mRNA_M-pyrifera_M_contig114969.3108.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114969.3108.1
Unique NamemRNA_M-pyrifera_M_contig114969.3108.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: F4Q7A6_CAVFA (RhoGAP domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q7A6_CAVFA)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 YEELKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLE 171
            Y  +K EKR LQ  LH+YQ  FV++ GRKVQF++DRLPV+KEY RYK LK  L  LE
Sbjct:  992 YNRVKLEKRALQVDLHKYQTDFVKRTGRKVQFVDDRLPVEKEYERYKLLKQELSDLE 1048          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: UPI000644B1BA (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B1BA)

HSP 1 Score: 61.2 bits (147), Expect = 2.530e-9
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   10 LKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELK 150
            LK EKR LQ  LH+YQ  F +++GR+VQFL+DRLPVQKEY RYK LK
Sbjct:  789 LKHEKRTLQMDLHRYQTDFTKKHGRRVQFLDDRLPVQKEYERYKHLK 835          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: GACU_DICDI (Rho GTPase-activating protein gacU n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=GACU_DICDI)

HSP 1 Score: 60.5 bits (145), Expect = 4.760e-9
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 YEELKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLE 171
            Y ++K EKR LQ  LH+YQ  F +++GRKVQF+EDR+PVQ EY +YKELK  +  LE
Sbjct: 1064 YIKVKGEKRSLQIDLHRYQSEFTKKHGRKVQFVEDRVPVQAEYEKYKELKIEIVALE 1120          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: F0ZNR0_DICPU (Rho-GAP domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNR0_DICPU)

HSP 1 Score: 59.7 bits (143), Expect = 8.860e-9
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 YEELKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLE 171
            Y ++K EKR LQ  LH+YQ  F +++GRKVQF+EDR+PVQ EY +YKELK  L  +E
Sbjct:  880 YIKVKGEKRTLQIDLHRYQSDFTKKHGRKVQFVEDRVPVQTEYEKYKELKIELTLIE 936          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: A0A8J4PVS7_9MYCE (Rho-GAP domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PVS7_9MYCE)

HSP 1 Score: 58.2 bits (139), Expect = 3.080e-8
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 YEELKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLEASGATTTSS 198
            Y  +K EKR LQ +LH+YQ  F++++GRK+QF+EDR PVQ +Y +YK+LK+ L  +E   A T+ S
Sbjct:  721 YHLVKTEKRTLQIELHKYQSDFMKKHGRKLQFVEDREPVQVQYTKYKDLKSELSTIEKYLAYTSGS 786          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: A0A7S4HWW6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HWW6_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 4.140e-8
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   10 LKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLE 171
            LKKEK+ LQ  LHQ+Q  F+ Q+GRKVQ+ +DR PVQ+EY  YK LKA L  +E
Sbjct:  408 LKKEKKRLQCFLHQFQAEFITQHGRKVQYAQDRAPVQREYDEYKALKAKLAAIE 461          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: A0A151ZIB2_9MYCE (RhoGAP domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZIB2_9MYCE)

HSP 1 Score: 56.2 bits (134), Expect = 1.480e-7
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 YEELKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLE 171
            Y ++K EKR +Q  L +YQ  F++++GRKVQF EDR+PVQ EY +YKELK  +  +E
Sbjct:  850 YIKVKNEKRNVQVDLLKYQTEFMKKHGRKVQFTEDRIPVQSEYGKYKELKLEMTNIE 906          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: A0A0L0HCM8_SPIPD (Rho-GAP domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HCM8_SPIPD)

HSP 1 Score: 54.7 bits (130), Expect = 5.180e-7
Identity = 28/58 (48.28%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 YEELKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLEA 174
            Y++L+ EK+ LQ +LH++Q+ F+R++GR ++  EDR P+ +EYARYK+LK  L  +EA
Sbjct:  946 YKKLRYEKKLLQMRLHKFQEDFMREHGRALKTAEDRAPIAREYARYKDLKEQLADMEA 1003          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: A0A507ENZ1_9FUNG (Rho-GAP domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ENZ1_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 7.090e-7
Identity = 27/58 (46.55%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 YEELKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLEA 174
            Y++L+ EK+ LQ +LH++Q+ F+R++GR ++  +DR P+ +EYARYK+LK  L ++EA
Sbjct:  967 YKKLRYEKKLLQMRLHKFQEDFMREHGRALKTADDRAPIAREYARYKDLKEQLAEMEA 1024          
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Match: A0A0L0DF89_THETB (Rho-GAP domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DF89_THETB)

HSP 1 Score: 50.8 bits (120), Expect = 1.210e-5
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   10 LKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELKAILEQLEA 174
            +K  KR LQ  LH YQ  F+  +GRKVQ++EDR P+Q +Y  YKE K  L + +A
Sbjct: 4525 IKDRKRKLQVLLHHYQSEFMAMHGRKVQYVEDRAPIQSQYQAYKECKVRLAEADA 4579          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114969.3108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
F4Q7A6_CAVFA1.360e-961.40RhoGAP domain-containing protein n=1 Tax=Cavenderi... [more]
UPI000644B1BA2.530e-968.09hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
GACU_DICDI4.760e-957.89Rho GTPase-activating protein gacU n=1 Tax=Dictyos... [more]
F0ZNR0_DICPU8.860e-957.89Rho-GAP domain-containing protein n=1 Tax=Dictyost... [more]
A0A8J4PVS7_9MYCE3.080e-850.00Rho-GAP domain-containing protein n=1 Tax=Polyspho... [more]
A0A7S4HWW6_9EUKA4.140e-859.26Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A151ZIB2_9MYCE1.480e-752.63RhoGAP domain-containing protein n=1 Tax=Tieghemos... [more]
A0A0L0HCM8_SPIPD5.180e-748.28Rho-GAP domain-containing protein n=1 Tax=Spizello... [more]
A0A507ENZ1_9FUNG7.090e-746.55Rho-GAP domain-containing protein n=1 Tax=Spizello... [more]
A0A0L0DF89_THETB1.210e-549.09Rho-GAP domain-containing protein n=1 Tax=Thecamon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114969contigM-pyrifera_M_contig114969:78..281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue9.5e-08
Seed eggNOG ortholog44689.DDB0233772
KEGG koko:K20642
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0043087,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0065007,GO:0065009
EggNOG free text desc.GTPase-activator protein for Rho-like GTPases
EggNOG OGs3XDC6@554915,KOG4270@1,KOG4270@2759
COG Functional cat.U
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.4424024-CDS-M-pyrifera_M_contig114969:77..2811622815665.4424024-CDS-M-pyrifera_M_contig114969:77..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114969 78..281 +
1692277511.7180762-CDS-M-pyrifera_M_contig114969:77..2811692277511.7180762-CDS-M-pyrifera_M_contig114969:77..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114969 78..281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114969.3108.1prot_M-pyrifera_M_contig114969.3108.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114969 78..281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114969.3108.1

>prot_M-pyrifera_M_contig114969.3108.1 ID=prot_M-pyrifera_M_contig114969.3108.1|Name=mRNA_M-pyrifera_M_contig114969.3108.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
YEELKKEKRGLQYKLHQYQQTFVRQYGRKVQFLEDRLPVQKEYARYKELK
AILEQLEASGATTTSSAD
back to top

mRNA from alignment at M-pyrifera_M_contig114969:78..281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114969.3108.1 ID=mRNA_M-pyrifera_M_contig114969.3108.1|Name=mRNA_M-pyrifera_M_contig114969.3108.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig114969:78..281+ (Macrocystis pyrifera P11B4 male)
TACGAGGAACTGAAGAAGGAGAAGCGGGGGCTGCAGTACAAGCTGCACCA GTATCAGCAGACCTTTGTGCGGCAGTACGGCCGCAAAGTACAGTTTCTCG AGGACAGACTGCCGGTGCAGAAGGAGTACGCGCGCTACAAGGAGCTCAAG GCCATTCTCGAGCAGCTCGAGGCGTCTGGCGCAACCACAACCAGCTCTGC TGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114969:78..281+

>mRNA_M-pyrifera_M_contig114969.3108.1 ID=mRNA_M-pyrifera_M_contig114969.3108.1|Name=mRNA_M-pyrifera_M_contig114969.3108.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig114969:78..281+ (Macrocystis pyrifera P11B4 male)
TACGAGGAACTGAAGAAGGAGAAGCGGGGGCTGCAGTACAAGCTGCACCA
GTATCAGCAGACCTTTGTGCGGCAGTACGGCCGCAAAGTACAGTTTCTCG
AGGACAGACTGCCGGTGCAGAAGGAGTACGCGCGCTACAAGGAGCTCAAG
GCCATTCTCGAGCAGCTCGAGGCGTCTGGCGCAACCACAACCAGCTCTGC
TGATTACGAGGAACTGAAGAAGGAGAAGCGGGGGCTGCAGTACAAGCTGC
ACCAGTATCAGCAGACCTTTGTGCGGCAGTACGGCCGCAAAGTACAGTTT
CTCGAGGACAGACTGCCGGTGCAGAAGGAGTACGCGCGCTACAAGGAGCT
CAAGGCCATTCTCGAGCAGCTCGAGGCGTCTGGCGCAACCACAACCAGCT
CTGCTGAT
back to top