mRNA_M-pyrifera_M_contig11518.3161.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11518.3161.1
Unique NamemRNA_M-pyrifera_M_contig11518.3161.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: A0A6H5JHB6_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB6_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 5.760e-55
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKVEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GWLR EAGVHRLVRNSPYDP GRRHTSF+QVR+FPEA   SG AAKVEIPAK+LK+DTMRAQGAGGQHVNTTDSAVR+THLPTGLVALSQSDRSQHKNR
Sbjct:  279 GWLRSEAGVHRLVRNSPYDPNGRRHTSFSQVRVFPEAGGESGDAAKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNR 377
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: A0A8K1CGR1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGR1_PYTOL)

HSP 1 Score: 149 bits (375), Expect = 3.100e-41
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAK--VEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW + EAGVHRLVR SP+D  GRRHTSFAQVR++P A    GG  K  +EIP K+L+IDT R+ GAGGQHVNTTDSAVRITHLPTG+V   QSDRSQH+N+
Sbjct:  225 GWAKTEAGVHRLVRISPFDSAGRRHTSFAQVRVYPMAAMAGGGQGKHAIEIPTKDLRIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQSDRSQHRNK 325
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: A0A662WW55_9STRA (RF_PROK_I domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW55_9STRA)

HSP 1 Score: 146 bits (368), Expect = 8.030e-40
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKVEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW + EAGVHRLVR SP+D  GRRHTSFAQVR++P A    G    VE+PAK+L++DT R+ G GGQHVN+TDSA+RITHLP+G+V  SQSDRSQH+N+
Sbjct:  265 GWAKSEAGVHRLVRVSPFDSAGRRHTSFAQVRVYPMASEGGGSRQDVELPAKDLRVDTFRSSGPGGQHVNSTDSAIRITHLPSGIVVQSQSDRSQHRNK 363
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: A0A140ECK2_9STRA (Mitochondrial peptide chain release factor 2 n=1 Tax=Vischeria sp. CAUP Q 202 TaxID=1805947 RepID=A0A140ECK2_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.160e-39
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKVEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW R EAGVHRLVR SP+D   +RHTSFAQVR+FPE+ S S  A  VEIPAK+L+IDT R+QGAGGQ VNTTDSAVR+ HLPTGLVA  Q++RSQH+N+
Sbjct:  277 GWFRTEAGVHRLVRMSPFDANKKRHTSFAQVRVFPESTSSSSSA--VEIPAKDLRIDTYRSQGAGGQSVNTTDSAVRVVHLPTGLVATCQNERSQHRNK 373
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: A0A421GPH8_9STRA (RF_PROK_I domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GPH8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.300e-39
Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKVEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW + EAGVHRLVR SP+D  GRRHTSFAQVR++P A    G   ++EI  K+L+IDT R+ G GGQHVNTTDSA+RITHLPTG+V  SQSDRSQH+N+
Sbjct:  165 GWTKSEAGVHRLVRISPFDTAGRRHTSFAQVRVYPMAPE-GGSKQEIEISTKDLRIDTFRSSGPGGQHVNTTDSAIRITHLPTGIVVQSQSDRSQHRNK 262
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: H3GA21_PHYRM (RF_PROK_I domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA21_PHYRM)

HSP 1 Score: 142 bits (357), Expect = 9.820e-39
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKVEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW + EAGVHRLVR SP+D  GRRHTSFAQVR++P A S      ++EIP K+L+IDT R+ G GGQHVN+TDSA+RITHLPTG+V  SQSDRSQH+N+
Sbjct:  204 GWAKSEAGVHRLVRISPFDSAGRRHTSFAQVRVYPMA-SEGRSKEEIEIPTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLPTGIVVQSQSDRSQHRNK 301
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: A0A2D4CE05_PYTIN (Peptide chain release factor 2 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE05_PYTIN)

HSP 1 Score: 142 bits (358), Expect = 9.880e-39
Identity = 68/100 (68.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKV-EIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW + EAGVHRLVR SP+D  GRRHTSFAQVR++P A       + V EIP K+L+IDT R+ GAGGQHVNTTDSAVRITHLPTG+V   QSDRSQH+N+
Sbjct:  219 GWAKTEAGVHRLVRLSPFDSAGRRHTSFAQVRVYPVAALAGASNSAVHEIPVKDLRIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQSDRSQHRNK 318
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: K3WM13_GLOUD (RF_PROK_I domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM13_GLOUD)

HSP 1 Score: 140 bits (354), Expect = 1.380e-38
Identity = 65/100 (65.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAK-VEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW++ EAGVHRLVR SP+D   RRHTSFAQVR++P A   + G+   ++I  K+L+IDT R+ GAGGQHVNTTDSA+RITHLPTG+V  SQSDRSQH+N+
Sbjct:  165 GWVKTEAGVHRLVRVSPFDSAARRHTSFAQVRVYPMAAMANSGSKHLIDIAMKDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVQSQSDRSQHRNK 264
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: A0A2P4XMB8_9STRA (Peptide chain release factor n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMB8_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.650e-38
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKVEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW + EAGVHRLVR SP+D  GRRHTSFAQVR++P A         +EI  K+L+IDT R+ G GGQHVN+TDSA+RITHLPTG+V  SQSDRSQH+N+
Sbjct:   40 GWAKSEAGVHRLVRISPFDSAGRRHTSFAQVRVYPMATEGRSNE-DIEILTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLPTGIVVQSQSDRSQHRNK 137
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BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Match: A0A3F2RRE3_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRE3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.000e-37
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKVEIPAKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR 297
            GW++ EAGVHRLVR SP+D  GRRHTSFAQVR++P A    G   ++EI  K+L+IDT R+ G GGQHVNTTDSA+RITHLPTG+V  SQSDRSQH+N+
Sbjct:  641 GWMKSEAGVHRLVRISPFDTAGRRHTSFAQVRVYPMAPE-GGSKQEIEISTKDLRIDTFRSSGPGGQHVNTTDSAIRITHLPTGIVVQSQSDRSQHRNK 738
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11518.3161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHB6_9PHAE5.760e-5588.89RF_PROK_I domain-containing protein n=2 Tax=Ectoca... [more]
A0A8K1CGR1_PYTOL3.100e-4169.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WW55_9STRA8.030e-4065.66RF_PROK_I domain-containing protein n=2 Tax=Nothop... [more]
A0A140ECK2_9STRA1.160e-3970.71Mitochondrial peptide chain release factor 2 n=1 T... [more]
A0A421GPH8_9STRA3.300e-3966.67RF_PROK_I domain-containing protein n=2 Tax=Phytop... [more]
H3GA21_PHYRM9.820e-3966.67RF_PROK_I domain-containing protein n=1 Tax=Phytop... [more]
A0A2D4CE05_PYTIN9.880e-3968.00Peptide chain release factor 2 n=2 Tax=Pythium ins... [more]
K3WM13_GLOUD1.380e-3865.00RF_PROK_I domain-containing protein n=1 Tax=Globis... [more]
A0A2P4XMB8_9STRA4.650e-3864.65Peptide chain release factor n=1 Tax=Phytophthora ... [more]
A0A3F2RRE3_9STRA1.000e-3766.67RF_PROK_I domain-containing protein n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11518contigM-pyrifera_M_contig11518:1375..3738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue1.8e-44
Seed eggNOG ortholog2880.D8LKZ9
KEGG koko:K02836
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG0216@1,KOG2726@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons2
Model size298
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.1250854-CDS-M-pyrifera_M_contig11518:1375..15481622815668.1250854-CDS-M-pyrifera_M_contig11518:1375..1548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11518 1376..1548 -
1692277512.9420998-CDS-M-pyrifera_M_contig11518:1375..15481692277512.9420998-CDS-M-pyrifera_M_contig11518:1375..1548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11518 1376..1548 -
1622815668.1379719-CDS-M-pyrifera_M_contig11518:3614..37381622815668.1379719-CDS-M-pyrifera_M_contig11518:3614..3738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11518 3615..3738 -
1692277512.952685-CDS-M-pyrifera_M_contig11518:3614..37381692277512.952685-CDS-M-pyrifera_M_contig11518:3614..3738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11518 3615..3738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11518.3161.1prot_M-pyrifera_M_contig11518.3161.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11518 1376..3738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11518.3161.1

>prot_M-pyrifera_M_contig11518.3161.1 ID=prot_M-pyrifera_M_contig11518.3161.1|Name=mRNA_M-pyrifera_M_contig11518.3161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
GWLRREAGVHRLVRNSPYDPTGRRHTSFAQVRIFPEADSVSGGAAKVEIP
AKELKIDTMRAQGAGGQHVNTTDSAVRITHLPTGLVALSQSDRSQHKNR
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mRNA from alignment at M-pyrifera_M_contig11518:1375..3738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11518.3161.1 ID=mRNA_M-pyrifera_M_contig11518.3161.1|Name=mRNA_M-pyrifera_M_contig11518.3161.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2364bp|location=Sequence derived from alignment at M-pyrifera_M_contig11518:1375..3738- (Macrocystis pyrifera P11B4 male)
GGCTGGCTTCGGAGAGAGGCGGGGGTGCACCGATTAGTGCGGAATTCGCC
TTATGACCCGACCGGACGGCGCCACACGTCGTTTGCGCAGGTCAGAATTT
TCCCGGAAGCTGACAGCGTGTCCGGTGAGTGTGGGGTCTAACCCTTAACT
TTTTACTACCGCTGGCGCTTATCTGTTTGGGACTTCGGGCATCGCGTCGT
CCTTGTAGTGATGGCTGTGGCTGTGGCTGTGGCGGTGGTGCTCTTGGTTG
TATTCCTGAAGCATACTCCGACGCAACTCCAATCATGACGAACGCCTTCG
AATTCAATCCCGACAAAAAGCTCCGAATTGCGGCAACGGTAAATCAACTG
TGTTGCGGCCAGCGTTTGGCTGTGGTGAAACTTTTGCGGTAAAAATCTCG
CGATTTCGCTTGGTCAATTTTCAGCAACACGGTGACTTTCAACAAACGGT
GTCGGTAAAACCCGATGTTTGTACGGTAAGTGCTCGTAAGAGGATACGAT
TACATACGGTTACCGTACAGCGTGGATGATGAGATAACACCTCCCCCTGT
GACGAAGTTCCTAGGCAGTTTTCTGAACAACGTGAGCAATAAGGGGAGCA
CACACACACCGAAAATGGTGGCCTTAGAAAAATGTCGAGATGTTTCTTTC
CATGGACGCATCGCTCCGCAGTCTGGGAAATATTTGGAGGGGGTGTGTTG
TCTCATGACACGTGTGATAAGTCTTATATTATTACACGTGTGTGAGCTTA
TCACACGTGTGATAGTGATTATCACACGTGTGATGGTGCTATTCGGTAAT
AGTGCCGGTAGGCTGCAGTGTACGGGACAGGCCCGACAACGGTGCAGGTT
GACCCTGGGTAGTCGTAATCTCTCACACGATGTTGGCTTCTGAGCTATCA
TTGTCATACAGGGCGGCAAGGAGTTCCATTCCAAAGAAACAACAGTAACG
CCTCCTGAACAGTAGAGGGGAAAGGGGGATAGCATGAAGATAGTAACTGT
AAGTAAACCCAAATTAAAAAGGCAGCGGTATACCCGAAGTTGACCTTTCC
CGGAGATCTCAAGCGGTAACTTTATGTGGTGATCATTGCCGAGGAAAGCC
CTTGAACAATGTGGCAATAGGGGAAAAAATAGCAGGTGCTGGCATGTGTC
ATGTGGTACTTAAAGGGTCTCTTATAGTAGGTCAAAACCGTAAAGGAGTA
CTTGCGTCTTTAGAATTTCTTCATGTTTTCTACAGCAGCAATAGTATTTC
TGGTACAACAACGACATGTCGCGACTCCTTACCAAACACGGTATAGCTCC
AATATTACAGTAGGTCTCCGTGACATCTCCCGACCAACGTACAGCGTCTT
CGATATGGTCTCTATTACGGGGGTCCATAGTAAACAGGACCTACCGCACA
CACAAAAACCTCTATATGTTTATATTTTTACAAATAATATTTGGTCCTAT
TTACCATGGTCCCCCGTAGTACAAGATGTCGGAGCCCTTGGGTCTGCAAG
GGAGGGCAGTCACTGCTGTGTTTGCATAACGAATCGAAAATGCTCAGCAA
CAATAATTTGGTCGCATTCCGGAGCTCCTGTTTGGTGTCTACAGACTATT
GCTGTTAATAGTAAGTATCCTCTTGATGTGGCCGCGTAGGATGGGTAGGA
TGTTATGGGCGGTCGGTCGAGCAAGGGGCCCAGGCAGGTCCGTCTACTAT
AGTAGTAAGGCTCAGCGTTGCCGACGAAAATCTGAGTTTAGCAGGGTCAG
CAAGCAGCCTGAGAAACTTGCATTTTTCAAATTCGTTCGTCCACAGGTGG
CGGGGGTATGGGAAATTTATTTTTAGCAAGAGGCACTTTTCGTGGGGAAA
AAGGGCGTCGGATCGATTCGGTGCCTGACCAAAAAGTATTGGCCCGTGAA
CTTTATGCTCTCTTAAACAACCGTGAGGGAGAGATGGTTCGAGCATTAGA
ACTGGGGAGATATCGTTTTCGGTAGGGGAGTGATGAAAGGTGTATAAATT
ATACCGGAAATAGTATTGCAACTAGAAAAAAAAAAAACGGGTTCATTTTT
CGGAAGACTACAGTGCTTTTATGTTTTTGCTCCTTAACCCACTTCAGAAA
TGCGTCCTCGTTGTTGGGCACAATTGCTTGGAATTTGTGTGGGATCATGT
TTTATCGTTCTGACAGGCTCAAATGTGTGACGTCGAGCAGGAGGGGCCGC
GAAGGTTGAGATCCCCGCGAAGGAGTTGAAGATTGACACCATGCGGGCGC
AGGGTGCAGGGGGCCAGCACGTGAACACTACTGACAGCGCAGTTCGGATA
ACGCACCTACCGACGGGCCTTGTGGCGTTGAGCCAGAGCGACCGGTCCCA
GCACAAGAACAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11518:1375..3738-

>mRNA_M-pyrifera_M_contig11518.3161.1 ID=mRNA_M-pyrifera_M_contig11518.3161.1|Name=mRNA_M-pyrifera_M_contig11518.3161.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig11518:1375..3738- (Macrocystis pyrifera P11B4 male)
GGCTGGCTTCGGAGAGAGGCGGGGGTGCACCGATTAGTGCGGAATTCGCC
TTATGACCCGACCGGACGGCGCCACACGTCGTTTGCGCAGGTCAGAATTT
TCCCGGAAGCTGACAGCGTGTCCGGGCTGGCTTCGGAGAGAGGCGGGGGT
GCACCGATTAGTGCGGAATTCGCCTTATGACCCGACCGGACGGCGCCACA
CGTCGTTTGCGCAGGTCAGAATTTTCCCGGAAGCTGACAGCGTGTCCGGA
GGGGCCGCGAAGGTTGAGATCCCCGCGAAGGAGTTGAAGATTGACACCAT
GCGGGCGCAGGGTGCAGGGGGCCAGCACGTGAACACTACTGACAGCGCAG
TTCGGATAACGCACCTACCGACGGGCCTTGTGGCGTTGAGCCAGAGCGAC
CGGTCCCAGCACAAGAACAGGGAGGGGCCGCGAAGGTTGAGATCCCCGCG
AAGGAGTTGAAGATTGACACCATGCGGGCGCAGGGTGCAGGGGGCCAGCA
CGTGAACACTACTGACAGCGCAGTTCGGATAACGCACCTACCGACGGGCC
TTGTGGCGTTGAGCCAGAGCGACCGGTCCCAGCACAAGAACAGG
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