mRNA_M-pyrifera_M_contig115282.3179.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115282.3179.1
Unique NamemRNA_M-pyrifera_M_contig115282.3179.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: A0A495IQ27_MARNT (DNA-binding transcriptional LysR family regulator n=28 Tax=Bacteria TaxID=2 RepID=A0A495IQ27_MARNT)

HSP 1 Score: 314 bits (805), Expect = 4.140e-106
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQSAVKAIA 474
            STWLFEGGYVLAMRADHPLAGRQITMEEFL+ARHLLVTMSGDAHGFVDSYLDQKG +RRIAATVNHFSIVPQ+LR+SNLI AVPELISQDCGFVDGLWMGQLPFEVDPTSL LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMT+SPCG S VKAIA
Sbjct:  160 STWLFEGGYVLAMRADHPLAGRQITMEEFLEARHLLVTMSGDAHGFVDSYLDQKGCSRRIAATVNHFSIVPQILRESNLITAVPELISQDCGFVDGLWMGQLPFEVDPTSLYLIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTSSPCGHSTVKAIA 317
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: UPI001F281FF4 (LysR substrate-binding domain-containing protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=UPI001F281FF4)

HSP 1 Score: 289 bits (739), Expect = 1.820e-96
Identity = 134/158 (84.81%), Postives = 145/158 (91.77%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQSAVKAIA 474
            STWLFEGGY+LAMRADHPLAGR ITM+EFL ARHLLVTMSGDAHGFVDSYLDQKG +RRIA+TVNHFSIVP++LR+S+LIAAVPELISQDCGFV+GLWMG+LPF VDPTSL LIWH RHDRDPGIVWLR HVERLL+ERWHDIMT SPC     KAIA
Sbjct:  133 STWLFEGGYLLAMRADHPLAGRPITMDEFLSARHLLVTMSGDAHGFVDSYLDQKGHSRRIASTVNHFSIVPKILRESDLIAAVPELISQDCGFVNGLWMGELPFSVDPTSLYLIWHARHDRDPGIVWLRTHVERLLQERWHDIMTKSPCSHLTSKAIA 290
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: A0A495IQT5_MARNT (DNA-binding transcriptional LysR family regulator n=7 Tax=Proteobacteria TaxID=1224 RepID=A0A495IQT5_MARNT)

HSP 1 Score: 288 bits (738), Expect = 6.060e-96
Identity = 132/157 (84.08%), Postives = 146/157 (92.99%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQSAVKAI 471
            STWLFEGGYVLAMRADHPLAGRQITMEEFL+ARHLLV+MSGDAHGFVDSYLDQKG +RRIAATVNHFS VP VLR++NLIAAVPELISQDCGFV+GLWMG+LPF+VDPTSL LIWH RHDRDPG+VWLR  +E LL+ERWHDIM NSPCG+  +KA+
Sbjct:  160 STWLFEGGYVLAMRADHPLAGRQITMEEFLEARHLLVSMSGDAHGFVDSYLDQKGMSRRIAATVNHFSTVPAVLRETNLIAAVPELISQDCGFVNGLWMGELPFDVDPTSLYLIWHARHDRDPGVVWLREKMENLLQERWHDIMVNSPCGRHQLKAV 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: A0A2E9SS20_9GAMM (LysR family transcriptional regulator n=6 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E9SS20_9GAMM)

HSP 1 Score: 288 bits (736), Expect = 1.260e-95
Identity = 134/158 (84.81%), Postives = 145/158 (91.77%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQSAVKAIA 474
            STWLFEGGY+LAMRADHPLAGR ITM+EFL ARHLLVTMSGDAHGFVDSYLDQKG +RRIA+TVNHFSIVP++LR S+LIAAVPELISQDCGFV+GLWMG+LPF VDPTSL LIWH RHDRDPGIVWLR HVERLL+ERWHDIMT SPC +   KAIA
Sbjct:  160 STWLFEGGYLLAMRADHPLAGRPITMDEFLSARHLLVTMSGDAHGFVDSYLDQKGHSRRIASTVNHFSIVPKILRASDLIAAVPELISQDCGFVNGLWMGELPFSVDPTSLYLIWHARHDRDPGIVWLRTHVERLLQERWHDIMTKSPCSRLTSKAIA 317
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: W5YUI2_9GAMM (HTH-type transcriptional regulator LeuO n=8 Tax=Marinobacter TaxID=2742 RepID=W5YUI2_9GAMM)

HSP 1 Score: 286 bits (731), Expect = 6.780e-95
Identity = 131/157 (83.44%), Postives = 148/157 (94.27%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQSAVKAI 471
            STWL + G+VLAMRADHPLAGRQITMEEFL+ARHLLVTMSGDAHG VDSYLDQKGQ+RRIAAT+NHF+ VPQVLR+SNLIAAVPELISQDCGFVDGLWMG+LPF+VDPTSL LIWH RHDR+PGI+W+RNH+ERLL+ RWHDIMTNSPCG+  +KA+
Sbjct:  160 STWLLDSGFVLAMRADHPLAGRQITMEEFLEARHLLVTMSGDAHGSVDSYLDQKGQSRRIAATMNHFASVPQVLRESNLIAAVPELISQDCGFVDGLWMGELPFDVDPTSLYLIWHARHDREPGIIWIRNHIERLLQARWHDIMTNSPCGRH-LKAV 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: A0A2A5M0X4_9GAMM (LysR family transcriptional regulator n=1 Tax=Marinobacter sp. ANT_B65 TaxID=2039467 RepID=A0A2A5M0X4_9GAMM)

HSP 1 Score: 285 bits (728), Expect = 1.940e-94
Identity = 122/153 (79.74%), Postives = 148/153 (96.73%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQSA 459
            S+WLF+GGY LAMRADHPLAG+QITM+EFL+ARHLLV+MSGDAHGFVDSYLDQKG++RRIAATVNHFSIVP++LR++NLIA+VPE+ISQDCGFV+GLWMG LPF+VDPTSL L+WH RHDRDPG++W+R+H+ERLL+ERWHD+MTNSPCG+ +
Sbjct:  160 SSWLFDGGYALAMRADHPLAGKQITMDEFLEARHLLVSMSGDAHGFVDSYLDQKGKSRRIAATVNHFSIVPEILRETNLIASVPEMISQDCGFVNGLWMGDLPFDVDPTSLYLVWHARHDRDPGVIWIRDHIERLLQERWHDVMTNSPCGRQS 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: UPI000A760DBA (LysR substrate-binding domain-containing protein n=1 Tax=Marinobacter similis TaxID=1420916 RepID=UPI000A760DBA)

HSP 1 Score: 280 bits (715), Expect = 1.590e-93
Identity = 127/151 (84.11%), Postives = 140/151 (92.72%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQ 453
            STWLFEGGY LAMR DHPLAGR ITMEEFL ARHLLV+MSG+AHGFVDSYLDQKGQ+RRIA TVNHFSIVPQ+LRD+NLIAAVPELISQDCGFV+GLWMG+LPFE+DPTSL LIWH RHDRDPGI+W+R  +ERLLR+RW DIM NSPCG+
Sbjct:   86 STWLFEGGYFLAMREDHPLAGRPITMEEFLSARHLLVSMSGEAHGFVDSYLDQKGQSRRIATTVNHFSIVPQILRDTNLIAAVPELISQDCGFVNGLWMGELPFEIDPTSLYLIWHARHDRDPGIIWMRELLERLLRDRWQDIMANSPCGR 236
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: A0A094IKY3_9GAMM (Transcriptional regulator n=8 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A094IKY3_9GAMM)

HSP 1 Score: 280 bits (717), Expect = 9.060e-93
Identity = 127/157 (80.89%), Postives = 148/157 (94.27%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQSAVKAI 471
            STWLFEGGYVLAMR  HPLAG+ ITMEEFL+ARHLLV+MSGDAHGFVDSYL+QKGQ+RRIAATVNHFSI+P VLR++NLIAAVPELISQDCGFV+GLWMG+LPFEVDPTS+ L+WHTRHDRDPGI+W+R+H+ERLLR+RWH+IMT  PCG+  +KA+
Sbjct:  160 STWLFEGGYVLAMREGHPLAGKPITMEEFLEARHLLVSMSGDAHGFVDSYLNQKGQSRRIAATVNHFSIMPHVLRETNLIAAVPELISQDCGFVNGLWMGELPFEVDPTSMYLVWHTRHDRDPGIIWIRDHLERLLRDRWHEIMTTLPCGRH-LKAV 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: A0A2A4XBB4_9GAMM (LysR family transcriptional regulator n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2A4XBB4_9GAMM)

HSP 1 Score: 277 bits (708), Expect = 2.900e-91
Identity = 120/155 (77.42%), Postives = 144/155 (92.90%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPCGQSAVK 465
            STWLF+GGY LAMRADHPLAGRQITM+EF+ ARH LV+MSG+AHGFVDSYLDQKG++RRIAAT NHFS VP++L+++NLIAA+PE+ISQDCGFV+ LWMG LPF+VDPTSL LIWH RHDRDPG++W+R+H+ERLL+ERWHD+MTNSPCG+S  K
Sbjct:  160 STWLFDGGYALAMRADHPLAGRQITMDEFMDARHXLVSMSGEAHGFVDSYLDQKGKSRRIAATTNHFSGVPEILKETNLIAAIPEIISQDCGFVNDLWMGDLPFDVDPTSLYLIWHARHDRDPGVIWIRDHIERLLQERWHDVMTNSPCGRSRKK 314
[Close]
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Match: UPI00119D6696 (LysR family transcriptional regulator n=2 Tax=Marinobacter TaxID=2742 RepID=UPI00119D6696)

HSP 1 Score: 274 bits (701), Expect = 1.940e-90
Identity = 122/149 (81.88%), Postives = 140/149 (93.96%), Query Frame = 1 
Query:    1 STWLFEGGYVLAMRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*LIWHTRHDRDPGIVWLRNHVERLLRERWHDIMTNSPC 447
            STWLF+GGYVLAMR DHPLAG++ITMEEFL+ARHLLVTMSGDAHGFVDSYLDQKG +RRIA TVNHFSIVPQVLR++NLIAAVPELISQDCGFV+GLWMG+LPFEVDPTSL LIWH RHDRDPG++W++ H+ERLL++RWH+IM +  C
Sbjct:  160 STWLFQGGYVLAMREDHPLAGKKITMEEFLEARHLLVTMSGDAHGFVDSYLDQKGLSRRIATTVNHFSIVPQVLRETNLIAAVPELISQDCGFVNGLWMGELPFEVDPTSLYLIWHARHDRDPGVIWMKGHIERLLQQRWHEIMASPKC 308
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115282.3179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A495IQ27_MARNT4.140e-10693.67DNA-binding transcriptional LysR family regulator ... [more]
UPI001F281FF41.820e-9684.81LysR substrate-binding domain-containing protein n... [more]
A0A495IQT5_MARNT6.060e-9684.08DNA-binding transcriptional LysR family regulator ... [more]
A0A2E9SS20_9GAMM1.260e-9584.81LysR family transcriptional regulator n=6 Tax=Gamm... [more]
W5YUI2_9GAMM6.780e-9583.44HTH-type transcriptional regulator LeuO n=8 Tax=Ma... [more]
A0A2A5M0X4_9GAMM1.940e-9479.74LysR family transcriptional regulator n=1 Tax=Mari... [more]
UPI000A760DBA1.590e-9384.11LysR substrate-binding domain-containing protein n... [more]
A0A094IKY3_9GAMM9.060e-9380.89Transcriptional regulator n=8 Tax=Gammaproteobacte... [more]
A0A2A4XBB4_9GAMM2.900e-9177.42LysR family transcriptional regulator n=2 Tax=Gamm... [more]
UPI00119D66961.940e-9081.88LysR family transcriptional regulator n=2 Tax=Mari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115282contigM-pyrifera_M_contig115282:3..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score203.4
Seed ortholog evalue5.1e-50
Seed eggNOG ortholog225937.HP15_1665
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transcriptional regulator
EggNOG OGs1N663@1224,1S10M@1236,465SZ@72275,COG0583@1,COG0583@2
COG Functional cat.K
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size474
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115282.3179.1prot_M-pyrifera_M_contig115282.3179.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115282 39..338 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.0551133-UTR-M-pyrifera_M_contig115282:2..381622815669.0551133-UTR-M-pyrifera_M_contig115282:2..38Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115282 3..38 +
1692277513.3985841-UTR-M-pyrifera_M_contig115282:2..381692277513.3985841-UTR-M-pyrifera_M_contig115282:2..38Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115282 3..38 +
1622815669.0808847-UTR-M-pyrifera_M_contig115282:338..4761622815669.0808847-UTR-M-pyrifera_M_contig115282:338..476Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115282 339..476 +
1692277513.4175594-UTR-M-pyrifera_M_contig115282:338..4761692277513.4175594-UTR-M-pyrifera_M_contig115282:338..476Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115282 339..476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.0677571-CDS-M-pyrifera_M_contig115282:38..3381622815669.0677571-CDS-M-pyrifera_M_contig115282:38..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115282 39..338 +
1692277513.4087493-CDS-M-pyrifera_M_contig115282:38..3381692277513.4087493-CDS-M-pyrifera_M_contig115282:38..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115282 39..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115282.3179.1

>prot_M-pyrifera_M_contig115282.3179.1 ID=prot_M-pyrifera_M_contig115282.3179.1|Name=mRNA_M-pyrifera_M_contig115282.3179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MRADHPLAGRQITMEEFLQARHLLVTMSGDAHGFVDSYLDQKGQNRRIAA
TVNHFSIVPQVLRDSNLIAAVPELISQDCGFVDGLWMGQLPFEVDPTSL*
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mRNA from alignment at M-pyrifera_M_contig115282:3..476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115282.3179.1 ID=mRNA_M-pyrifera_M_contig115282.3179.1|Name=mRNA_M-pyrifera_M_contig115282.3179.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig115282:3..476+ (Macrocystis pyrifera P11B4 male)
AGTACGTGGTTGTTTGAAGGCGGGTATGTCCTGGCGATGCGAGCCGACCA
CCCGCTGGCTGGCAGGCAGATTACCATGGAGGAATTTCTCCAGGCCCGGC
ACCTGCTCGTGACTATGTCGGGGGATGCGCACGGATTCGTGGACAGCTAC
CTTGATCAAAAGGGCCAGAACCGACGCATTGCCGCGACGGTAAACCATTT
TTCGATTGTTCCCCAGGTCCTCAGGGATTCAAACCTGATCGCAGCGGTCC
CCGAGTTGATAAGTCAGGACTGTGGCTTCGTGGATGGGCTATGGATGGGG
CAGTTGCCTTTCGAAGTAGATCCAACGAGCCTGTAGCTCATCTGGCACAC
ACGCCACGACCGTGATCCCGGAATCGTGTGGTTGCGGAACCACGTGGAAC
GGCTCCTTCGCGAGCGCTGGCACGACATTATGACCAACTCGCCCTGTGGG
CAGTCTGCAGTAAAAGCCATCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115282:3..476+

>mRNA_M-pyrifera_M_contig115282.3179.1 ID=mRNA_M-pyrifera_M_contig115282.3179.1|Name=mRNA_M-pyrifera_M_contig115282.3179.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig115282:3..476+ (Macrocystis pyrifera P11B4 male)
ATGCGAGCCGACCACCCGCTGGCTGGCAGGCAGATTACCATGGAGGAATT
TCTCCAGGCCCGGCACCTGCTCGTGACTATGTCGGGGGATGCGCACGGAT
TCGTGGACAGCTACCTTGATCAAAAGGGCCAGAACCGACGCATTGCCGCG
ACGGTAAACCATTTTTCGATTGTTCCCCAGGTCCTCAGGGATTCAAACCT
GATCGCAGCGGTCCCCGAGTTGATAAGTCAGGACTGTGGCTTCGTGGATG
GGCTATGGATGGGGCAGTTGCCTTTCGAAGTAGATCCAACGAGCCTGTAG
ATGCGAGCCGACCACCCGCTGGCTGGCAGGCAGATTACCATGGAGGAATT
TCTCCAGGCCCGGCACCTGCTCGTGACTATGTCGGGGGATGCGCACGGAT
TCGTGGACAGCTACCTTGATCAAAAGGGCCAGAACCGACGCATTGCCGCG
ACGGTAAACCATTTTTCGATTGTTCCCCAGGTCCTCAGGGATTCAAACCT
GATCGCAGCGGTCCCCGAGTTGATAAGTCAGGACTGTGGCTTCGTGGATG
GGCTATGGATGGGGCAGTTGCCTTTCGAAGTAGATCCAACGAGCCTGTAG
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