mRNA_M-pyrifera_M_contig115254.3169.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115254.3169.1
Unique NamemRNA_M-pyrifera_M_contig115254.3169.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: D8LCX1_ECTSI (PNP_UDP_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX1_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.390e-18
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 SDARVKDMEAAAVAWACELHGTPFFCVKVITDLVDGGGVGE 123
            +DARVKDMEAAAVAWACE HGTP FC+KV+TDLVDGGGVGE
Sbjct:  174 NDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGE 214
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: A0A6H5JA26_9PHAE (PNP_UDP_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA26_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.900e-18
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 SDARVKDMEAAAVAWACELHGTPFFCVKVITDLVDGGGVGE 123
            +DARVKDMEAAAVAWACE HGTP FC+KV+TDLVDGGGVGE
Sbjct:  256 NDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGE 296
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: A0A7S1DXE4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DXE4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.140e-11
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 SDARVKDMEAAAVAWACELHGTPFFCVKVITDLVDG 108
            +DA VKDMEAAA+AW+CELHG PF  +KV+TD+VDG
Sbjct:   46 NDASVKDMEAAAIAWSCELHGIPFVGLKVVTDIVDG 81
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: A0A835YY09_9STRA (Nucleoside phosphorylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY09_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.940e-10
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 SDARVKDMEAAAVAWACELHG-TPFFCVKVITDLVDG 108
            ++A VKDME AAVAWACE H  TPFFC+KV+TD+VDG
Sbjct:  159 NEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDG 195
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: A0A4D9D800_9STRA (PNP_UDP_1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D800_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.070e-10
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 SDARVKDMEAAAVAWACELHGTPFFCVKVITDLVDGGGVGE 123
            +DA VKDMEAAAVAWA EL+  P+F +KV+TD+VDG    E
Sbjct:   52 NDASVKDMEAAAVAWAAELYSVPYFALKVVTDIVDGAHATE 92
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: A0A7S0PTJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PTJ4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-9
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 SDARVKDMEAAAVAWACELHGTPFFCVKVITDLVDG 108
            ++A VKDMEAAA+ WACELH TP F +KV+TD+VDG
Sbjct:  176 NEASVKDMEAAAIGWACELHETPHFGIKVVTDIVDG 211
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: W7TST5_9STRA (Nucleoside phosphorylase domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TST5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.850e-9
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 SDARVKDMEAAAVAWACELHGTPFFCVKVITDLVDGGGVGE 123
            +DA VKDMEAAAVAWA EL+  P+F +KV+TD+VDG    E
Sbjct:  197 NDASVKDMEAAAVAWAAELYSVPYFALKVVTDIVDGAHATE 237
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: A0A2P6VBC2_9CHLO (Ribosome production factor 1 isoform B n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBC2_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 6.530e-8
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    4 DARVKDMEAAAVAWACELHGTPFFCVKVITDLVDG 108
            +A VK+MEAAAVAWA +L G P FC+K ITD+VDG
Sbjct: 1188 EAAVKEMEAAAVAWAADLFGCPMFCIKSITDIVDG 1222
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: A0A250X3R8_9CHLO (PNP_UDP_1 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3R8_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 8.950e-8
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    7 ARVKDMEAAAVAWACELHGTPFFCVKVITDLVDGG 111
            A VK+MEAAA+AW C L+  P  CVK ITD+VDGG
Sbjct:  177 AAVKEMEAAAIAWVCNLYSKPLICVKSITDIVDGG 211
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BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Match: E1ZMX0_CHLVA (PNP_UDP_1 domain-containing protein (Fragment) n=2 Tax=Chlorella TaxID=3071 RepID=E1ZMX0_CHLVA)

HSP 1 Score: 54.3 bits (129), Expect = 2.180e-7
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    4 DARVKDMEAAAVAWACELHGTPFFCVKVITDLVDG 108
            +A VK+MEAAAVAW+ +L G P FC+K +TD+VDG
Sbjct:  162 EAAVKEMEAAAVAWSADLFGCPVFCIKSVTDIVDG 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115254.3169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LCX1_ECTSI2.390e-1887.80PNP_UDP_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JA26_9PHAE6.900e-1887.80PNP_UDP_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1DXE4_9STRA3.140e-1172.22Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A835YY09_9STRA2.940e-1072.97Nucleoside phosphorylase domain-containing protein... [more]
A0A4D9D800_9STRA4.070e-1063.41PNP_UDP_1 domain-containing protein n=1 Tax=Nannoc... [more]
A0A7S0PTJ4_9STRA1.160e-969.44Hypothetical protein (Fragment) n=1 Tax=Asterionel... [more]
W7TST5_9STRA2.850e-963.41Nucleoside phosphorylase domain protein n=1 Tax=Na... [more]
A0A2P6VBC2_9CHLO6.530e-868.57Ribosome production factor 1 isoform B n=2 Tax=Mic... [more]
A0A250X3R8_9CHLO8.950e-865.71PNP_UDP_1 domain-containing protein n=1 Tax=Chlamy... [more]
E1ZMX0_CHLVA2.180e-762.86PNP_UDP_1 domain-containing protein (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115254contigM-pyrifera_M_contig115254:230..376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.3e-11
Seed eggNOG ortholog2880.D8LCX1
KEGG rclassRC00063,RC00318
KEGG koko:K01244
KEGG ReactionR01401
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008477,GO:0008652,GO:0008930,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009888,GO:0009987,GO:0010087,GO:0016020,GO:0016053,GO:0016787,GO:0016798,GO:0016799,GO:0017144,GO:0019509,GO:0019752,GO:0032502,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048856,GO:0071265,GO:0071267,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.methylthioadenosine nucleosidase activity
EggNOG OGs28MG5@1,2QTZK@2759
EC3.2.2.16
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size147
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.5310113-CDS-M-pyrifera_M_contig115254:229..3551622815668.5310113-CDS-M-pyrifera_M_contig115254:229..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115254 230..355 -
1692277513.15381-CDS-M-pyrifera_M_contig115254:229..3551692277513.15381-CDS-M-pyrifera_M_contig115254:229..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115254 230..355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.544836-UTR-M-pyrifera_M_contig115254:355..3761622815668.544836-UTR-M-pyrifera_M_contig115254:355..376Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115254 356..376 -
1692277513.1723142-UTR-M-pyrifera_M_contig115254:355..3761692277513.1723142-UTR-M-pyrifera_M_contig115254:355..376Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115254 356..376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115254.3169.1prot_M-pyrifera_M_contig115254.3169.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115254 230..355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115254.3169.1

>prot_M-pyrifera_M_contig115254.3169.1 ID=prot_M-pyrifera_M_contig115254.3169.1|Name=mRNA_M-pyrifera_M_contig115254.3169.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MEAAAVAWACELHGTPFFCVKVITDLVDGGGVGEVSPPHPY*
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mRNA from alignment at M-pyrifera_M_contig115254:230..376-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115254.3169.1 ID=mRNA_M-pyrifera_M_contig115254.3169.1|Name=mRNA_M-pyrifera_M_contig115254.3169.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig115254:230..376- (Macrocystis pyrifera P11B4 male)
TCAGACGCCAGAGTTAAGGACATGGAGGCGGCGGCAGTCGCGTGGGCTTG
CGAGCTGCACGGGACCCCGTTCTTCTGCGTGAAGGTGATCACGGATCTCG
TAGATGGTGGAGGCGTCGGCGAGGTGAGCCCTCCCCACCCCTATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115254:230..376-

>mRNA_M-pyrifera_M_contig115254.3169.1 ID=mRNA_M-pyrifera_M_contig115254.3169.1|Name=mRNA_M-pyrifera_M_contig115254.3169.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig115254:230..376- (Macrocystis pyrifera P11B4 male)
ATGGAGGCGGCGGCAGTCGCGTGGGCTTGCGAGCTGCACGGGACCCCGTT
CTTCTGCGTGAAGGTGATCACGGATCTCGTAGATGGTGGAGGCGTCGGCG
AGGTGAGCCCTCCCCACCCCTATTAAATGGAGGCGGCGGCAGTCGCGTGG
GCTTGCGAGCTGCACGGGACCCCGTTCTTCTGCGTGAAGGTGATCACGGA
TCTCGTAGATGGTGGAGGCGTCGGCGAGGTGAGCCCTCCCCACCCCTATT
AA
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