mRNA_M-pyrifera_M_contig115059.3134.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115059.3134.1
Unique NamemRNA_M-pyrifera_M_contig115059.3134.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115059.3134.1 vs. uniprot
Match: A0A5A8DV61_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DV61_CAFRO)

HSP 1 Score: 186 bits (473), Expect = 6.020e-53
Identity = 92/189 (48.68%), Postives = 118/189 (62.43%), Query Frame = 1 
Query:    7 DTDNPQKSLPQPLDDVGTNWLVSTMDELLPYT---PKSDVNAYTMLTWGLNKRLDTNCTTIACVLDHLRSRNMTLTQAMAIPSSDAWRVGKNETLVCSCFVSRVWQEGFGSNFPDIVSTEQSPKDNYQMGIYSKTRFDASICPPPALRTSPNGNYCQIMGPFAQELDHYNQYGPYKNMNNACASQWPDF 564
            DT +PQ+SLP+P+DD    WL+  +D +LPY    P + V AY ML  G NKRL T+C  +AC+   L  +N TL   +A+P  D++    +E +VCS F +RVWQ GFGS  P    +EQ+PKDNYQ  IY    FDAS CP   L T+PNGNYCQ+MG +   L  YN   PY N+NN C SQWP +
Sbjct:  363 DTADPQRSLPEPMDDQVEKWLLQMLDTVLPYNASDPHAKVTAYRMLIMGANKRLGTDCYDVACLQAVLAPQNRTLGSVLAMPELDSYTYFGSEEMVCSEFAARVWQHGFGSQLPVFQGSEQTPKDNYQFAIYDPDHFDASNCPV-GLHTTPNGNYCQLMGQWNLPLKGYNSIVPYANINNHCESQWPSY 550
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115059.3134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8DV61_CAFRO6.020e-5348.68Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115059contigM-pyrifera_M_contig115059:2..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog5911.EAR84506
Hectar predicted targeting categoryother localisation
EggNOG OGs28HIU@1,2QPWP@2759,3ZB0U@5878
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.810265-CDS-M-pyrifera_M_contig115059:1..5681622815666.810265-CDS-M-pyrifera_M_contig115059:1..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115059 2..568 +
1692277512.4014711-CDS-M-pyrifera_M_contig115059:1..5681692277512.4014711-CDS-M-pyrifera_M_contig115059:1..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115059 2..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115059.3134.1prot_M-pyrifera_M_contig115059.3134.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115059 2..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115059.3134.1

>prot_M-pyrifera_M_contig115059.3134.1 ID=prot_M-pyrifera_M_contig115059.3134.1|Name=mRNA_M-pyrifera_M_contig115059.3134.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
WWDTDNPQKSLPQPLDDVGTNWLVSTMDELLPYTPKSDVNAYTMLTWGLN
KRLDTNCTTIACVLDHLRSRNMTLTQAMAIPSSDAWRVGKNETLVCSCFV
SRVWQEGFGSNFPDIVSTEQSPKDNYQMGIYSKTRFDASICPPPALRTSP
NGNYCQIMGPFAQELDHYNQYGPYKNMNNACASQWPDFK
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mRNA from alignment at M-pyrifera_M_contig115059:2..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115059.3134.1 ID=mRNA_M-pyrifera_M_contig115059.3134.1|Name=mRNA_M-pyrifera_M_contig115059.3134.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig115059:2..568+ (Macrocystis pyrifera P11B4 male)
TGGTGGGACACAGACAACCCACAAAAAAGCCTTCCACAACCTCTTGACGA
CGTTGGCACGAATTGGCTTGTTTCCACGATGGATGAACTCCTCCCGTACA
CTCCCAAGTCTGACGTGAATGCGTACACTATGTTGACTTGGGGCTTGAAC
AAGCGCTTGGATACCAACTGTACCACAATTGCTTGCGTCTTGGATCATCT
TCGTAGTCGCAACATGACCCTCACACAAGCAATGGCAATCCCCTCCAGCG
ATGCCTGGCGAGTTGGGAAGAACGAAACCCTCGTCTGCTCTTGTTTTGTT
TCACGCGTATGGCAAGAGGGTTTCGGCTCAAACTTTCCAGACATTGTCAG
CACGGAACAAAGTCCCAAGGACAATTACCAAATGGGAATCTACTCCAAAA
CACGCTTTGATGCATCCATCTGTCCTCCACCAGCACTGCGCACCTCCCCC
AACGGGAACTACTGCCAAATCATGGGACCTTTCGCACAAGAATTGGATCA
CTACAACCAGTATGGCCCATACAAGAACATGAACAACGCATGCGCCAGCC
AATGGCCAGATTTCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115059:2..568+

>mRNA_M-pyrifera_M_contig115059.3134.1 ID=mRNA_M-pyrifera_M_contig115059.3134.1|Name=mRNA_M-pyrifera_M_contig115059.3134.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig115059:2..568+ (Macrocystis pyrifera P11B4 male)
TGGTGGGACACAGACAACCCACAAAAAAGCCTTCCACAACCTCTTGACGA
CGTTGGCACGAATTGGCTTGTTTCCACGATGGATGAACTCCTCCCGTACA
CTCCCAAGTCTGACGTGAATGCGTACACTATGTTGACTTGGGGCTTGAAC
AAGCGCTTGGATACCAACTGTACCACAATTGCTTGCGTCTTGGATCATCT
TCGTAGTCGCAACATGACCCTCACACAAGCAATGGCAATCCCCTCCAGCG
ATGCCTGGCGAGTTGGGAAGAACGAAACCCTCGTCTGCTCTTGTTTTGTT
TCACGCGTATGGCAAGAGGGTTTCGGCTCAAACTTTCCAGACATTGTCAG
CACGGAACAAAGTCCCAAGGACAATTACCAAATGGGAATCTACTCCAAAA
CACGCTTTGATGCATCCATCTGTCCTCCACCAGCACTGCGCACCTCCCCC
AACGGGAACTACTGCCAAATCATGGGACCTTTCGCACAAGAATTGGATCA
CTACAACCAGTATGGCCCATACAAGAACATGAACAACGCATGCGCCAGCC
AATGGCCAGATTTCAAATGGTGGGACACAGACAACCCACAAAAAAGCCTT
CCACAACCTCTTGACGACGTTGGCACGAATTGGCTTGTTTCCACGATGGA
TGAACTCCTCCCGTACACTCCCAAGTCTGACGTGAATGCGTACACTATGT
TGACTTGGGGCTTGAACAAGCGCTTGGATACCAACTGTACCACAATTGCT
TGCGTCTTGGATCATCTTCGTAGTCGCAACATGACCCTCACACAAGCAAT
GGCAATCCCCTCCAGCGATGCCTGGCGAGTTGGGAAGAACGAAACCCTCG
TCTGCTCTTGTTTTGTTTCACGCGTATGGCAAGAGGGTTTCGGCTCAAAC
TTTCCAGACATTGTCAGCACGGAACAAAGTCCCAAGGACAATTACCAAAT
GGGAATCTACTCCAAAACACGCTTTGATGCATCCATCTGTCCTCCACCAG
CACTGCGCACCTCCCCCAACGGGAACTACTGCCAAATCATGGGACCTTTC
GCACAAGAATTGGATCACTACAACCAGTATGGCCCATACAAGAACATGAA
CAACGCATGCGCCAGCCAATGGCCAGATTTCAAA
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