mRNA_M-pyrifera_M_contig115113.3143.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115113.3143.1
Unique NamemRNA_M-pyrifera_M_contig115113.3143.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: A0A673KY90_9TELE (Gamma-tubulin complex component n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673KY90_9TELE)

HSP 1 Score: 77.4 bits (189), Expect = 7.610e-15
Identity = 34/78 (43.59%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+ +AYCYASK LLD L++E+ L+ +LR++K ++L+D  D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:  346 RAYVEQIEKAYCYASKVLLDFLMEEKELVSRLRSIKHYFLMDKGDFFVHFMDLTEEELKKPVDDIIPPRLEALLELAL 423
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BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: UPI00064377B4 (disintegrin and metalloproteinase domain-containing protein 8 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI00064377B4)

HSP 1 Score: 76.3 bits (186), Expect = 1.970e-14
Identity = 35/78 (44.87%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+  A+ YASK LLD L+QE+ LL  LR++KR++L+D  D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:   88 RAYVEQIERAFSYASKVLLDFLLQEQELLAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVDDIAPSRLEALLELAL 165
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BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: UPI00188F752B (gamma-tubulin complex component 2 n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188F752B)

HSP 1 Score: 75.5 bits (184), Expect = 3.680e-14
Identity = 35/78 (44.87%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+ +A+ YASK LLD L+QE+ LL  LR++KR++L+D  D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:  481 RAYVEQIEKAFNYASKVLLDFLLQEQELLAHLRSIKRYFLMDQGDFFVHFMDLTEEELKKPVDDITPTRLEALLELAL 558
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BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: A0A6J1WBW5_9SAUR (Gamma-tubulin complex component n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1WBW5_9SAUR)

HSP 1 Score: 72.8 bits (177), Expect = 3.710e-14
Identity = 34/78 (43.59%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+ +AY YASK LLD L+ E+ L+  LR++K ++L+D  D+Y  F+++++ EL KP D+I   RL++LL  ++
Sbjct:   77 REYVEQIEKAYNYASKVLLDFLIDEKELVAHLRSIKHYFLMDQGDFYVHFMDLTEEELKKPVDDIIPTRLEALLELAL 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: A0A8J6AAH4_GALPY (Gamma-tubulin complex component 2 n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6AAH4_GALPY)

HSP 1 Score: 75.5 bits (184), Expect = 3.740e-14
Identity = 35/78 (44.87%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+ +A+ YASK LLD L+QE+ LL  LR++KR++L+D  D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:  490 RAYVEQIEKAFNYASKVLLDFLLQEQELLAHLRSIKRYFLMDQGDFFVHFMDLTEEELKKPVDDIAPPRLEALLELAL 567
[Close]
BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: UPI001B7EEA63 (gamma-tubulin complex component 2-like isoform X1 n=2 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EEA63)

HSP 1 Score: 75.1 bits (183), Expect = 5.020e-14
Identity = 34/78 (43.59%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+ +AY YASK LLD L++E+ L+ +LR++K ++L+DL D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:  482 RAYVEQIEKAYNYASKVLLDFLMEEKELVARLRSIKHYFLMDLGDFFVSFMDLTEEELKKPVDDIIPTRLEALLELAL 559
[Close]
BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: A0A2F0B1U8_ESCRO (Gamma-tubulin complex component (Fragment) n=1 Tax=Eschrichtius robustus TaxID=9764 RepID=A0A2F0B1U8_ESCRO)

HSP 1 Score: 73.9 bits (180), Expect = 1.270e-13
Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+ +A+ YASK LLD L++E+ L+ +LR++KR++L+D  D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:  284 RAYVEQIEKAFNYASKVLLDFLMEEKELVARLRSIKRYFLMDQGDFFVHFMDLTEEELKKPVDDITPTRLEALLELAL 361
[Close]
BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: UPI001055F357 (gamma-tubulin complex component 2 n=1 Tax=Gouania willdenowi TaxID=441366 RepID=UPI001055F357)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R+Y EQ+ +AY YASK LLD L++E+ L+ +LR++K ++L+D  D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:  478 RIYVEQIEKAYNYASKVLLDFLMEEKELVSRLRSIKHYFLMDKGDFFVHFMDLTEEELKKPVDDIVPPRLEALLELAL 555
[Close]
BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: G3TML2_LOXAF (Gamma-tubulin complex component n=3 Tax=Afrotheria TaxID=311790 RepID=G3TML2_LOXAF)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 34/78 (43.59%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+ +A+ YASK LLD L+QE+ L+  LR++KR++L+D  D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:  483 RAYVEQIEKAFNYASKVLLDFLMQEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELKKPVDDITPPRLEALLELAL 560
[Close]
BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Match: A0A7J7VCS2_PIPKU (Gamma-tubulin complex component n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J7VCS2_PIPKU)

HSP 1 Score: 73.6 bits (179), Expect = 1.740e-13
Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 RMYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFLEISQSELYKPADEIQVERLDSLLHFSV 234
            R Y EQ+ +A+ YASK LLD L++E++L+  LR++KR++L+D  D++  F+++++ EL KP D+I   RL++LL  ++
Sbjct:  482 RAYVEQIEKAFNYASKVLLDFLMEEQDLVAHLRSIKRYFLMDQGDFFVHFMDLTEEELKKPVDDITPTRLEALLELAL 559
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115113.3143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A673KY90_9TELE7.610e-1543.59Gamma-tubulin complex component n=1 Tax=Sinocycloc... [more]
UPI00064377B41.970e-1444.87disintegrin and metalloproteinase domain-containin... [more]
UPI00188F752B3.680e-1444.87gamma-tubulin complex component 2 n=1 Tax=Talpa oc... [more]
A0A6J1WBW5_9SAUR3.710e-1443.59Gamma-tubulin complex component n=1 Tax=Notechis s... [more]
A0A8J6AAH4_GALPY3.740e-1444.87Gamma-tubulin complex component 2 n=1 Tax=Galemys ... [more]
UPI001B7EEA635.020e-1443.59gamma-tubulin complex component 2-like isoform X1 ... [more]
A0A2F0B1U8_ESCRO1.270e-1342.31Gamma-tubulin complex component (Fragment) n=1 Tax... [more]
UPI001055F3571.280e-1342.31gamma-tubulin complex component 2 n=1 Tax=Gouania ... [more]
G3TML2_LOXAF1.280e-1343.59Gamma-tubulin complex component n=3 Tax=Afrotheria... [more]
A0A7J7VCS2_PIPKU1.740e-1342.31Gamma-tubulin complex component n=1 Tax=Pipistrell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115113contigM-pyrifera_M_contig115113:1..234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score73.6
Seed ortholog evalue4.7e-11
Seed eggNOG ortholog118797.XP_007452057.1
Preferred nameTUBGCP2
KEGG koko:K16569
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0031023,GO:0031109,GO:0031122,GO:0031974,GO:0031981,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046785,GO:0048285,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0065003,GO:0070013,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.Gamma-tubulin complex component 2
EggNOG OGs38DYI@33154,3B9AM@33208,3CXP7@33213,3JAET@40674,487RP@7711,494MR@7742,4IYF2@91561,KOG2001@1,KOG2001@2759
COG Functional cat.Z
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Exons1
Model size234
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.387902-CDS-M-pyrifera_M_contig115113:0..2311622815667.387902-CDS-M-pyrifera_M_contig115113:0..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115113 1..231 -
1692277512.6770093-CDS-M-pyrifera_M_contig115113:0..2311692277512.6770093-CDS-M-pyrifera_M_contig115113:0..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115113 1..231 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.3991647-UTR-M-pyrifera_M_contig115113:231..2341622815667.3991647-UTR-M-pyrifera_M_contig115113:231..234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115113 232..234 -
1692277512.686569-UTR-M-pyrifera_M_contig115113:231..2341692277512.686569-UTR-M-pyrifera_M_contig115113:231..234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115113 232..234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115113.3143.1prot_M-pyrifera_M_contig115113.3143.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115113 1..231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115113.3143.1

>prot_M-pyrifera_M_contig115113.3143.1 ID=prot_M-pyrifera_M_contig115113.3143.1|Name=mRNA_M-pyrifera_M_contig115113.3143.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MYEEQVHEAYCYASKRLLDILVQEENLLGKLRALKRFYLLDLCDYYSQFL
EISQSELYKPADEIQVERLDSLLHFSV
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mRNA from alignment at M-pyrifera_M_contig115113:1..234-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115113.3143.1 ID=mRNA_M-pyrifera_M_contig115113.3143.1|Name=mRNA_M-pyrifera_M_contig115113.3143.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig115113:1..234- (Macrocystis pyrifera P11B4 male)
CGCATGTACGAAGAGCAGGTGCACGAGGCCTACTGCTACGCCAGCAAGCG
CCTGCTGGATATCCTCGTGCAGGAGGAGAACCTGCTGGGGAAGCTGCGAG
CCCTGAAGAGGTTCTACCTCCTCGACCTCTGCGACTACTACTCTCAGTTC
CTCGAGATATCCCAGAGTGAGCTCTACAAGCCGGCCGACGAGATCCAGGT
GGAGCGCCTCGACTCTCTCCTCCACTTCTCGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115113:1..234-

>mRNA_M-pyrifera_M_contig115113.3143.1 ID=mRNA_M-pyrifera_M_contig115113.3143.1|Name=mRNA_M-pyrifera_M_contig115113.3143.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig115113:1..234- (Macrocystis pyrifera P11B4 male)
ATGTACGAAGAGCAGGTGCACGAGGCCTACTGCTACGCCAGCAAGCGCCT
GCTGGATATCCTCGTGCAGGAGGAGAACCTGCTGGGGAAGCTGCGAGCCC
TGAAGAGGTTCTACCTCCTCGACCTCTGCGACTACTACTCTCAGTTCCTC
GAGATATCCCAGAGTGAGCTCTACAAGCCGGCCGACGAGATCCAGGTGGA
GCGCCTCGACTCTCTCCTCCACTTCTCGGTGATGTACGAAGAGCAGGTGC
ACGAGGCCTACTGCTACGCCAGCAAGCGCCTGCTGGATATCCTCGTGCAG
GAGGAGAACCTGCTGGGGAAGCTGCGAGCCCTGAAGAGGTTCTACCTCCT
CGACCTCTGCGACTACTACTCTCAGTTCCTCGAGATATCCCAGAGTGAGC
TCTACAAGCCGGCCGACGAGATCCAGGTGGAGCGCCTCGACTCTCTCCTC
CACTTCTCGGTG
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