mRNA_M-pyrifera_M_contig115275.3176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115275.3176.1
Unique NamemRNA_M-pyrifera_M_contig115275.3176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: W7TN04_9STRA (dTMP kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN04_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.760e-37
Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = 1
Query:    1 QARAALESALSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLWP 417
            +A A+L S L+AG +LV DRYA+SGVAF+AAKD M   WCK CD GLP PDAV++LD+  +AA++RG YGEERYE   MQ RV+ NF+ + +G     WH +DA   +++V+  + ++  +T K V E+EG   G LWP
Sbjct:  185 EAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI--WHVVDAGVSLEDVSERVDKVVMATAKRV-EEEGLQLGTLWP 320          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: A0A835ZMW1_9STRA (dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMW1_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.220e-33
Identity = 67/138 (48.55%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 QARAALESALSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLW 414
            +A + +E  L+AG ++V DRYA+SGVAF+AAK  + + WCK  D GLPAPD V++LD+ V+AA ERG +GEERYE+ D QRRV+ NF A+R+  G   W  +DAA    EVA  +   A   +  V E EG+    LW
Sbjct:   91 EALSTIERRLAAGLTIVCDRYAYSGVAFSAAKPGLTVDWCKAPDKGLPAPDVVIYLDLAVEAAMERGQFGEERYEKADFQRRVRDNFMALREADG-ERWAVVDAAASRDEVAAAVHAAAAKAIADVKE-EGRQIQKLW 226          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: A0A7S2H363_9STRA (dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H363_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.910e-32
Identity = 62/138 (44.93%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 QARAALESALSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLW 414
            +ARA +E  L AGT++V DRYA+SGVAF+ AK+ + + WC   D GLP PD V++LD+ V+ A +RGA+GEERYE+ + QRRV  NF+A+        WH +DA + + E+  ++L IA++T +      GK    LW
Sbjct:  131 EARAKIEDTLRAGTTIVCDRYAYSGVAFSGAKEGLSVEWCMAPDRGLPCPDCVIYLDLSVEDAMQRGAFGEERYEKEEFQRRVSDNFKAIMASDST-PWHVVDATKSIAEMQAEILAIAEATQRQC---RGKPITGLW 264          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: A0A4Y7Q901_9AGAM (dTMP kinase n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7Q901_9AGAM)

HSP 1 Score: 120 bits (302), Expect = 2.220e-31
Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 QARAALESALSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDG---GGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLW 414
            +A +++ES L+AGT+++ DRYAFSGVAF+AAK  +PL WC++ D  LPAPD  LFLD+  D A  RG YGEERYE+ ++QRRV+  F  + D     G G W  +DA RD+  V+  +      T+   ++Q+  S G LW
Sbjct:   79 EAVSSIESTLAAGTTIICDRYAFSGVAFSAAKG-LPLAWCRSPDVSLPAPDLTLFLDISPDIAKSRGGYGEERYEKEELQRRVRNIFHQLGDELPKDGAGRWAVIDAGRDLNTVSESLWHEVAITIHDCTKQD--SVGKLW 216          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: A0A1Z5K5E1_FISSO (dTMP kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5E1_FISSO)

HSP 1 Score: 121 bits (303), Expect = 2.300e-31
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 1
Query:   28 LSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAV 378
            L AGTS+V DRYA+SGVAF+A+KD M L WC+  D GLPAPD V+FLDM  + A ERG YG+ERYE+ +MQ+RV+  F+ +       +W  ++AA+ M +V  D+  IAQ T++ V
Sbjct:   93 LKAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQQRVRQRFQELSQLDDGVQWKFVNAAQTMDQVEDDIWSIAQQTLEQV 209          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: A0A8H6SNQ6_9AGAR (dTMP kinase n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6SNQ6_9AGAR)

HSP 1 Score: 119 bits (299), Expect = 6.770e-31
Identity = 66/140 (47.14%), Postives = 87/140 (62.14%), Query Frame = 1
Query:   16 LESALSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLWPELTDGK 435
            +ES L  GT++V DRYAFSGVAF+AAK  +PL WC+  D+GLPAPD  +F D+  +AA  RG YGEERYE+  +QRRV+  F  +        W T+DA R  +EVAG++ + A + V  VS Q  K    LW     G+
Sbjct:   80 IESLLEQGTTVVCDRYAFSGVAFSAAKG-LPLEWCRAPDSGLPAPDLTIFFDISPEAARARGGYGEERYEKEQLQRRVRELFDVLASEFDDERWVTVDAGRSKEEVAGEVWKYAAALVGKVSPQVDK----LWVPALQGR 214          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: F6SK91_CIOIN (dTMP kinase n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6SK91_CIOIN)

HSP 1 Score: 119 bits (297), Expect = 9.930e-31
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   28 LSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLW 414
            L+ G +L+VDRYA+SG AF+AAK  + L WCK+ D+GLP PD VLFL++    A+ RG YGEERYE  + Q++V  NF  ++      EW  +DA RDM EV  DML   + T++ V  Q     G LW
Sbjct:   87 LNDGVTLIVDRYAYSGAAFSAAKKGLELDWCKSPDSGLPQPDLVLFLELSTSVAATRGGYGEERYETTEFQKKVALNFHGLKTE----EWKVIDAGRDMFEVHQDMLSFVEKTMEKVKLQP---VGTLW 208          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: A0A7S2WP01_9STRA (dTMP kinase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP01_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.190e-30
Identity = 60/130 (46.15%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 QARAALESALSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANF-RAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQ 387
            +AR  +ES L +G S+V DRYAFSGVAF+AAK  + + WC + D GLPAPD V+FLD+ ++ A +RG +GEERYE+ + QR V ANF + MR       W  LDA++ ++E+  ++  I   T + V  Q
Sbjct:   20 EARQRIESILLSGKSIVCDRYAFSGVAFSAAKPGLSMQWCASSDRGLPAPDCVIFLDLSIEEAMKRGEFGEERYEKEEFQRTVYANFDKLMRVPSDAHMWRKLDASKTVEELHAEIRSIVDQTAQRVQGQ 149          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: I0YQ02_COCSC (dTMP kinase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQ02_COCSC)

HSP 1 Score: 119 bits (297), Expect = 1.530e-30
Identity = 67/140 (47.86%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    7 RAALESALSAGTSLVVDRYAFSGVAFTAAKDA--MPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLWPE 420
            R A+ +AL AG +LVVDRYA+SG AFTAAK    + L WCK  D GLPAPDAV++L M  +AA+ RG YG+ERYE+ +MQ+ V   F  + D      WHT+DAA+ +K V   +  IA+  V + S  +G    +LW E
Sbjct:   89 REAMLAALHAGHTLVVDRYAYSGAAFTAAKKVPGLDLEWCKAPDKGLPAPDAVIYLSMSPEAAALRGGYGKERYEKEEMQKEVSRQFALLADD----TWHTVDAAQSVKAVESQVQEIAEGAVASCS--KGPPLRLLWTE 222          
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Match: A0A8J9WUS5_9CHLO (Thymidylate kinase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WUS5_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 3.050e-30
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    7 RAALESALSAGTSLVVDRYAFSGVAFTAAKD--AMPLHWCKTCDAGLPAPDAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWHTLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLW 414
            R A+ +AL AG +L+VDRYA+SG AFTAAK+   + L WCK  D GLPAPDAV++L M  +AA+ RG YG ERYE+ +MQR V   F+ + D      WHT+DAA+ ++ V  ++ +IA+  V   S   G    VLW
Sbjct:   89 REAMLAALRAGRTLIVDRYAYSGAAFTAAKNLPGLDLEWCKAPDKGLPAPDAVIYLAMTPEAAALRGGYGNERYEKEEMQREVAKQFQLLADD----RWHTVDAAQTIERVEAEVRKIAEDAVACCS--GGVPLRVLW 220          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115275.3176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TN04_9STRA1.760e-3750.36dTMP kinase n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A835ZMW1_9STRA3.220e-3348.55dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2H363_9STRA6.910e-3244.93dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687... [more]
A0A4Y7Q901_9AGAM2.220e-3146.10dTMP kinase n=1 Tax=Rickenella mellea TaxID=50990 ... [more]
A0A1Z5K5E1_FISSO2.300e-3151.28dTMP kinase n=2 Tax=Fistulifera solaris TaxID=1519... [more]
A0A8H6SNQ6_9AGAR6.770e-3147.14dTMP kinase n=1 Tax=Mycena indigotica TaxID=212618... [more]
F6SK91_CIOIN9.930e-3147.29dTMP kinase n=1 Tax=Ciona intestinalis TaxID=7719 ... [more]
A0A7S2WP01_9STRA1.190e-3046.15dTMP kinase (Fragment) n=1 Tax=Rhizochromulina mar... [more]
I0YQ02_COCSC1.530e-3047.86dTMP kinase n=1 Tax=Coccomyxa subellipsoidea (stra... [more]
A0A8J9WUS5_9CHLO3.050e-3047.83Thymidylate kinase n=1 Tax=Coccomyxa sp. Obi TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115275contigM-pyrifera_M_contig115275:69..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score122.9
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog248742.XP_005645015.1
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050145,GO:0055086,GO:0061458,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Thymidylate kinase
EggNOG OGs34HWA@3041,37JUX@33090,COG0125@1,KOG3327@2759
EC2.7.4.9
COG Functional cat.F
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.9342768-CDS-M-pyrifera_M_contig115275:68..5181622815668.9342768-CDS-M-pyrifera_M_contig115275:68..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115275 69..518 +
1692277513.350566-CDS-M-pyrifera_M_contig115275:68..5181692277513.350566-CDS-M-pyrifera_M_contig115275:68..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115275 69..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115275.3176.1prot_M-pyrifera_M_contig115275.3176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115275 69..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115275.3176.1

>prot_M-pyrifera_M_contig115275.3176.1 ID=prot_M-pyrifera_M_contig115275.3176.1|Name=mRNA_M-pyrifera_M_contig115275.3176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
QARAALESALSAGTSLVVDRYAFSGVAFTAAKDAMPLHWCKTCDAGLPAP
DAVLFLDMDVDAASERGAYGEERYERVDMQRRVQANFRAMRDGGGCGEWH
TLDAARDMKEVAGDMLRIAQSTVKAVSEQEGKSTGVLWPELTDGKHTEA*
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mRNA from alignment at M-pyrifera_M_contig115275:69..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115275.3176.1 ID=mRNA_M-pyrifera_M_contig115275.3176.1|Name=mRNA_M-pyrifera_M_contig115275.3176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig115275:69..518+ (Macrocystis pyrifera P11B4 male)
CAAGCCAGAGCAGCGCTAGAATCCGCGCTCAGTGCGGGCACGTCGCTGGT GGTGGATCGCTACGCGTTCTCCGGCGTCGCCTTCACTGCCGCCAAAGACG CCATGCCGCTGCACTGGTGCAAAACGTGCGACGCTGGGCTGCCGGCACCC GACGCCGTCCTCTTCCTCGACATGGACGTGGATGCGGCGTCTGAGCGGGG CGCGTACGGCGAGGAGCGGTACGAGCGCGTGGACATGCAGCGGCGTGTGC AAGCCAACTTCAGGGCGATGCGCGACGGCGGCGGGTGCGGGGAGTGGCAC ACGCTGGACGCGGCGAGGGACATGAAGGAGGTGGCTGGCGACATGCTGCG GATCGCACAGTCGACGGTCAAGGCGGTGTCGGAACAGGAGGGCAAGAGCA CGGGGGTGCTGTGGCCGGAGCTGACGGACGGCAAGCACACCGAGGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115275:69..518+

>mRNA_M-pyrifera_M_contig115275.3176.1 ID=mRNA_M-pyrifera_M_contig115275.3176.1|Name=mRNA_M-pyrifera_M_contig115275.3176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig115275:69..518+ (Macrocystis pyrifera P11B4 male)
CAAGCCAGAGCAGCGCTAGAATCCGCGCTCAGTGCGGGCACGTCGCTGGT
GGTGGATCGCTACGCGTTCTCCGGCGTCGCCTTCACTGCCGCCAAAGACG
CCATGCCGCTGCACTGGTGCAAAACGTGCGACGCTGGGCTGCCGGCACCC
GACGCCGTCCTCTTCCTCGACATGGACGTGGATGCGGCGTCTGAGCGGGG
CGCGTACGGCGAGGAGCGGTACGAGCGCGTGGACATGCAGCGGCGTGTGC
AAGCCAACTTCAGGGCGATGCGCGACGGCGGCGGGTGCGGGGAGTGGCAC
ACGCTGGACGCGGCGAGGGACATGAAGGAGGTGGCTGGCGACATGCTGCG
GATCGCACAGTCGACGGTCAAGGCGGTGTCGGAACAGGAGGGCAAGAGCA
CGGGGGTGCTGTGGCCGGAGCTGACGGACGGCAAGCACACCGAGGCGTGA
CAAGCCAGAGCAGCGCTAGAATCCGCGCTCAGTGCGGGCACGTCGCTGGT
GGTGGATCGCTACGCGTTCTCCGGCGTCGCCTTCACTGCCGCCAAAGACG
CCATGCCGCTGCACTGGTGCAAAACGTGCGACGCTGGGCTGCCGGCACCC
GACGCCGTCCTCTTCCTCGACATGGACGTGGATGCGGCGTCTGAGCGGGG
CGCGTACGGCGAGGAGCGGTACGAGCGCGTGGACATGCAGCGGCGTGTGC
AAGCCAACTTCAGGGCGATGCGCGACGGCGGCGGGTGCGGGGAGTGGCAC
ACGCTGGACGCGGCGAGGGACATGAAGGAGGTGGCTGGCGACATGCTGCG
GATCGCACAGTCGACGGTCAAGGCGGTGTCGGAACAGGAGGGCAAGAGCA
CGGGGGTGCTGTGGCCGGAGCTGACGGACGGCAAGCACACCGAGGCGTGA
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