mRNA_M-pyrifera_M_contig115277.3177.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115277.3177.1
Unique NamemRNA_M-pyrifera_M_contig115277.3177.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A7S4M762_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M762_9EUKA)

HSP 1 Score: 209 bits (532), Expect = 3.630e-62
Identity = 90/147 (61.22%), Postives = 114/147 (77.55%), Query Frame = 1
Query:    1 VEQVDPHIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMPDVPTSVGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            +E V+ HIGT GHGYG+GGLPVGAQ PFGM RLSPDT+   +IWI W+HTGGYYYGD+H+RMFSH H VGAG++DYGT G  P   +P  +GTGY DRYP+M  FSH++ETA+PGYY+ LL     ++ I+ ELT T + G+HR+T+
Sbjct:   15 IENVNMHIGTSGHGYGVGGLPVGAQSPFGMVRLSPDTTLTEQIWIPWQHTGGYYYGDTHVRMFSHTHCVGAGELDYGTIGTIPSSSLPRHIGTGYIDRYPFMQEFSHENETAQPGYYSVLLE----DQNIKVELTTTTNTGIHRFTF 157          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A2D5ZT04_9BACT (Sugar hydrolase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2D5ZT04_9BACT)

HSP 1 Score: 154 bits (388), Expect = 1.200e-40
Identity = 78/148 (52.70%), Postives = 102/148 (68.92%), Query Frame = 1
Query:    1 VEQVDPHIGTYGHGYGIGGLPVGAQVPFGMARLSPDTS-QGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMPDVPTSVGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            +++V+P IGT G G+GIG +P GAQVPFG+ RLSPDT+  GL I   W HTGGY+Y D+HIR FSHLH VGAG +D G  G+ P+  +   +  GY  R    +RF+H SE+A PG+Y   L    L+  I+AELTAT DVG+HRY++
Sbjct:   45 LDEVNPLIGTGGRGFGIGSVPPGAQVPFGLVRLSPDTALDGLNI--PWRHTGGYHYRDTHIRYFSHLHMVGAGTLDAGNIGVMPVTSIADEIVVGYGYR----SRFAHASESASPGWYRVTL----LDSGIDAELTATKDVGLHRYSF 182          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A6B2KYI4_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYI4_9EUKA)

HSP 1 Score: 145 bits (366), Expect = 1.130e-37
Identity = 76/148 (51.35%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 VEQVDPHIGTYGHGYGIGGLPVGAQVPFGMARLSPDT-SQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMPDVPTSVGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            +  VDP IGTYG GYGIG  P GAQ PFG AR+ PDT   G+ I  AW H GGYYYGD  I  FSH H VGAG  DYGT G+ P   VP+S        Y + + F+H SE   PG+Y+  L       ++ AELT+T+  GVHRYTW
Sbjct:    1 MALVDPFIGTYGDGYGIGENPPGAQRPFGFARVGPDTVGDGIPIPDAWRHNGGYYYGDYQILCFSHTHMVGAGAADYGTIGVLPTNHVPSSSDVL---NYGFRSTFNHSSEKVLPGFYSVFLDT----PKVRAELTSTLFSGVHRYTW 141          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A820T675_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A820T675_9BILA)

HSP 1 Score: 134 bits (337), Expect = 9.580e-37
Identity = 69/145 (47.59%), Postives = 89/145 (61.38%), Query Frame = 1
Query:   10 VDPHIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMPDVPTS-VGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            V+ HIGT G+GYG+G LP+G Q P+G  RL PDTS   +I I +EH GGY+Y D +I  F H H  GAG  DYG  G+FP+       +    A RY + + F+H+ E AEPG+Y   L  H    +I  ELTAT  VGVHRY++
Sbjct:    6 VNLHIGTGGNGYGVGNLPLGVQSPYGAFRLGPDTSNTFDIPIIFEHCGGYHYSDKYINAFLHTHMFGAGLQDYGEIGVFPIQVKDDDHLQHMIASRYNYRSTFTHERERAEPGFYQVYLDTH----KINVELTATEQVGVHRYSF 146          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A821W1A5_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821W1A5_9BILA)

HSP 1 Score: 139 bits (350), Expect = 3.510e-36
Identity = 71/145 (48.97%), Postives = 92/145 (63.45%), Query Frame = 1
Query:   10 VDPHIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMP-DVPTSVGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            V+ HIGT G+GYG+G LP+GAQ P+G  RL PDTS   +I I +EH GGY+Y D +I  FSH H  GAG  DYG  G+FP+  +    +    A+RY + + F+H+ E AEPG+Y   L  H     I  ELTAT  VGVHRY++
Sbjct:    6 VNLHIGTGGNGYGVGNLPLGAQSPYGALRLGPDTSDTFDIPIIFEHCGGYHYSDKYINAFSHTHMFGAGLQDYGEVGVFPIQVEDDDHLQHMIANRYNYRSTFTHERERAEPGFYQVYLDTH----NINVELTATEQVGVHRYSF 146          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A814N1M8_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A814N1M8_9BILA)

HSP 1 Score: 131 bits (330), Expect = 2.660e-35
Identity = 65/142 (45.77%), Postives = 86/142 (60.56%), Query Frame = 1
Query:   19 HIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMP-DVPTSVGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            +IGT G G+G G LP+G Q P+G+ RL PDTS  ++I I + H  GY+Y DSHI +FSH H  GAG +DYG  G+ P+  D    +    + R  + + F H+ E  EPGYY   L  H    +I  ELTAT  VG+HRYT+
Sbjct:   33 YIGTDGDGFGAGSLPLGVQSPYGVLRLGPDTSNTMDIPIIFNHLAGYHYSDSHINIFSHTHMFGAGVVDYGEVGIIPVQIDSIKHLQAMISKRNGYRSAFRHEREVVEPGYYQVYLDTH----KINVELTATEQVGIHRYTY 170          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A819RI94_9BILA (Hypothetical protein n=7 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A819RI94_9BILA)

HSP 1 Score: 137 bits (344), Expect = 1.060e-34
Identity = 70/145 (48.28%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   10 VDPHIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMPDVPTS-VGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            V+ HIGT G+GYG+G LP+G Q P+G  RL PDTS   +I I +EH GGY+Y D +I  FSH H  GAG  DYG  G+FP+       +    A RY + + F+H+ E AEPG+Y   L  H    +I  ELTAT  VGVHRY++
Sbjct:   23 VNLHIGTSGNGYGVGNLPLGVQSPYGAFRLGPDTSNTFDIPIIFEHCGGYHYSDKYINAFSHTHMFGAGLQDYGEIGVFPIQVKDDDHLQHMIASRYNYRSTFTHERERAEPGFYQVYLDTH----KINVELTATEQVGVHRYSF 163          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A820Y4A7_9BILA (Hypothetical protein n=3 Tax=Rotaria socialis TaxID=392032 RepID=A0A820Y4A7_9BILA)

HSP 1 Score: 135 bits (339), Expect = 5.960e-34
Identity = 70/142 (49.30%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   19 HIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMP-DVPTSVGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            +IGT G GYG G LP+GAQ P+G  R+SPDTS  L+I I +EH  GY+Y D+HI +FSH HT GAG  DYG  G+FP+  D    +    + R  + + F H+ E AEPG+Y   L  H     I  ELTAT  VGVHRY++
Sbjct:   26 YIGTGGFGYGAGSLPLGAQSPYGALRVSPDTSDTLDIPIKFEHYAGYHYSDTHINVFSHTHTFGAGLQDYGEVGIFPVQIDDDHHLQRLISSRNGYRSEFKHEHERAEPGFYQVYLDTH----NINVELTATEHVGVHRYSF 163          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A816TPS0_9BILA (Hypothetical protein n=4 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816TPS0_9BILA)

HSP 1 Score: 126 bits (317), Expect = 2.550e-33
Identity = 66/141 (46.81%), Postives = 84/141 (59.57%), Query Frame = 1
Query:   19 HIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMPDVPTSVGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            +IGT G GYG G LP+G Q P+G  RLSPDTS  L+I I +EH  GY+Y D+HI +FSH HT GAG  DYG  G+    D    +    + R  + + F H+ + AEP +Y   L  H     I  ELTAT  VGVHRY++
Sbjct:   49 YIGTGGFGYGAGSLPLGVQSPYGALRLSPDTSDTLDIPIKFEHYAGYHYSDTHINVFSHTHTFGAGLQDYGEVGIPVQIDDDHHLQRLISSRNDYRSEFKHEHKRAEPVFYQVYLDTH----NINVELTATEQVGVHRYSF 185          
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Match: A0A816RLR8_9BILA (Hypothetical protein n=2 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816RLR8_9BILA)

HSP 1 Score: 126 bits (317), Expect = 4.520e-33
Identity = 66/141 (46.81%), Postives = 84/141 (59.57%), Query Frame = 1
Query:   19 HIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHTGGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMPDVPTSVGTGYADRYPWMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTW 441
            +IGT G GYG G LP+G Q P+G  RLSPDTS  L+I I +EH  GY+Y D+HI +FSH HT GAG  DYG  G+    D    +    + R  + + F H+ + AEP +Y   L  H     I  ELTAT  VGVHRY++
Sbjct:   26 YIGTGGFGYGAGSLPLGVQSPYGALRLSPDTSDTLDIPIKFEHYAGYHYSDTHINVFSHTHTFGAGLQDYGEVGIPVQIDDDHHLQRLISSRNDYRSEFKHEHKRAEPVFYQVYLDTH----NINVELTATEQVGVHRYSF 162          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115277.3177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4M762_9EUKA3.630e-6261.22Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A2D5ZT04_9BACT1.200e-4052.70Sugar hydrolase n=1 Tax=Gemmatimonadetes bacterium... [more]
A0A6B2KYI4_9EUKA1.130e-3751.35Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A820T675_9BILA9.580e-3747.59Hypothetical protein (Fragment) n=1 Tax=Rotaria ma... [more]
A0A821W1A5_9BILA3.510e-3648.97Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
A0A814N1M8_9BILA2.660e-3545.77Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A819RI94_9BILA1.060e-3448.28Hypothetical protein n=7 Tax=Rotaria magnacalcarat... [more]
A0A820Y4A7_9BILA5.960e-3449.30Hypothetical protein n=3 Tax=Rotaria socialis TaxI... [more]
A0A816TPS0_9BILA2.550e-3346.81Hypothetical protein n=4 Tax=Rotaria magnacalcarat... [more]
A0A816RLR8_9BILA4.520e-3346.81Hypothetical protein n=2 Tax=Rotaria magnacalcarat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115277contigM-pyrifera_M_contig115277:1..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score122.1
Seed ortholog evalue2.2e-25
Seed eggNOG ortholog81824.XP_001749832.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl hydrolase family 92
EggNOG OGs2QU8M@2759,38EQM@33154,COG3537@1
COG Functional cat.G
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.9672425-CDS-M-pyrifera_M_contig115277:0..4441622815668.9672425-CDS-M-pyrifera_M_contig115277:0..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115277 1..444 -
1692277513.3609426-CDS-M-pyrifera_M_contig115277:0..4441692277513.3609426-CDS-M-pyrifera_M_contig115277:0..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115277 1..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115277.3177.1prot_M-pyrifera_M_contig115277.3177.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115277 1..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115277.3177.1

>prot_M-pyrifera_M_contig115277.3177.1 ID=prot_M-pyrifera_M_contig115277.3177.1|Name=mRNA_M-pyrifera_M_contig115277.3177.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
VEQVDPHIGTYGHGYGIGGLPVGAQVPFGMARLSPDTSQGLEIWIAWEHT
GGYYYGDSHIRMFSHLHTVGAGDIDYGTFGLFPMPDVPTSVGTGYADRYP
WMARFSHDSETAEPGYYAALLSPHELEKQIEAELTATVDVGVHRYTWK
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mRNA from alignment at M-pyrifera_M_contig115277:1..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115277.3177.1 ID=mRNA_M-pyrifera_M_contig115277.3177.1|Name=mRNA_M-pyrifera_M_contig115277.3177.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig115277:1..444- (Macrocystis pyrifera P11B4 male)
GTGGAGCAGGTGGACCCCCACATTGGCACGTACGGACATGGCTATGGAAT CGGCGGTCTGCCCGTGGGAGCTCAGGTTCCTTTTGGCATGGCTCGCCTCT CCCCAGATACTAGCCAAGGCCTCGAGATTTGGATTGCTTGGGAGCACACG GGGGGGTACTACTACGGCGACTCGCACATTCGCATGTTCTCCCATCTCCA CACCGTTGGAGCGGGAGACATCGACTACGGTACCTTTGGTCTCTTCCCGA TGCCCGATGTGCCAACATCGGTGGGGACTGGTTACGCCGACCGCTACCCA TGGATGGCCCGCTTCAGCCACGATAGCGAGACGGCTGAGCCAGGCTACTA CGCAGCGCTGCTGTCGCCGCACGAGCTCGAGAAGCAGATTGAGGCCGAGT TGACGGCCACCGTTGATGTAGGTGTTCACCGCTACACGTGGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115277:1..444-

>mRNA_M-pyrifera_M_contig115277.3177.1 ID=mRNA_M-pyrifera_M_contig115277.3177.1|Name=mRNA_M-pyrifera_M_contig115277.3177.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig115277:1..444- (Macrocystis pyrifera P11B4 male)
GTGGAGCAGGTGGACCCCCACATTGGCACGTACGGACATGGCTATGGAAT
CGGCGGTCTGCCCGTGGGAGCTCAGGTTCCTTTTGGCATGGCTCGCCTCT
CCCCAGATACTAGCCAAGGCCTCGAGATTTGGATTGCTTGGGAGCACACG
GGGGGGTACTACTACGGCGACTCGCACATTCGCATGTTCTCCCATCTCCA
CACCGTTGGAGCGGGAGACATCGACTACGGTACCTTTGGTCTCTTCCCGA
TGCCCGATGTGCCAACATCGGTGGGGACTGGTTACGCCGACCGCTACCCA
TGGATGGCCCGCTTCAGCCACGATAGCGAGACGGCTGAGCCAGGCTACTA
CGCAGCGCTGCTGTCGCCGCACGAGCTCGAGAAGCAGATTGAGGCCGAGT
TGACGGCCACCGTTGATGTAGGTGTTCACCGCTACACGTGGAAGGTGGAG
CAGGTGGACCCCCACATTGGCACGTACGGACATGGCTATGGAATCGGCGG
TCTGCCCGTGGGAGCTCAGGTTCCTTTTGGCATGGCTCGCCTCTCCCCAG
ATACTAGCCAAGGCCTCGAGATTTGGATTGCTTGGGAGCACACGGGGGGG
TACTACTACGGCGACTCGCACATTCGCATGTTCTCCCATCTCCACACCGT
TGGAGCGGGAGACATCGACTACGGTACCTTTGGTCTCTTCCCGATGCCCG
ATGTGCCAACATCGGTGGGGACTGGTTACGCCGACCGCTACCCATGGATG
GCCCGCTTCAGCCACGATAGCGAGACGGCTGAGCCAGGCTACTACGCAGC
GCTGCTGTCGCCGCACGAGCTCGAGAAGCAGATTGAGGCCGAGTTGACGG
CCACCGTTGATGTAGGTGTTCACCGCTACACGTGGAAG
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