2880.D7FMM3
Preferred nameANKRD66
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0044464
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-23_000870.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1728
Cds size1728
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.1566381-CDS-M-pyrifera_M_contig11529:6142..76241622815669.1566381-CDS-M-pyrifera_M_contig11529:6142..7624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11529 6143..7624 +
1692277513.4403076-CDS-M-pyrifera_M_contig11529:6142..76241692277513.4403076-CDS-M-pyrifera_M_contig11529:6142..7624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11529 6143..7624 +
1622815669.1687803-CDS-M-pyrifera_M_contig11529:7705..79511622815669.1687803-CDS-M-pyrifera_M_contig11529:7705..7951Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11529 7706..7951 +
1692277513.4526856-CDS-M-pyrifera_M_contig11529:7705..79511692277513.4526856-CDS-M-pyrifera_M_contig11529:7705..7951Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11529 7706..7951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11529.3181.1prot_M-pyrifera_M_contig11529.3181.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11529 6143..7951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11529.3181.1

>prot_M-pyrifera_M_contig11529.3181.1 ID=prot_M-pyrifera_M_contig11529.3181.1|Name=mRNA_M-pyrifera_M_contig11529.3181.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=576bp
MERADCADRVRLRGLGEEILILVVQHALPAQLTDWLKLPLELSEGDADFL
LKPDECCQVRRKGEEILTVVMERASPKQWCKWLQIPLEHALRARKSILVQ
LLIAAGPPADAIRLVRASANLSPGASGGASGSPGTSGGAHLSPGASGGAS
GSPGASGGASGSNGGRREGKMVDCCTRVVPARSSCCKPPEDATTATASIA
ATAAPAATASAASQRSCCPRTVPRANCHERRPRRGLPAERRETSGAVSSC
RPAVAVVGCAPVSRGDTNLDLPIPVPVIDVDGAAAPVNSDKLCLHRATMD
RDLVRMRQIISNGVDRDATDLWSCTALHRAAEKDDAEPVRLLLAAGLDVR
ARDMEGYSPLHFASAKGAATAIVDLLAAGSCLSDRGLNGDTPLHSAVRFL
SLPTVRILLASDADENAQNCEGHTPAEVTGVLPDGREIENQPDPLVAQSI
LALLAEAAAQRTWKRRAWLVMLRARAQVEELEALVDLGVRIAKDCCVSVG
DATVGAASADDVSGGAVTADAVTPDAVNAVGGGCGGVAGVVEEESDVTDS
ELSNLVTQTTGLAEEGVFQKIVRFL*
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mRNA from alignment at M-pyrifera_M_contig11529:6143..7951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11529.3181.1 ID=mRNA_M-pyrifera_M_contig11529.3181.1|Name=mRNA_M-pyrifera_M_contig11529.3181.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at M-pyrifera_M_contig11529:6143..7951+ (Macrocystis pyrifera P11B4 male)
ATGGAAAGGGCTGACTGCGCCGATCGAGTCCGGCTACGCGGCCTAGGGGA
AGAAATCCTCATCCTCGTCGTGCAACACGCGCTCCCCGCCCAGCTAACAG
ACTGGCTCAAACTTCCCCTCGAGCTCTCCGAGGGGGATGCAGACTTCCTC
TTGAAGCCGGACGAGTGTTGCCAGGTGCGCCGCAAGGGAGAAGAGATCCT
GACGGTTGTCATGGAGCGCGCGTCCCCAAAGCAGTGGTGCAAGTGGCTGC
AGATCCCACTCGAGCACGCGCTGCGCGCGCGGAAATCAATCCTTGTTCAG
CTGCTCATTGCCGCAGGTCCACCCGCCGATGCAATTAGATTAGTTAGGGC
TAGCGCAAATCTCAGTCCCGGTGCCAGCGGTGGTGCTAGCGGCAGTCCCG
GTACCAGCGGTGGTGCACATCTCAGTCCCGGTGCCAGCGGTGGTGCTAGC
GGCAGTCCCGGTGCTAGCGGTGGTGCTAGCGGCAGCAACGGTGGGCGAAG
AGAGGGGAAAATGGTGGACTGCTGTACCCGCGTGGTTCCTGCAAGGTCGT
CGTGCTGCAAGCCTCCGGAGGATGCTACTACTGCGACTGCTTCTATTGCT
GCGACAGCCGCGCCTGCTGCGACTGCCAGCGCTGCTTCTCAGCGATCCTG
CTGCCCTAGGACTGTTCCTCGGGCCAATTGTCACGAACGGCGTCCGCGCC
GCGGGTTGCCCGCCGAGCGCCGTGAAACGAGTGGCGCCGTGTCTAGCTGC
CGCCCCGCGGTCGCCGTCGTTGGGTGCGCCCCCGTATCTCGCGGGGACAC
CAACCTCGACCTTCCGATTCCTGTCCCGGTTATCGACGTGGATGGCGCAG
CGGCGCCCGTAAACTCAGACAAGCTTTGCCTCCACCGGGCTACCATGGAT
CGCGATCTCGTTCGCATGCGCCAGATTATTAGTAACGGGGTCGACCGCGA
TGCGACCGACCTCTGGAGTTGCACCGCTCTGCATCGAGCGGCGGAGAAGG
ATGACGCCGAGCCGGTGCGGCTGCTGCTGGCGGCCGGTCTCGACGTCCGA
GCTCGGGACATGGAGGGCTACTCGCCGCTGCACTTTGCATCGGCCAAAGG
CGCCGCTACCGCGATCGTCGACCTCCTGGCGGCGGGGTCGTGCCTGTCGG
ACAGAGGGCTAAACGGTGACACGCCGCTCCACAGCGCTGTTCGGTTTTTG
TCTCTGCCCACCGTGCGCATCTTGCTGGCGTCAGATGCCGACGAGAACGC
TCAGAACTGCGAAGGCCACACGCCAGCGGAAGTGACGGGGGTGTTGCCGG
ACGGGCGGGAGATCGAGAACCAGCCCGATCCGCTCGTGGCGCAGAGCATC
CTGGCCCTGCTCGCGGAGGCGGCCGCTCAGCGTACCTGGAAGCGCCGGGC
GTGGCTAGTAATGCTTCGAGCGAGGGCCCAGGTGGAGGAGTTGGAAGCGC
TGGTTGACCTTGGCGTTCGAATCGCCAAAGACGTCGGCCCAACGCAACCC
GCGGACCACGCAGCGGCTGAGGACGACAATGTCGACGATACGCTGTGCTG
TGCTCCCACCAAGTGCTGCGTTAGCGTCGGTGACGCGACCGTCGGTGCTG
CAAGCGCCGATGATGTGAGTGGCGGCGCCGTGACCGCCGATGCCGTGACT
CCCGACGCCGTGAATGCCGTTGGCGGTGGCTGTGGCGGTGTTGCAGGTGT
TGTGGAGGAAGAGAGTGACGTGACGGACAGCGAGTTGTCGAATCTAGTTA
CCCAAACTACGGGGCTGGCGGAAGAAGGCGTTTTCCAGAAGATTGTGCGG
TTTTTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11529:6143..7951+

>mRNA_M-pyrifera_M_contig11529.3181.1 ID=mRNA_M-pyrifera_M_contig11529.3181.1|Name=mRNA_M-pyrifera_M_contig11529.3181.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3456bp|location=Sequence derived from alignment at M-pyrifera_M_contig11529:6143..7951+ (Macrocystis pyrifera P11B4 male)
ATGGAAAGGGCTGACTGCGCCGATCGAGTCCGGCTACGCGGCCTAGGGGA
AGAAATCCTCATCCTCGTCGTGCAACACGCGCTCCCCGCCCAGCTAACAG
ACTGGCTCAAACTTCCCCTCGAGCTCTCCGAGGGGGATGCAGACTTCCTC
TTGAAGCCGGACGAGTGTTGCCAGGTGCGCCGCAAGGGAGAAGAGATCCT
GACGGTTGTCATGGAGCGCGCGTCCCCAAAGCAGTGGTGCAAGTGGCTGC
AGATCCCACTCGAGCACGCGCTGCGCGCGCGGAAATCAATCCTTGTTCAG
CTGCTCATTGCCGCAGGTCCACCCGCCGATGCAATTAGATTAGTTAGGGC
TAGCGCAAATCTCAGTCCCGGTGCCAGCGGTGGTGCTAGCGGCAGTCCCG
GTACCAGCGGTGGTGCACATCTCAGTCCCGGTGCCAGCGGTGGTGCTAGC
GGCAGTCCCGGTGCTAGCGGTGGTGCTAGCGGCAGCAACGGTGGGCGAAG
AGAGGGGAAAATGGTGGACTGCTGTACCCGCGTGGTTCCTGCAAGGTCGT
CGTGCTGCAAGCCTCCGGAGGATGCTACTACTGCGACTGCTTCTATTGCT
GCGACAGCCGCGCCTGCTGCGACTGCCAGCGCTGCTTCTCAGCGATCCTG
CTGCCCTAGGACTGTTCCTCGGGCCAATTGTCACGAACGGCGTCCGCGCC
GCGGGTTGCCCGCCGAGCGCCGTGAAACGAGTGGCGCCGTGTCTAGCTGC
CGCCCCGCGGTCGCCGTCGTTGGGTGCGCCCCCGTATCTCGCGGGGACAC
CAACCTCGACCTTCCGATTCCTGTCCCGGTTATCGACGTGGATGGCGCAG
CGGCGCCCGTAAACTCAGACAAGCTTTGCCTCCACCGGGCTACCATGGAT
CGCGATCTCGTTCGCATGCGCCAGATTATTAGTAACGGGGTCGACCGCGA
TGCGACCGACCTCTGGAGTTGCACCGCTCTGCATCGAGCGGCGGAGAAGG
ATGACGCCGAGCCGGTGCGGCTGCTGCTGGCGGCCGGTCTCGACGTCCGA
GCTCGGGACATGGAGGGCTACTCGCCGCTGCACTTTGCATCGGCCAAAGG
CGCCGCTACCGCGATCGTCGACCTCCTGGCGGCGGGGTCGTGCCTGTCGG
ACAGAGGGCTAAACGGTGACACGCCGCTCCACAGCGCTGTTCGGTTTTTG
TCTCTGCCCACCGTGCGCATCTTGCTGGCGTCAGATGCCGACGAGAACGC
TCAGAACTGCGAAGGCCACACGCCAGCGGAAGTGACGGGGGTGTTGCCGG
ACGGGCGGGAGATCGAGAACCAGCCCGATCCGCTCGTGGCGCAGAGCATC
CTGGCCCTGCTCGCGGAGGCGGCCGCTCAGCGTACCTGGAAGCGCCGGGC
GTGGCTAGTAATGCTTCGAGCGAGGGCCCAGGTGGAGGAGTTGGAAGCGC
TGGTTGACCTTGGCGTTCGAATCGCCAAAGACATGGAAAGGGCTGACTGC
GCCGATCGAGTCCGGCTACGCGGCCTAGGGGAAGAAATCCTCATCCTCGT
CGTGCAACACGCGCTCCCCGCCCAGCTAACAGACTGGCTCAAACTTCCCC
TCGAGCTCTCCGAGGGGGATGCAGACTTCCTCTTGAAGCCGGACGAGTGT
TGCCAGGTGCGCCGCAAGGGAGAAGAGATCCTGACGGTTGTCATGGAGCG
CGCGTCCCCAAAGCAGTGGTGCAAGTGGCTGCAGATCCCACTCGAGCACG
CGCTGCGCGCGCGGAAATCAATCCTTGTTCAGCTGCTCATTGCCGCAGGT
CCACCCGCCGATGCAATTAGATTAGTTAGGGCTAGCGCAAATCTCAGTCC
CGGTGCCAGCGGTGGTGCTAGCGGCAGTCCCGGTACCAGCGGTGGTGCAC
ATCTCAGTCCCGGTGCCAGCGGTGGTGCTAGCGGCAGTCCCGGTGCTAGC
GGTGGTGCTAGCGGCAGCAACGGTGGGCGAAGAGAGGGGAAAATGGTGGA
CTGCTGTACCCGCGTGGTTCCTGCAAGGTCGTCGTGCTGCAAGCCTCCGG
AGGATGCTACTACTGCGACTGCTTCTATTGCTGCGACAGCCGCGCCTGCT
GCGACTGCCAGCGCTGCTTCTCAGCGATCCTGCTGCCCTAGGACTGTTCC
TCGGGCCAATTGTCACGAACGGCGTCCGCGCCGCGGGTTGCCCGCCGAGC
GCCGTGAAACGAGTGGCGCCGTGTCTAGCTGCCGCCCCGCGGTCGCCGTC
GTTGGGTGCGCCCCCGTATCTCGCGGGGACACCAACCTCGACCTTCCGAT
TCCTGTCCCGGTTATCGACGTGGATGGCGCAGCGGCGCCCGTAAACTCAG
ACAAGCTTTGCCTCCACCGGGCTACCATGGATCGCGATCTCGTTCGCATG
CGCCAGATTATTAGTAACGGGGTCGACCGCGATGCGACCGACCTCTGGAG
TTGCACCGCTCTGCATCGAGCGGCGGAGAAGGATGACGCCGAGCCGGTGC
GGCTGCTGCTGGCGGCCGGTCTCGACGTCCGAGCTCGGGACATGGAGGGC
TACTCGCCGCTGCACTTTGCATCGGCCAAAGGCGCCGCTACCGCGATCGT
CGACCTCCTGGCGGCGGGGTCGTGCCTGTCGGACAGAGGGCTAAACGGTG
ACACGCCGCTCCACAGCGCTGTTCGGTTTTTGTCTCTGCCCACCGTGCGC
ATCTTGCTGGCGTCAGATGCCGACGAGAACGCTCAGAACTGCGAAGGCCA
CACGCCAGCGGAAGTGACGGGGGTGTTGCCGGACGGGCGGGAGATCGAGA
ACCAGCCCGATCCGCTCGTGGCGCAGAGCATCCTGGCCCTGCTCGCGGAG
GCGGCCGCTCAGCGTACCTGGAAGCGCCGGGCGTGGCTAGTAATGCTTCG
AGCGAGGGCCCAGGTGGAGGAGTTGGAAGCGCTGGTTGACCTTGGCGTTC
GAATCGCCAAAGACTGCTGCGTTAGCGTCGGTGACGCGACCGTCGGTGCT
GCAAGCGCCGATGATGTGAGTGGCGGCGCCGTGACCGCCGATGCCGTGAC
TCCCGACGCCGTGAATGCCGTTGGCGGTGGCTGTGGCGGTGTTGCAGGTG
TTGTGGAGGAAGAGAGTGACGTGACGGACAGCGAGTTGTCGAATCTAGTT
ACCCAAACTACGGGGCTGGCGGAAGAAGGCGTTTTCCAGAAGATTGTGCG
GTTTTTGTGATGCTGCGTTAGCGTCGGTGACGCGACCGTCGGTGCTGCAA
GCGCCGATGATGTGAGTGGCGGCGCCGTGACCGCCGATGCCGTGACTCCC
GACGCCGTGAATGCCGTTGGCGGTGGCTGTGGCGGTGTTGCAGGTGTTGT
GGAGGAAGAGAGTGACGTGACGGACAGCGAGTTGTCGAATCTAGTTACCC
AAACTACGGGGCTGGCGGAAGAAGGCGTTTTCCAGAAGATTGTGCGGTTT
TTGTGA
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