mRNA_M-pyrifera_M_contig115018.3122.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115018.3122.1
Unique NamemRNA_M-pyrifera_M_contig115018.3122.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115018.3122.1 vs. uniprot
Match: A0A5A8EHW5_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHW5_CAFRO)

HSP 1 Score: 108 bits (271), Expect = 3.780e-24
Identity = 75/172 (43.60%), Postives = 97/172 (56.40%), Query Frame = 1
Query:   25 QDRLARAAENLEDNLRRHWPRAGVLETESRRPREAELFAHAQRLARHRQTWHATAKKQEEMWTTCEDAARKSMQDCAERLEALTGSLESQTSLAGLQAVEKRAKALIAGFLETAAKDLAQCRVYASETAGGAASAAGAPSALFTLNREFLRTCVPFAEGGDYDAQEADVVRD 540
            +DR++     L + +R HWPR    ETE R PREAEL AHAQRL RH + W   A +Q + +    +AAR+       RL  L  SL +Q SLA LQ  + RAKA++  + ET A+       + +  AG AA+    P  L  LNREF+RTC  FAEGG+YD  E   VRD
Sbjct: 1299 EDRVSLFTAELTERVRLHWPRQARAETELRAPREAELLAHAQRLERHCRAWREKADRQAKAFDGEAEAARQHTAAFVARLAELQSSLPAQASLAALQGQQSRAKAMLVAY-ETEAEG------WRARLAGYAAAE---PRRLTALNREFMRTCTRFAEGGEYDDAE---VRD 1457          
BLAST of mRNA_M-pyrifera_M_contig115018.3122.1 vs. uniprot
Match: A0A812UFE4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UFE4_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 7.060e-20
Identity = 64/168 (38.10%), Postives = 84/168 (50.00%), Query Frame = 1
Query:   55 LEDNLRRHWPRAGVLETESRRPREAELFAHAQRLARHRQTWHATAKKQEEMWTTCEDAARKSMQDCAERLEALTGSLESQTSLAGLQAVEKRAKALIA----GFLETAAK--DLAQCRVYASETAGGAASAAGAPSALFTLNREFLRTCVPFAEGGDYDAQEADVVRD 540
            LE+ LRRHWPRAG LET  R PR A L AHAQ++ +H + WHA  +  +  W     A  + + +  ERL  L   +  Q  LA LQ V  RAK ++     G+ E   +   L Q  V                 AL   N +FLRTCVPF+EGGD+   E D + +
Sbjct:   93 LEERLRRHWPRAGRLETRVREPRGAALLAHAQKVRKHSRAWHARVQDLQAEWEAAVAAVLRDLAEGRERLRNLEAVVHDQEDLARLQGVLHRAKQVLGEVRDGYEEALRRLQSLIQLGV----------------KALHASNNDFLRTCVPFSEGGDWAVPELDQLHE 244          
BLAST of mRNA_M-pyrifera_M_contig115018.3122.1 vs. uniprot
Match: A0A7S1C3X5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3X5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.650e-13
Identity = 59/183 (32.24%), Postives = 90/183 (49.18%), Query Frame = 1
Query:   10 VSAVEQDRLARAAENLEDNLRRHWPRAGVLETESRRPREAELFAHAQRLARH-RQTWHATAKKQEEMWTTCEDAARKSMQDCAERLEALTGSLESQTSLAGLQAVEKRAKALIAGFLETAAKDLAQCRVYASETAGGAASAAGAPSALFTLNREFLRTCVPFAEGGDYDAQEADVVRDDLGGL 555
            V  + + R +   E +E+ LRRHWPR G  E + ++PRE EL AH Q+  RH R+     AK   +      +A  ++    A + +AL  +L S+T+LA LQ V+++ K     F     +   + +V+  E           P+ L   N EFLR+C  FAEGG+Y   E  + +  L  L
Sbjct:   85 VQELYETRASALTEEVEERLRRHWPRKGHAEVKVKQPREGELIAHRQKFERHVRKMLERNAKHDTDFDKLIVEAGEEAKTYLA-KAKALAKALPSRTNLAALQGVQQKMKVRRQEFRLKCEEWHTRVQVFTREE----------PNRLLQNNAEFLRSCRLFAEGGEYAKAEVAIAKRGLADL 256          
BLAST of mRNA_M-pyrifera_M_contig115018.3122.1 vs. uniprot
Match: A0A078AIE8_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AIE8_STYLE)

HSP 1 Score: 62.0 bits (149), Expect = 6.860e-8
Identity = 50/183 (27.32%), Postives = 83/183 (45.36%), Query Frame = 1
Query:   10 VSAVEQDRLARAAENLEDNLRRHWPRAGVLETESRRPREAELFAHAQRLARHRQTWHATAKKQEEMWTTCEDAARKSMQDCAERLEALTGSLESQTSLAGLQAVEKRAKALIAGFLETAAKDLAQCRVYASETAGGAASAAGAPSALFTLNREFLRTCVPFAEGGDYDAQEADVVRDDLGGLD 558
            V    +D + +  + L++NLR+ WPR G LE E  + R+A++ AH ++  R  ++        EE W    +   K   +   + + L G+L    +LA LQ V ++ K     F E       +CR Y  +    A +    P  L   N+E L +CV F + G+Y   E +  R  +  +D
Sbjct:  791 VQRESKDLIDKNVDELDENLRKQWPRKGRLEVEVYQERKAQITAHNKKYERQVRSCLEKYNLLEEQWEYVVETIEKEFANYQVQQDRLRGALPDGKNLAELQGVSRKEKDSCQTFEE-------KCREYQDKLYDIAVTQ---PDILILQNKEMLDSCVLFEKRGNYSRPEVEWYRGQMKEID 963          
BLAST of mRNA_M-pyrifera_M_contig115018.3122.1 vs. uniprot
Match: A0A7S3MHH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHH1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.160e-6
Identity = 47/174 (27.01%), Postives = 80/174 (45.98%), Query Frame = 1
Query:   37 ARAAENLEDNLRRHWPRAGVLETESRRPREAELFAHAQRLARHRQTWHATAKKQEEMWTTCE---DAARKSMQDCAERLEALTGSLESQT----SLAGLQAVEKRAKALIAGFLETAAKDLAQCRVYAS-ETAGGAASAAGAPSALFTLNREFLRTCVPFAEGGDYDAQEADVV 534
            A   + LED +R HWPR G +ET+ ++PREAEL  H ++      TW   +  Q++M    E   D+      +C   +  +T    S T    +LA LQA++ +A+ +   F  + A+ LA     A  ET            ++    ++F + C P   G +    E++++
Sbjct:   32 AELTDQLEDQIRNHWPRRGRVETQIKQPREAELLGHKEK------TWRHISSIQQKMIQAQENFGDSLTMGRNECNTYVNDMTALRNSLTGDFKNLAFLQAIDVKARGVTQSFQASGAERLAILSQIAQVET-----------DSIIAFAKDFRKICPPQVHGEEGGYSESEIL 188          
BLAST of mRNA_M-pyrifera_M_contig115018.3122.1 vs. uniprot
Match: J9HWM8_9SPIT (Uncharacterized protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HWM8_9SPIT)

HSP 1 Score: 52.8 bits (125), Expect = 9.950e-5
Identity = 46/183 (25.14%), Postives = 80/183 (43.72%), Query Frame = 1
Query:   10 VSAVEQDRLARAAENLEDNLRRHWPRAGVLETESRRPREAELFAHAQRLARHRQTWHATAKKQEEMWTTCEDAARKSMQDCAERLEALTGSLESQTSLAGLQAVEKRAKALIAGFLETAAKDLAQCRVYASETAGGAASAAGAPSALFTLNREFLRTCVPFAEGGDYDAQEADVVRDDLGGLD 558
            V    +D + +  + L++NLR+ WPR G LE E  + R++++ AH ++  R  ++        EE W    +   K       + + L   L    +LA LQ V ++ K     F E       +CR +  +    A + +     L   N+E L +CV F + G+Y   E    R+ +  +D
Sbjct:  818 VQRESKDLIDKNVDELDENLRKQWPRKGRLEVEVYQERKSQITAHNKKYERQVRSCLEKFNLLEEQWEYVSETVEKEFAIYQSQQDKLRVQLPDGKNLAELQGVSRKEKDSCQTFEE-------KCREFYDKLHDIAITQS---EILVQQNKEMLESCVIFEKKGNYAKAEVQWYRNQMNEID 990          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115018.3122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8EHW5_CAFRO3.780e-2443.60Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A812UFE4_9DINO7.060e-2038.10Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S1C3X5_9STRA1.650e-1332.24Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A078AIE8_STYLE6.860e-827.32Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A7S3MHH1_9STRA3.160e-627.01Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
J9HWM8_9SPIT9.950e-525.14Uncharacterized protein n=2 Tax=Oxytricha trifalla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115018contigM-pyrifera_M_contig115018:5..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog44056.XP_009042039.1
Preferred nameCCDC180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4455)
EggNOG OGs2CN0H@1,2QT47@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.2349975-CDS-M-pyrifera_M_contig115018:4..5621622815666.2349975-CDS-M-pyrifera_M_contig115018:4..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115018 5..562 -
1692277512.1483746-CDS-M-pyrifera_M_contig115018:4..5621692277512.1483746-CDS-M-pyrifera_M_contig115018:4..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115018 5..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115018.3122.1prot_M-pyrifera_M_contig115018.3122.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115018 5..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115018.3122.1

>prot_M-pyrifera_M_contig115018.3122.1 ID=prot_M-pyrifera_M_contig115018.3122.1|Name=mRNA_M-pyrifera_M_contig115018.3122.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
QAAVSAVEQDRLARAAENLEDNLRRHWPRAGVLETESRRPREAELFAHAQ
RLARHRQTWHATAKKQEEMWTTCEDAARKSMQDCAERLEALTGSLESQTS
LAGLQAVEKRAKALIAGFLETAAKDLAQCRVYASETAGGAASAAGAPSAL
FTLNREFLRTCVPFAEGGDYDAQEADVVRDDLGGLD
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mRNA from alignment at M-pyrifera_M_contig115018:5..562-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115018.3122.1 ID=mRNA_M-pyrifera_M_contig115018.3122.1|Name=mRNA_M-pyrifera_M_contig115018.3122.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig115018:5..562- (Macrocystis pyrifera P11B4 male)
CAAGCTGCAGTGAGTGCTGTGGAACAAGATCGCCTTGCACGAGCAGCTGA AAACTTGGAAGACAACTTGCGCAGACATTGGCCAAGAGCAGGTGTGCTAG AAACAGAATCAAGGCGTCCAAGGGAAGCAGAATTATTCGCTCATGCGCAA CGATTAGCAAGGCACCGTCAAACATGGCACGCAACTGCCAAGAAACAAGA AGAGATGTGGACGACGTGTGAAGATGCTGCGCGAAAGTCGATGCAAGATT GTGCTGAACGATTGGAAGCACTTACAGGCTCATTGGAATCACAAACGTCG TTGGCAGGGTTGCAGGCAGTGGAAAAGCGAGCAAAGGCGTTGATTGCTGG GTTTTTGGAGACTGCAGCAAAAGATCTTGCACAATGTCGAGTGTATGCAT CTGAAACAGCTGGTGGTGCTGCATCAGCTGCTGGTGCACCTTCTGCACTG TTTACGTTGAATCGTGAGTTCTTACGTACATGTGTGCCTTTTGCAGAAGG TGGTGATTATGATGCTCAAGAAGCTGATGTAGTGCGTGATGATTTGGGTG GATTGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115018:5..562-

>mRNA_M-pyrifera_M_contig115018.3122.1 ID=mRNA_M-pyrifera_M_contig115018.3122.1|Name=mRNA_M-pyrifera_M_contig115018.3122.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig115018:5..562- (Macrocystis pyrifera P11B4 male)
CAAGCTGCAGTGAGTGCTGTGGAACAAGATCGCCTTGCACGAGCAGCTGA
AAACTTGGAAGACAACTTGCGCAGACATTGGCCAAGAGCAGGTGTGCTAG
AAACAGAATCAAGGCGTCCAAGGGAAGCAGAATTATTCGCTCATGCGCAA
CGATTAGCAAGGCACCGTCAAACATGGCACGCAACTGCCAAGAAACAAGA
AGAGATGTGGACGACGTGTGAAGATGCTGCGCGAAAGTCGATGCAAGATT
GTGCTGAACGATTGGAAGCACTTACAGGCTCATTGGAATCACAAACGTCG
TTGGCAGGGTTGCAGGCAGTGGAAAAGCGAGCAAAGGCGTTGATTGCTGG
GTTTTTGGAGACTGCAGCAAAAGATCTTGCACAATGTCGAGTGTATGCAT
CTGAAACAGCTGGTGGTGCTGCATCAGCTGCTGGTGCACCTTCTGCACTG
TTTACGTTGAATCGTGAGTTCTTACGTACATGTGTGCCTTTTGCAGAAGG
TGGTGATTATGATGCTCAAGAAGCTGATGTAGTGCGTGATGATTTGGGTG
GATTGGATCAAGCTGCAGTGAGTGCTGTGGAACAAGATCGCCTTGCACGA
GCAGCTGAAAACTTGGAAGACAACTTGCGCAGACATTGGCCAAGAGCAGG
TGTGCTAGAAACAGAATCAAGGCGTCCAAGGGAAGCAGAATTATTCGCTC
ATGCGCAACGATTAGCAAGGCACCGTCAAACATGGCACGCAACTGCCAAG
AAACAAGAAGAGATGTGGACGACGTGTGAAGATGCTGCGCGAAAGTCGAT
GCAAGATTGTGCTGAACGATTGGAAGCACTTACAGGCTCATTGGAATCAC
AAACGTCGTTGGCAGGGTTGCAGGCAGTGGAAAAGCGAGCAAAGGCGTTG
ATTGCTGGGTTTTTGGAGACTGCAGCAAAAGATCTTGCACAATGTCGAGT
GTATGCATCTGAAACAGCTGGTGGTGCTGCATCAGCTGCTGGTGCACCTT
CTGCACTGTTTACGTTGAATCGTGAGTTCTTACGTACATGTGTGCCTTTT
GCAGAAGGTGGTGATTATGATGCTCAAGAAGCTGATGTAGTGCGTGATGA
TTTGGGTGGATTGGAT
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