mRNA_M-pyrifera_M_contig115199.3164.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115199.3164.1
Unique NamemRNA_M-pyrifera_M_contig115199.3164.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A2D8LRF0_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LRF0_9ACTN)

HSP 1 Score: 269 bits (687), Expect = 2.720e-90
Identity = 135/147 (91.84%), Postives = 142/147 (96.60%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRRWDLIPNLVETVKGYASHE+ETLE+VIAARNAATTATGPQ+ A +ENMLTGALRQLFAVSEAYPDLKANQNFLELQEELT TEGRIA+ARQHYND VLKYNTAI+TFPAV+LAGPLRFTEREYFEADDESRGNV VEF
Sbjct:   37 AQIDVQLKRRWDLIPNLVETVKGYASHEKETLESVIAARNAATTATGPQQSAGAENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTGTEGRIAYARQHYNDQVLKYNTAIETFPAVILAGPLRFTEREYFEADDESRGNVQVEF 183          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A3M2GNH8_ACTSX (LemA family protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GNH8_ACTSX)

HSP 1 Score: 239 bits (610), Expect = 1.460e-78
Identity = 122/147 (82.99%), Postives = 130/147 (88.44%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRRWDLIPNLVETVKGYASHE ETLE VIAARNAA  A GP   A SENMLTGALRQLFA+SEAYPDLKANQNFLELQEELT+TEGRIA+ARQ+YND+VL+YN  IQTFP V++AGP  FT REYFEADDESRG V VEF
Sbjct:   37 AQIDVQLKRRWDLIPNLVETVKGYASHESETLERVIAARNAAVAAEGPAATARSENMLTGALRQLFALSEAYPDLKANQNFLELQEELTATEGRIAYARQYYNDTVLRYNNKIQTFPGVLIAGPFGFTPREYFEADDESRGTVRVEF 183          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: UPI001AA0376E (LemA family protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0376E)

HSP 1 Score: 230 bits (586), Expect = 6.580e-75
Identity = 116/147 (78.91%), Postives = 129/147 (87.76%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRR+DLIPNLVETVKGYA+HERETLE V  ARN A  A GP +QA +EN+LTGAL+ LFAVSEAYPDLKANQNFL LQEELT TEGRIA+ARQ+YND V KYNT IQTFPA+++AGP RFTERE+FEADDESRG V+V F
Sbjct:   37 AQIDVQLKRRYDLIPNLVETVKGYAAHERETLEKVTQARNMAVAAEGPHQQAEAENVLTGALKSLFAVSEAYPDLKANQNFLALQEELTGTEGRIAYARQYYNDQVYKYNTKIQTFPALLIAGPFRFTEREFFEADDESRGPVSVSF 183          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A6G0AAG5_9ACTN (LemA family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0AAG5_9ACTN)

HSP 1 Score: 226 bits (577), Expect = 1.540e-73
Identity = 116/147 (78.91%), Postives = 129/147 (87.76%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRR+DLIPNLVETVKGYASHE+ETLE VI ARN    A GPQEQA +ENM+TGAL+ LFA+ EAYPDLKANQ+FLELQEELT+TEGRIA+ARQ YND+V KYNT IQTFPAV++AG  RFT REYFEADDESRG V V+F
Sbjct:   37 AQIDVQLKRRYDLIPNLVETVKGYASHEKETLENVIQARNMGMQAQGPQEQAQAENMITGALKSLFALQEAYPDLKANQSFLELQEELTATEGRIAYARQFYNDTVYKYNTKIQTFPAVMVAGIFRFTGREYFEADDESRGPVQVQF 183          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A7Y2DCH0_9ACTN (LemA family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DCH0_9ACTN)

HSP 1 Score: 226 bits (575), Expect = 3.110e-73
Identity = 118/147 (80.27%), Postives = 126/147 (85.71%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRR+DLIPNLVETVKGYA+HE ETLEAVI ARN A +A+GP EQA SENMLTGAL+ LFAVSEAYPDLKANQNFLELQEELT TEGRIAFARQ YNDSVLKYNT I+ FP  V AG   FTEREYFE + +SRG V VEF
Sbjct:   37 AQIDVQLKRRYDLIPNLVETVKGYAAHESETLEAVIQARNMAQSASGPAEQAQSENMLTGALKSLFAVSEAYPDLKANQNFLELQEELTGTEGRIAFARQAYNDSVLKYNTKIEQFPGNVFAGMFNFTEREYFETEGDSRGPVTVEF 183          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A7V9GIN3_9ACTN (LemA family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GIN3_9ACTN)

HSP 1 Score: 222 bits (566), Expect = 7.790e-72
Identity = 111/147 (75.51%), Postives = 132/147 (89.80%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRR+DLIPNLVETVKGYASHERETL+AVI ARNA  +A+GPQEQAA+ENMLTGALRQ+FA+SEAYPDLKANQ+++ LQEEL+ TEGRIA+ARQ YND+V KYN  +Q+FPA+++A  + F EREYFEADD+SRG V V+F
Sbjct:   38 AQIDVQLKRRYDLIPNLVETVKGYASHERETLDAVITARNAGQSASGPQEQAAAENMLTGALRQVFALSEAYPDLKANQSYVSLQEELSGTEGRIAYARQFYNDTVFKYNAKVQSFPALLIAKRMGFGEREYFEADDDSRGPVQVKF 184          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A6J4IBC3_9ACTN (LemA protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4IBC3_9ACTN)

HSP 1 Score: 216 bits (550), Expect = 1.980e-69
Identity = 109/147 (74.15%), Postives = 129/147 (87.76%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRR+DLIPNLVETVKGYA HE+ETL+AVI ARNAA +A+GP +QA +E M+T ALRQ+FA+SEAYPDLKANQ+FL+LQEEL+ TEGRI++ARQ YND+VL+YNT IQTFPAV +A  + F EREYFEADD SRG V+V F
Sbjct:   37 AQIDVQLKRRYDLIPNLVETVKGYAGHEKETLDAVIRARNAAGSASGPADQAQAEGMVTSALRQVFALSEAYPDLKANQSFLQLQEELSGTEGRISYARQFYNDTVLRYNTKIQTFPAVFIANAMSFKEREYFEADDASRGPVDVTF 183          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A6J7N5V7_9ZZZZ (Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A6J7N5V7_9ZZZZ)

HSP 1 Score: 214 bits (545), Expect = 1.110e-68
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRR+DLIPNL+ETVKGYA+HERETLEAVIAARN A  A GP EQAA++NMLTG L+ LFA+SEAYPDLKANQNFL LQEELT TEGRIA+ARQ+YND V + NT IQTFP  + AG   F  +EYFEA+ ESRGNV V+F
Sbjct:   36 AQIDVQLKRRYDLIPNLLETVKGYAAHERETLEAVIAARNMAMAAQGPGEQAAADNMLTGTLKSLFALSEAYPDLKANQNFLALQEELTGTEGRIAYARQYYNDIVQRLNTKIQTFPPSIFAGIFGFKAKEYFEAEPESRGNVKVQF 182          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A7V8WYE4_9ACTN (LemA family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8WYE4_9ACTN)

HSP 1 Score: 214 bits (544), Expect = 2.650e-68
Identity = 108/147 (73.47%), Postives = 126/147 (85.71%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQIDVQLKRR+DLIPNLVETVK YA+HE  TLEAVI ARN A TA GP +QA +ENM+TGAL+ +FA+SEAYPDLKANQNF +LQEEL+ TEGRIA+ARQ YND+V KYNT IQ+FPAV++A  + F EREYFEADD+SRG V V+F
Sbjct:   51 AQIDVQLKRRYDLIPNLVETVKAYAAHESGTLEAVIQARNMAMTAQGPHDQAEAENMITGALKSVFALSEAYPDLKANQNFSQLQEELSGTEGRIAYARQFYNDTVYKYNTKIQSFPAVIIAKRMGFAEREYFEADDDSRGPVTVDF 197          
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Match: A0A6J4NPF2_9ACTN (LemA protein n=1 Tax=uncultured Nocardioidaceae bacterium TaxID=253824 RepID=A0A6J4NPF2_9ACTN)

HSP 1 Score: 209 bits (533), Expect = 7.660e-67
Identity = 106/147 (72.11%), Postives = 125/147 (85.03%), Query Frame = 1
Query:    1 AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQEQAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQHYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF 441
            AQ+DVQLKRR DLIPNLVETVKGYA HE+ETL+AVI AR+AA  A+GP EQA +E ++T ALRQ+FA+SEAYPDLKANQ FL+LQEEL+ TE RI++ARQ YND+V +YNT IQTFP VV+A  +RF EREYFEADD SRG V+V F
Sbjct:   37 AQVDVQLKRRHDLIPNLVETVKGYAGHEKETLDAVIRARSAAGAASGPAEQAQAEGVVTSALRQVFALSEAYPDLKANQGFLQLQEELSGTESRISYARQFYNDTVQRYNTKIQTFPTVVIANAMRFEEREYFEADDASRGPVDVRF 183          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115199.3164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LRF0_9ACTN2.720e-9091.84Uncharacterized protein n=5 Tax=Acidimicrobiaceae ... [more]
A0A3M2GNH8_ACTSX1.460e-7882.99LemA family protein n=1 Tax=Actinomyces sp. TaxID=... [more]
UPI001AA0376E6.580e-7578.91LemA family protein n=1 Tax=Rhabdothermincola sedi... [more]
A0A6G0AAG5_9ACTN1.540e-7378.91LemA family protein n=2 Tax=Bacteria TaxID=2 RepID... [more]
A0A7Y2DCH0_9ACTN3.110e-7380.27LemA family protein n=1 Tax=Acidimicrobiales bacte... [more]
A0A7V9GIN3_9ACTN7.790e-7275.51LemA family protein n=1 Tax=Acidimicrobiia bacteri... [more]
A0A6J4IBC3_9ACTN1.980e-6974.15LemA protein n=1 Tax=uncultured Acidimicrobiales b... [more]
A0A6J7N5V7_9ZZZZ1.110e-6874.83Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A... [more]
A0A7V8WYE4_9ACTN2.650e-6873.47LemA family protein n=1 Tax=Acidimicrobiia bacteri... [more]
A0A6J4NPF2_9ACTN7.660e-6772.11LemA protein n=1 Tax=uncultured Nocardioidaceae ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115199contigM-pyrifera_M_contig115199:124..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score198.0
Seed ortholog evalue3.1e-48
Seed eggNOG ortholog1313172.YM304_19790
Preferred namelemA
KEGG koko:K03744
Hectar predicted targeting categoryother localisation
EggNOG free text desc.LemA family
EggNOG OGs2GPS4@201174,COG1704@1,COG1704@2
COG Functional cat.J
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.2405224-CDS-M-pyrifera_M_contig115199:123..5671622815668.2405224-CDS-M-pyrifera_M_contig115199:123..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115199 124..567 -
1692277513.0029964-CDS-M-pyrifera_M_contig115199:123..5671692277513.0029964-CDS-M-pyrifera_M_contig115199:123..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115199 124..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115199.3164.1prot_M-pyrifera_M_contig115199.3164.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115199 124..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115199.3164.1

>prot_M-pyrifera_M_contig115199.3164.1 ID=prot_M-pyrifera_M_contig115199.3164.1|Name=mRNA_M-pyrifera_M_contig115199.3164.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
AQIDVQLKRRWDLIPNLVETVKGYASHERETLEAVIAARNAATTATGPQE
QAASENMLTGALRQLFAVSEAYPDLKANQNFLELQEELTSTEGRIAFARQ
HYNDSVLKYNTAIQTFPAVVLAGPLRFTEREYFEADDESRGNVNVEF*
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mRNA from alignment at M-pyrifera_M_contig115199:124..567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115199.3164.1 ID=mRNA_M-pyrifera_M_contig115199.3164.1|Name=mRNA_M-pyrifera_M_contig115199.3164.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig115199:124..567- (Macrocystis pyrifera P11B4 male)
GCCCAGATCGACGTCCAGCTCAAGCGTCGGTGGGATCTCATCCCCAATCT CGTCGAGACCGTGAAGGGCTACGCCTCCCACGAGCGCGAGACCCTCGAGG CCGTCATCGCGGCTCGCAACGCGGCCACCACCGCCACCGGCCCGCAAGAA CAGGCCGCCAGCGAAAACATGCTCACCGGTGCCCTGCGCCAGCTCTTCGC CGTGAGCGAGGCCTATCCCGACCTCAAGGCCAACCAGAACTTCCTCGAAC TCCAAGAAGAGCTGACCTCGACCGAGGGCCGCATCGCCTTCGCCCGCCAG CACTACAACGACAGCGTGCTGAAGTACAACACTGCGATCCAGACCTTCCC CGCCGTCGTGCTCGCCGGCCCGCTGCGCTTCACCGAGCGCGAATACTTCG AGGCCGACGACGAGTCGCGCGGCAACGTCAACGTCGAGTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115199:124..567-

>mRNA_M-pyrifera_M_contig115199.3164.1 ID=mRNA_M-pyrifera_M_contig115199.3164.1|Name=mRNA_M-pyrifera_M_contig115199.3164.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig115199:124..567- (Macrocystis pyrifera P11B4 male)
GCCCAGATCGACGTCCAGCTCAAGCGTCGGTGGGATCTCATCCCCAATCT
CGTCGAGACCGTGAAGGGCTACGCCTCCCACGAGCGCGAGACCCTCGAGG
CCGTCATCGCGGCTCGCAACGCGGCCACCACCGCCACCGGCCCGCAAGAA
CAGGCCGCCAGCGAAAACATGCTCACCGGTGCCCTGCGCCAGCTCTTCGC
CGTGAGCGAGGCCTATCCCGACCTCAAGGCCAACCAGAACTTCCTCGAAC
TCCAAGAAGAGCTGACCTCGACCGAGGGCCGCATCGCCTTCGCCCGCCAG
CACTACAACGACAGCGTGCTGAAGTACAACACTGCGATCCAGACCTTCCC
CGCCGTCGTGCTCGCCGGCCCGCTGCGCTTCACCGAGCGCGAATACTTCG
AGGCCGACGACGAGTCGCGCGGCAACGTCAACGTCGAGTTCTGAGCCCAG
ATCGACGTCCAGCTCAAGCGTCGGTGGGATCTCATCCCCAATCTCGTCGA
GACCGTGAAGGGCTACGCCTCCCACGAGCGCGAGACCCTCGAGGCCGTCA
TCGCGGCTCGCAACGCGGCCACCACCGCCACCGGCCCGCAAGAACAGGCC
GCCAGCGAAAACATGCTCACCGGTGCCCTGCGCCAGCTCTTCGCCGTGAG
CGAGGCCTATCCCGACCTCAAGGCCAACCAGAACTTCCTCGAACTCCAAG
AAGAGCTGACCTCGACCGAGGGCCGCATCGCCTTCGCCCGCCAGCACTAC
AACGACAGCGTGCTGAAGTACAACACTGCGATCCAGACCTTCCCCGCCGT
CGTGCTCGCCGGCCCGCTGCGCTTCACCGAGCGCGAATACTTCGAGGCCG
ACGACGAGTCGCGCGGCAACGTCAACGTCGAGTTCTGA
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