mRNA_M-pyrifera_M_contig114959.3104.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114959.3104.1
Unique NamemRNA_M-pyrifera_M_contig114959.3104.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114959.3104.1 vs. uniprot
Match: A0A7D5MTH8_9PROT (Uncharacterized protein n=1 Tax=Defluviicoccus sp. TaxID=2682137 RepID=A0A7D5MTH8_9PROT)

HSP 1 Score: 118 bits (295), Expect = 5.380e-31
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:   10 VVERPLGPQEAMFTELVRRSSGGVQLVTIAELVTPLPVDDVRFRLKIVHERHPMLHARVEDRDRPWWVCDVPFESISVSTREMGADFDLERLYAAE 297
            V+ERPLGPQEA+F EL RR++G VQL  IA    P+    +R  L+ VHERHPML AR++DRDR WWVCDVPFE I +  +  G+  DLE LYAAE
Sbjct:    6 VMERPLGPQEALFGELNRRANGAVQLTCIAAFDRPVEAQRLRSALRGVHERHPMLRARMQDRDRLWWVCDVPFERIDIRMQAPGSAVDLEALYAAE 101
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BLAST of mRNA_M-pyrifera_M_contig114959.3104.1 vs. uniprot
Match: A0A5P9D2N7_9HYPH (Condensation domain protein n=2 Tax=Labrenzia sp. THAF82 TaxID=2587861 RepID=A0A5P9D2N7_9HYPH)

HSP 1 Score: 55.8 bits (133), Expect = 6.210e-7
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:   94 IAELVTPLPVDDVRFRLKIVHERHPMLHARVEDRDRPWWVCDVPFESISVSTREMGADFDLERLY 288
            +A+   P  V  +R  L+ +H RHPM+ AR+E +    WV DVPFE   ++    G  FD+E  Y
Sbjct:    1 MAKFDVPPTVSRLRSALRQIHNRHPMMRARIEGQTSRDWVVDVPFEKTEIAVHPAGEAFDVEAFY 65
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114959.3104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7D5MTH8_9PROT5.380e-3159.38Uncharacterized protein n=1 Tax=Defluviicoccus sp.... [more]
A0A5P9D2N7_9HYPH6.210e-738.46Condensation domain protein n=2 Tax=Labrenzia sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114959contigM-pyrifera_M_contig114959:1..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.274025-CDS-M-pyrifera_M_contig114959:0..2971622815665.274025-CDS-M-pyrifera_M_contig114959:0..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114959 1..297 -
1692277511.6429493-CDS-M-pyrifera_M_contig114959:0..2971692277511.6429493-CDS-M-pyrifera_M_contig114959:0..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114959 1..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114959.3104.1prot_M-pyrifera_M_contig114959.3104.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114959 1..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114959.3104.1

>prot_M-pyrifera_M_contig114959.3104.1 ID=prot_M-pyrifera_M_contig114959.3104.1|Name=mRNA_M-pyrifera_M_contig114959.3104.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MQDVVERPLGPQEAMFTELVRRSSGGVQLVTIAELVTPLPVDDVRFRLKI
VHERHPMLHARVEDRDRPWWVCDVPFESISVSTREMGADFDLERLYAAE
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mRNA from alignment at M-pyrifera_M_contig114959:1..297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114959.3104.1 ID=mRNA_M-pyrifera_M_contig114959.3104.1|Name=mRNA_M-pyrifera_M_contig114959.3104.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig114959:1..297- (Macrocystis pyrifera P11B4 male)
ATGCAAGACGTGGTGGAACGCCCGCTCGGCCCGCAGGAAGCGATGTTCAC
CGAACTTGTCCGGCGGTCCAGTGGCGGTGTTCAACTGGTCACGATTGCCG
AGCTGGTCACCCCTCTTCCTGTCGACGACGTCCGGTTCCGCCTGAAGATC
GTCCACGAGCGGCACCCCATGTTGCACGCCCGTGTTGAGGATCGCGATCG
GCCGTGGTGGGTCTGCGACGTCCCGTTTGAGTCCATTTCCGTCTCGACGC
GGGAAATGGGCGCCGACTTTGATCTCGAACGTCTTTATGCGGCCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114959:1..297-

>mRNA_M-pyrifera_M_contig114959.3104.1 ID=mRNA_M-pyrifera_M_contig114959.3104.1|Name=mRNA_M-pyrifera_M_contig114959.3104.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig114959:1..297- (Macrocystis pyrifera P11B4 male)
ATGCAAGACGTGGTGGAACGCCCGCTCGGCCCGCAGGAAGCGATGTTCAC
CGAACTTGTCCGGCGGTCCAGTGGCGGTGTTCAACTGGTCACGATTGCCG
AGCTGGTCACCCCTCTTCCTGTCGACGACGTCCGGTTCCGCCTGAAGATC
GTCCACGAGCGGCACCCCATGTTGCACGCCCGTGTTGAGGATCGCGATCG
GCCGTGGTGGGTCTGCGACGTCCCGTTTGAGTCCATTTCCGTCTCGACGC
GGGAAATGGGCGCCGACTTTGATCTCGAACGTCTTTATGCGGCCGAAATG
CAAGACGTGGTGGAACGCCCGCTCGGCCCGCAGGAAGCGATGTTCACCGA
ACTTGTCCGGCGGTCCAGTGGCGGTGTTCAACTGGTCACGATTGCCGAGC
TGGTCACCCCTCTTCCTGTCGACGACGTCCGGTTCCGCCTGAAGATCGTC
CACGAGCGGCACCCCATGTTGCACGCCCGTGTTGAGGATCGCGATCGGCC
GTGGTGGGTCTGCGACGTCCCGTTTGAGTCCATTTCCGTCTCGACGCGGG
AAATGGGCGCCGACTTTGATCTCGAACGTCTTTATGCGGCCGAA
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