mRNA_M-pyrifera_M_contig115178.3160.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115178.3160.1
Unique NamemRNA_M-pyrifera_M_contig115178.3160.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: A0A7Y5CAS6_9BACT (FAD-binding oxidoreductase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CAS6_9BACT)

HSP 1 Score: 138 bits (347), Expect = 2.010e-36
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    7 IDRALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            +  A+  WR ALG D VD    TL+RYAR+T P+ T P CVLYP ++++VQ IVR+A+EH VV+YPISRG+NWGYGDACAPT G AIVD+SRMNRI
Sbjct:    1 MSNAIDAWRSALGPDKVDDAPATLERYARTTLPTATRPACVLYPATTEEVQAIVRIASEHRVVVYPISRGRNWGYGDACAPTDGAAIVDMSRMNRI 96          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: A0A7C8ENG4_9BACT (FAD-binding oxidoreductase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8ENG4_9BACT)

HSP 1 Score: 124 bits (311), Expect = 2.740e-31
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   16 ALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            A++ W  ALGD  V  + T LDRYAR+T   GT PCC+L+P +++ VQ  +R+A++H V +YPIS GKNWGYGDACAPT G AI+DLS MNRI
Sbjct:   10 AIRDWAQALGDHKVAVDDTALDRYARTTQDRGTRPCCILHPSATEDVQKTMRIASKHHVSVYPISCGKNWGYGDACAPTDGAAILDLSGMNRI 102          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: A0A7V2Y1R5_9BACT (FAD-binding oxidoreductase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y1R5_9BACT)

HSP 1 Score: 123 bits (309), Expect = 5.780e-31
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   16 ALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            A++ W+  LG + V A+  T DRYAR+T  +GT P CVLYP S+  VQ  +R+AA+H + +YPISRG NWGYGDACAPT G AI+DLSRMNRI
Sbjct:   25 AIRAWQAMLGAENVAADDATRDRYARTTQDTGTRPLCVLYPRSTTDVQAAMRIAAQHAIAVYPISRGCNWGYGDACAPTDGAAIMDLSRMNRI 117          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: UPI0016841AF6 (FAD-binding oxidoreductase n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI0016841AF6)

HSP 1 Score: 117 bits (293), Expect = 9.360e-29
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    4 DIDRALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            + D+AL  W+  +G+++V  +  TLDRYARST P GT+P  +L P ++ +V  IV+ AA + V +YPISRG+NWGYGDACA T G  IVDLSRMNRI
Sbjct:    2 EFDQALATWKEQIGEESVLCDRATLDRYARSTQPQGTQPRAILRPANTVEVCAIVQTAATYAVPIYPISRGRNWGYGDACAVTGGQVIVDLSRMNRI 98          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: A0A6I3XI81_9BURK (FAD-binding protein n=1 Tax=Massilia dura TaxID=321982 RepID=A0A6I3XI81_9BURK)

HSP 1 Score: 115 bits (288), Expect = 4.640e-28
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   16 ALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            AL  WR  LG+D V  ++ TLDRYA ST+   T P  +L P S+D+V  +VR A EH V LYPIS G+NWGYGDACA   G+AIVDLSRMNRI
Sbjct:    7 ALAAWRRLLGEDRVLVDAPTLDRYAASTSSWSTRPLAILRPVSTDEVAQVVRTATEHRVPLYPISAGRNWGYGDACALADGHAIVDLSRMNRI 99          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: UPI001E489621 (FAD-binding oxidoreductase n=1 Tax=Massilia sp. DM-R-R2A-13 TaxID=2899220 RepID=UPI001E489621)

HSP 1 Score: 114 bits (286), Expect = 8.720e-28
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   16 ALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            AL+ WR  LGD+ V  ++ TL RYA ST+   T P  VL P S+ +VQ++VR+AA HG  LYPIS G+NWGYGDACAP+ G  IVDL  MNRI
Sbjct:    6 ALRAWRSLLGDERVLDDAATLHRYAASTSSCSTRPLAVLRPRSTPEVQELVRIAAAHGTPLYPISTGRNWGYGDACAPSDGQVIVDLGGMNRI 98          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: UPI00068DC44A (FAD-dependent oxidoreductase n=1 Tax=Desulfonatronum thiodismutans TaxID=159290 RepID=UPI00068DC44A)

HSP 1 Score: 114 bits (285), Expect = 1.240e-27
Identity = 52/97 (53.61%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    4 DIDRALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            D D A ++W   LG      +  T+DRYARST P GT P  VLYP ++++VQ +V +A + G+ LYPISRGKNWGYGDACA T G  I+D+S MN I
Sbjct:    4 DFDTAFKEWARLLGPARARRDRETIDRYARSTLPKGTMPAGVLYPSTTEEVQAVVTIARQAGISLYPISRGKNWGYGDACAVTHGQVILDMSGMNHI 100          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: UPI0005EB03C5 (FAD-dependent oxidoreductase n=1 Tax=Desulfonatronum thioautotrophicum TaxID=617001 RepID=UPI0005EB03C5)

HSP 1 Score: 113 bits (283), Expect = 2.290e-27
Identity = 55/97 (56.70%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    4 DIDRALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            D   A  +W   LG      +  T+DRYARST P GT P  VLYP S+ +VQ IV +A + G+ LYPISRGKNWGYGDACA T G  I+DLS MNRI
Sbjct:    4 DFGLAFNEWTSLLGPARARRDEETIDRYARSTLPEGTTPKGVLYPSSTGEVQAIVTIARQAGISLYPISRGKNWGYGDACAVTHGQVILDLSGMNRI 100          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: A0A1G6ELT7_9DELT (4-cresol dehydrogenase (Hydroxylating) n=1 Tax=Desulfonatronum thiosulfatophilum TaxID=617002 RepID=A0A1G6ELT7_9DELT)

HSP 1 Score: 112 bits (279), Expect = 8.050e-27
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    4 DIDRALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            D+D+A Q W+  LG +    +   +  Y+R T P GT P  VLYP S+ +VQ IV +A   G+ LYPISRGKNWGYGDACA T+G  I+DL+ MNRI
Sbjct:    4 DVDQAFQDWQTLLGPERARRDQDVIATYSRCTLPEGTTPLGVLYPHSTQEVQKIVAIARRTGISLYPISRGKNWGYGDACAVTSGQVIMDLTGMNRI 100          
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Match: A0A7U5XWV1_9BURK (FAD-linked oxidase n=1 Tax=Massilia sp. YMA4 TaxID=1593482 RepID=A0A7U5XWV1_9BURK)

HSP 1 Score: 110 bits (275), Expect = 3.110e-26
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   16 ALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSDQVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI 294
            AL  WR ALGDD V  ++  L  YA STA   T P  VL P S+++V  IVR AA  GV LYP+S G+NWGYGDACAP+ G+A+VDLS MNRI
Sbjct:   13 ALAAWRQALGDDRVATDAAVLASYAASTAGWSTMPLAVLRPRSTEEVVAIVRTAATTGVPLYPVSTGRNWGYGDACAPSDGHAVVDLSGMNRI 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115178.3160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5CAS6_9BACT2.010e-3664.58FAD-binding oxidoreductase n=1 Tax=Candidatus Hydr... [more]
A0A7C8ENG4_9BACT2.740e-3159.14FAD-binding oxidoreductase n=1 Tax=Candidatus Hydr... [more]
A0A7V2Y1R5_9BACT5.780e-3160.22FAD-binding oxidoreductase n=1 Tax=Candidatus Hydr... [more]
UPI0016841AF69.360e-2955.67FAD-binding oxidoreductase n=1 Tax=Oscillatoria sp... [more]
A0A6I3XI81_9BURK4.640e-2860.22FAD-binding protein n=1 Tax=Massilia dura TaxID=32... [more]
UPI001E4896218.720e-2858.06FAD-binding oxidoreductase n=1 Tax=Massilia sp. DM... [more]
UPI00068DC44A1.240e-2753.61FAD-dependent oxidoreductase n=1 Tax=Desulfonatron... [more]
UPI0005EB03C52.290e-2756.70FAD-dependent oxidoreductase n=1 Tax=Desulfonatron... [more]
A0A1G6ELT7_9DELT8.050e-2752.584-cresol dehydrogenase (Hydroxylating) n=1 Tax=Des... [more]
A0A7U5XWV1_9BURK3.110e-2659.14FAD-linked oxidase n=1 Tax=Massilia sp. YMA4 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115178contigM-pyrifera_M_contig115178:274..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score106.7
Seed ortholog evalue6.3e-21
Seed eggNOG ortholog1266925.JHVX01000005_gene1886
KEGG rclassRC00769
KEGG koko:K05797
KEGG ReactionR02675,R11194
KEGG Pathwayko00623,ko01100,ko01120,map00623,map01100,map01120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FAD binding domain
EggNOG OGs1MY08@1224,2VJ02@28216,3741M@32003,COG0277@1,COG0277@2
EC1.17.99.1
COG Functional cat.C
Best tax levelNitrosomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.0936584-CDS-M-pyrifera_M_contig115178:273..5671622815668.0936584-CDS-M-pyrifera_M_contig115178:273..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115178 274..567 +
1692277512.93131-CDS-M-pyrifera_M_contig115178:273..5671692277512.93131-CDS-M-pyrifera_M_contig115178:273..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115178 274..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115178.3160.1prot_M-pyrifera_M_contig115178.3160.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115178 274..567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115178.3160.1

>prot_M-pyrifera_M_contig115178.3160.1 ID=prot_M-pyrifera_M_contig115178.3160.1|Name=mRNA_M-pyrifera_M_contig115178.3160.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
ADIDRALQQWRLALGDDAVDAESTTLDRYARSTAPSGTEPCCVLYPGSSD
QVQDIVRVAAEHGVVLYPISRGKNWGYGDACAPTAGNAIVDLSRMNRI
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mRNA from alignment at M-pyrifera_M_contig115178:274..567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115178.3160.1 ID=mRNA_M-pyrifera_M_contig115178.3160.1|Name=mRNA_M-pyrifera_M_contig115178.3160.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig115178:274..567+ (Macrocystis pyrifera P11B4 male)
GCTGATATCGATCGGGCACTTCAGCAATGGCGATTGGCGTTGGGCGACGA TGCCGTTGACGCAGAATCAACTACGCTAGATCGATACGCGCGTTCGACCG CGCCGAGCGGCACCGAACCGTGTTGCGTGTTGTATCCGGGGTCCAGCGAC CAAGTGCAAGACATCGTCCGTGTCGCTGCTGAGCATGGCGTTGTTCTGTA TCCAATATCCCGGGGCAAGAACTGGGGCTATGGTGATGCTTGCGCGCCAA CTGCAGGCAACGCAATCGTCGATCTTAGTCGTATGAACCGAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115178:274..567+

>mRNA_M-pyrifera_M_contig115178.3160.1 ID=mRNA_M-pyrifera_M_contig115178.3160.1|Name=mRNA_M-pyrifera_M_contig115178.3160.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig115178:274..567+ (Macrocystis pyrifera P11B4 male)
GCTGATATCGATCGGGCACTTCAGCAATGGCGATTGGCGTTGGGCGACGA
TGCCGTTGACGCAGAATCAACTACGCTAGATCGATACGCGCGTTCGACCG
CGCCGAGCGGCACCGAACCGTGTTGCGTGTTGTATCCGGGGTCCAGCGAC
CAAGTGCAAGACATCGTCCGTGTCGCTGCTGAGCATGGCGTTGTTCTGTA
TCCAATATCCCGGGGCAAGAACTGGGGCTATGGTGATGCTTGCGCGCCAA
CTGCAGGCAACGCAATCGTCGATCTTAGTCGTATGAACCGAATCGCTGAT
ATCGATCGGGCACTTCAGCAATGGCGATTGGCGTTGGGCGACGATGCCGT
TGACGCAGAATCAACTACGCTAGATCGATACGCGCGTTCGACCGCGCCGA
GCGGCACCGAACCGTGTTGCGTGTTGTATCCGGGGTCCAGCGACCAAGTG
CAAGACATCGTCCGTGTCGCTGCTGAGCATGGCGTTGTTCTGTATCCAAT
ATCCCGGGGCAAGAACTGGGGCTATGGTGATGCTTGCGCGCCAACTGCAG
GCAACGCAATCGTCGATCTTAGTCGTATGAACCGAATC
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