mRNA_M-pyrifera_M_contig115285.3180.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115285.3180.1
Unique NamemRNA_M-pyrifera_M_contig115285.3180.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A7W2CAI7_9ACTN (Mycothiol synthase n=3 Tax=Acidimicrobiales TaxID=84993 RepID=A0A7W2CAI7_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 7.960e-8
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAW 129
            +GL +LA +G+ +GMLYVE DN PA+R YE++GFS   V+RA+
Sbjct:  187 SGLHYLANKGISLGMLYVESDNLPAIRIYEKIGFSVHSVNRAF 229
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A2D6UCM6_9ACTN (Mycothiol synthase n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UCM6_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 8.140e-8
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAW 129
            AGL+WLA +GL+ GMLYVE DN PA  TY  +GFS    DRA+
Sbjct:  187 AGLAWLAXEGLEHGMLYVESDNDPANATYAAIGFSRHHTDRAY 229
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A2D7RYA1_9ACTN (Mycothiol synthase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7RYA1_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 8.140e-8
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAW 129
            AGL+WLA+ GL+ GMLYVE DN PA  TY  +GFS    DRA+
Sbjct:  187 AGLAWLADYGLEHGMLYVESDNDPANATYAAIGFSRHHTDRAY 229
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A6N2DP40_9ACTN (Mycothiol acetyltransferase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DP40_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 8.520e-8
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAW 129
            AGL  +A +G+ IGML+V+ DNTPAVR YERLGFS  R D A+
Sbjct:  275 AGLDSIARRGVTIGMLFVDADNTPAVRLYERLGFSIHRTDVAF 317
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: UPI000935035B (mycothiol synthase n=1 Tax=Rhodococcus marinonascens TaxID=38311 RepID=UPI000935035B)

HSP 1 Score: 55.5 bits (132), Expect = 1.120e-7
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAWRRA 138
            AGL +L ++GL   +LYVE DNTPA+RTY+RLGF    VD A+ RA
Sbjct:  261 AGLHYLRDRGLGAVLLYVEGDNTPALRTYDRLGFEKFHVDMAYARA 306
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A2E9LFP0_9ACTN (Mycothiol synthase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LFP0_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 1.550e-7
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAW 129
            AGL++L   G D+GMLYVE DNTPA+R YE +GF+    +RA+
Sbjct:  186 AGLNYLMSVGADLGMLYVESDNTPAIRIYEEIGFTHFSTNRAY 228
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A2D6UXF9_9ACTN (Mycothiol synthase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UXF9_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 2.140e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAWR 132
            +GL++LA+ G D+GMLYVE DN PA+R YE +GF+    +RA+R
Sbjct:  186 SGLNYLADVGADLGMLYVEADNIPAIRIYEDIGFTHFCTNRAYR 229
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A2D7X8L1_9ACTN (N-acetyltransferase domain-containing protein n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A2D7X8L1_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 2.980e-7
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAWRRA 138
            +GL+ LA  G D+GMLYVE DN PA+R YE +GF+    +RA+R++
Sbjct:  186 SGLNXLANVGADLGMLYVEADNXPAIRIYEDIGFTHFSTNRAYRKS 231
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A2E3XMI2_9BACT (Mycothiol synthase n=1 Tax=bacterium TaxID=1869227 RepID=A0A2E3XMI2_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 4.130e-7
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAWR 132
            +GL++L+  G D+GMLYVE DN PAVR YE +GF+    +RA+R
Sbjct:  186 SGLNYLSSVGADLGMLYVEADNKPAVRIYEDIGFTHFSTNRAYR 229
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BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Match: A0A2T5L2D2_9NOCA (Mycothiol acetyltransferase n=1 Tax=Rhodococcus sp. OK519 TaxID=2135729 RepID=A0A2T5L2D2_9NOCA)

HSP 1 Score: 53.1 bits (126), Expect = 7.530e-7
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAW 129
            AGL +L ++GLD  +LYVE DNT A+RTYERLGF    VD A+
Sbjct:  259 AGLRYLRDRGLDTVLLYVEGDNTAALRTYERLGFERFHVDVAY 301
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115285.3180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W2CAI7_9ACTN7.960e-855.81Mycothiol synthase n=3 Tax=Acidimicrobiales TaxID=... [more]
A0A2D6UCM6_9ACTN8.140e-860.47Mycothiol synthase n=5 Tax=Acidimicrobiaceae bacte... [more]
A0A2D7RYA1_9ACTN8.140e-860.47Mycothiol synthase n=1 Tax=Acidimicrobiaceae bacte... [more]
A0A6N2DP40_9ACTN8.520e-862.79Mycothiol acetyltransferase n=1 Tax=Ilumatobacter ... [more]
UPI000935035B1.120e-758.70mycothiol synthase n=1 Tax=Rhodococcus marinonasce... [more]
A0A2E9LFP0_9ACTN1.550e-755.81Mycothiol synthase n=1 Tax=Acidimicrobiaceae bacte... [more]
A0A2D6UXF9_9ACTN2.140e-754.55Mycothiol synthase n=1 Tax=Acidimicrobiaceae bacte... [more]
A0A2D7X8L1_9ACTN2.980e-752.17N-acetyltransferase domain-containing protein n=3 ... [more]
A0A2E3XMI2_9BACT4.130e-754.55Mycothiol synthase n=1 Tax=bacterium TaxID=1869227... [more]
A0A2T5L2D2_9NOCA7.530e-760.47Mycothiol acetyltransferase n=1 Tax=Rhodococcus sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115285contigM-pyrifera_M_contig115285:4..150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.1214187-CDS-M-pyrifera_M_contig115285:3..1501622815669.1214187-CDS-M-pyrifera_M_contig115285:3..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115285 4..150 +
1692277513.428608-CDS-M-pyrifera_M_contig115285:3..1501692277513.428608-CDS-M-pyrifera_M_contig115285:3..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115285 4..150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115285.3180.1prot_M-pyrifera_M_contig115285.3180.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115285 4..150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115285.3180.1

>prot_M-pyrifera_M_contig115285.3180.1 ID=prot_M-pyrifera_M_contig115285.3180.1|Name=mRNA_M-pyrifera_M_contig115285.3180.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
AGLSWLAEQGLDIGMLYVECDNTPAVRTYERLGFSTVRVDRAWRRAQV*
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mRNA from alignment at M-pyrifera_M_contig115285:4..150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115285.3180.1 ID=mRNA_M-pyrifera_M_contig115285.3180.1|Name=mRNA_M-pyrifera_M_contig115285.3180.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig115285:4..150+ (Macrocystis pyrifera P11B4 male)
GCCGGACTCTCGTGGCTCGCCGAGCAGGGGCTCGACATCGGCATGCTCTA
CGTGGAGTGCGACAACACTCCGGCGGTCCGAACCTATGAGCGTCTCGGGT
TCTCGACCGTGCGTGTCGACCGAGCCTGGCGCCGCGCCCAGGTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115285:4..150+

>mRNA_M-pyrifera_M_contig115285.3180.1 ID=mRNA_M-pyrifera_M_contig115285.3180.1|Name=mRNA_M-pyrifera_M_contig115285.3180.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig115285:4..150+ (Macrocystis pyrifera P11B4 male)
GCCGGACTCTCGTGGCTCGCCGAGCAGGGGCTCGACATCGGCATGCTCTA
CGTGGAGTGCGACAACACTCCGGCGGTCCGAACCTATGAGCGTCTCGGGT
TCTCGACCGTGCGTGTCGACCGAGCCTGGCGCCGCGCCCAGGTCTGAGCC
GGACTCTCGTGGCTCGCCGAGCAGGGGCTCGACATCGGCATGCTCTACGT
GGAGTGCGACAACACTCCGGCGGTCCGAACCTATGAGCGTCTCGGGTTCT
CGACCGTGCGTGTCGACCGAGCCTGGCGCCGCGCCCAGGTCTGA
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