mRNA_M-pyrifera_M_contig115099.3140.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115099.3140.1
Unique NamemRNA_M-pyrifera_M_contig115099.3140.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: D8LFV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFV7_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 7.720e-42
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:   25 GGGRAGLDDPSREAIPLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGPHAALAGS 276
            G GRAGLDDPSREAIP+SE+TS RLAVTNCDWDHMRA+DLMVLCGSFCP +ARLLSV V+PSDFGLEMMKVEAAAGPHAAL+GS
Sbjct:  217 GVGRAGLDDPSREAIPVSEDTSRRLAVTNCDWDHMRARDLMVLCGSFCPGSARLLSVEVYPSDFGLEMMKVEAAAGPHAALSGS 300
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: UPI000C6FA680 (ESF1 homolog n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=UPI000C6FA680)

HSP 1 Score: 79.3 bits (194), Expect = 2.950e-15
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   70 PLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            P S+E S RLA+ N DWD M+AKDL+ LC SF P    +LSV ++PSDFG E +KVE + GP
Sbjct:  240 PRSDEVSVRLAICNMDWDRMKAKDLLALCSSFTPKGGAVLSVKIYPSDFGKERLKVEESQGP 301
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: A0A3B4V7Y1_SERDU (ESF1 nucleolar pre-rRNA processing protein homolog n=3 Tax=Seriola TaxID=8160 RepID=A0A3B4V7Y1_SERDU)

HSP 1 Score: 79.3 bits (194), Expect = 3.040e-15
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   70 PLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            P S+E S RLA+ N DWD M+AKDL+ LC SF P    +LSV ++PSDFG E +KVE + GP
Sbjct:  177 PRSDEVSVRLAICNMDWDRMKAKDLLALCSSFTPKGGAVLSVKIYPSDFGKERLKVEESQGP 238
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: A0A7C8I850_9PLEO (NUC153 domain-containing protein n=1 Tax=Massariosphaeria phaeospora TaxID=100035 RepID=A0A7C8I850_9PLEO)

HSP 1 Score: 77.8 bits (190), Expect = 1.060e-14
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   52 PSREAIPLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            P    +P+ + TS RLAV N DWD+MRA D+M + GSF PAN  LLSV+++PS+FG+E M+ E   GP
Sbjct:  157 PQTSEVPMGDVTS-RLAVVNMDWDNMRAADIMAVAGSFVPANEELLSVTIYPSEFGMERMQNEELEGP 223
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: A0A672YB56_9TELE (ESF1 nucleolar pre-rRNA processing protein homolog n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672YB56_9TELE)

HSP 1 Score: 77.0 bits (188), Expect = 1.980e-14
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   70 PLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            P S+E S RLAV N DWD M+AKDL+ L  SF P    +LSV +FPSDFG E +K+EA  GP
Sbjct:  229 PRSDEVSTRLAVCNMDWDRMKAKDLLALFNSFVPKGGAVLSVKIFPSDFGKERLKLEATQGP 290
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: Q941E0_ARATH (AT3g01160/T4P13_15 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q941E0_ARATH)

HSP 1 Score: 75.5 bits (184), Expect = 3.180e-14
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   61 EAIPLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            E IPL +E + RLA+ N DW H+ AKDL V+  SF P + R+LSV+V+PS+FGLE MK E   GP
Sbjct:  190 ENIPLIQEETHRLAIVNMDWRHVSAKDLYVVLNSFLPKDGRILSVAVYPSEFGLERMKEEEIHGP 254
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: A0A672I5D8_SALFA (ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672I5D8_SALFA)

HSP 1 Score: 75.9 bits (185), Expect = 4.480e-14
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   70 PLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            P S+E S RLAV N DWD M+AKDL+VL  SFCP    +LSV ++PS FG E +K E   GP
Sbjct:  100 PRSDEVSVRLAVCNMDWDRMKAKDLLVLFNSFCPKGGAVLSVKIYPSQFGKERLKEEETKGP 161
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: A0A672I777_SALFA (ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) n=4 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672I777_SALFA)

HSP 1 Score: 75.9 bits (185), Expect = 5.020e-14
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   70 PLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            P S+E S RLAV N DWD M+AKDL+VL  SFCP    +LSV ++PS FG E +K E   GP
Sbjct:  180 PRSDEVSVRLAVCNMDWDRMKAKDLLVLFNSFCPKGGAVLSVKIYPSQFGKERLKEEETKGP 241
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: A0A4Z2B027_9TELE (NUC153 domain-containing protein n=4 Tax=Takifugu TaxID=31032 RepID=A0A4Z2B027_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 1.280e-13
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   70 PLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            P +EE S RLAV N DWD ++AKDL+VL  SF P    +LSV ++PS+FG E +K+E A GP
Sbjct:  252 PRTEEVSTRLAVCNMDWDRLKAKDLLVLLNSFTPTGGAVLSVKIYPSEFGKERLKMEDAQGP 313
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BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Match: A0A6A6VXG4_9PEZI (NUC153 domain-containing protein n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6VXG4_9PEZI)

HSP 1 Score: 74.7 bits (182), Expect = 1.290e-13
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   46 DDPSREAIPLSEETSCRLAVTNCDWDHMRAKDLMVLCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGP 255
            D PS+EA+P+ E +S RLA  N DWD++RA D+M +  SF PA  R++SV V+PS+FG E ++ E   GP
Sbjct:  150 DTPSQEAVPMGEVSS-RLAAVNLDWDNIRAVDIMAVAESFAPAEGRIISVIVYPSEFGREQLEREELEGP 218
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115099.3140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV7_ECTSI7.720e-4288.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000C6FA6802.950e-1556.45ESF1 homolog n=1 Tax=Seriola lalandi dorsalis TaxI... [more]
A0A3B4V7Y1_SERDU3.040e-1556.45ESF1 nucleolar pre-rRNA processing protein homolog... [more]
A0A7C8I850_9PLEO1.060e-1452.94NUC153 domain-containing protein n=1 Tax=Massarios... [more]
A0A672YB56_9TELE1.980e-1458.06ESF1 nucleolar pre-rRNA processing protein homolog... [more]
Q941E0_ARATH3.180e-1455.38AT3g01160/T4P13_15 n=1 Tax=Arabidopsis thaliana Ta... [more]
A0A672I5D8_SALFA4.480e-1456.45ESF1, nucleolar pre-rRNA processing protein, homol... [more]
A0A672I777_SALFA5.020e-1456.45ESF1, nucleolar pre-rRNA processing protein, homol... [more]
A0A4Z2B027_9TELE1.280e-1354.84NUC153 domain-containing protein n=4 Tax=Takifugu ... [more]
A0A6A6VXG4_9PEZI1.290e-1350.00NUC153 domain-containing protein n=1 Tax=Pseudovir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115099contigM-pyrifera_M_contig115099:71..352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog2880.D8LFV7
Preferred nameESF1
KEGG koko:K22197
KEGG Pathwayko05225,map05225
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5638@1,KOG2318@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_005350.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size282
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.1028242-CDS-M-pyrifera_M_contig115099:70..3521622815667.1028242-CDS-M-pyrifera_M_contig115099:70..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115099 71..352 -
1692277512.5085266-CDS-M-pyrifera_M_contig115099:70..3521692277512.5085266-CDS-M-pyrifera_M_contig115099:70..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115099 71..352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115099.3140.1prot_M-pyrifera_M_contig115099.3140.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115099 71..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115099.3140.1

>prot_M-pyrifera_M_contig115099.3140.1 ID=prot_M-pyrifera_M_contig115099.3140.1|Name=mRNA_M-pyrifera_M_contig115099.3140.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MTTTTCKDGGGRAGLDDPSREAIPLSEETSCRLAVTNCDWDHMRAKDLMV
LCGSFCPANARLLSVSVFPSDFGLEMMKVEAAAGPHAALAGSR*
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mRNA from alignment at M-pyrifera_M_contig115099:71..352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115099.3140.1 ID=mRNA_M-pyrifera_M_contig115099.3140.1|Name=mRNA_M-pyrifera_M_contig115099.3140.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig115099:71..352- (Macrocystis pyrifera P11B4 male)
ATGACAACAACCACATGCAAAGATGGCGGAGGCAGGGCGGGACTGGACGA
CCCCTCCCGGGAAGCCATCCCACTCTCTGAGGAAACCTCCTGCCGCCTCG
CGGTGACCAATTGCGACTGGGACCACATGCGCGCCAAGGACCTCATGGTG
CTGTGCGGATCGTTCTGCCCCGCCAACGCCAGGCTGCTGTCGGTATCGGT
GTTTCCGTCCGATTTTGGGCTGGAGATGATGAAGGTCGAGGCTGCAGCGG
GACCGCACGCCGCCCTGGCTGGCAGCCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115099:71..352-

>mRNA_M-pyrifera_M_contig115099.3140.1 ID=mRNA_M-pyrifera_M_contig115099.3140.1|Name=mRNA_M-pyrifera_M_contig115099.3140.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig115099:71..352- (Macrocystis pyrifera P11B4 male)
ATGACAACAACCACATGCAAAGATGGCGGAGGCAGGGCGGGACTGGACGA
CCCCTCCCGGGAAGCCATCCCACTCTCTGAGGAAACCTCCTGCCGCCTCG
CGGTGACCAATTGCGACTGGGACCACATGCGCGCCAAGGACCTCATGGTG
CTGTGCGGATCGTTCTGCCCCGCCAACGCCAGGCTGCTGTCGGTATCGGT
GTTTCCGTCCGATTTTGGGCTGGAGATGATGAAGGTCGAGGCTGCAGCGG
GACCGCACGCCGCCCTGGCTGGCAGCCGGTGAATGACAACAACCACATGC
AAAGATGGCGGAGGCAGGGCGGGACTGGACGACCCCTCCCGGGAAGCCAT
CCCACTCTCTGAGGAAACCTCCTGCCGCCTCGCGGTGACCAATTGCGACT
GGGACCACATGCGCGCCAAGGACCTCATGGTGCTGTGCGGATCGTTCTGC
CCCGCCAACGCCAGGCTGCTGTCGGTATCGGTGTTTCCGTCCGATTTTGG
GCTGGAGATGATGAAGGTCGAGGCTGCAGCGGGACCGCACGCCGCCCTGG
CTGGCAGCCGGTGA
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