mRNA_M-pyrifera_M_contig11490.3097.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11490.3097.1
Unique NamemRNA_M-pyrifera_M_contig11490.3097.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11490.3097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11490contigM-pyrifera_M_contig11490:4939..5293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.8967414-CDS-M-pyrifera_M_contig11490:4938..52561622815664.8967414-CDS-M-pyrifera_M_contig11490:4938..5256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11490 4939..5256 +
1692277511.459543-CDS-M-pyrifera_M_contig11490:4938..52561692277511.459543-CDS-M-pyrifera_M_contig11490:4938..5256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11490 4939..5256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.9110603-UTR-M-pyrifera_M_contig11490:5256..52931622815664.9110603-UTR-M-pyrifera_M_contig11490:5256..5293Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11490 5257..5293 +
1692277511.4709904-UTR-M-pyrifera_M_contig11490:5256..52931692277511.4709904-UTR-M-pyrifera_M_contig11490:5256..5293Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11490 5257..5293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11490.3097.1prot_M-pyrifera_M_contig11490.3097.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11490 4939..5256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11490.3097.1

>prot_M-pyrifera_M_contig11490.3097.1 ID=prot_M-pyrifera_M_contig11490.3097.1|Name=mRNA_M-pyrifera_M_contig11490.3097.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MTKFLDPEPFLYDCRILRPPKVGEHENAHDPFPPISRKSSKAAGETPSHA
NRPWETRSLRLCQGLSWPRYSGSSACSQGFDQLLARDDFLFGGNIETSPL
IDFTV*
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mRNA from alignment at M-pyrifera_M_contig11490:4939..5293+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11490.3097.1 ID=mRNA_M-pyrifera_M_contig11490.3097.1|Name=mRNA_M-pyrifera_M_contig11490.3097.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=355bp|location=Sequence derived from alignment at M-pyrifera_M_contig11490:4939..5293+ (Macrocystis pyrifera P11B4 male)
ATGACCAAGTTCCTTGACCCGGAGCCGTTTTTATACGACTGTCGCATTCT
ACGACCACCCAAGGTTGGCGAACACGAAAACGCCCACGACCCCTTTCCCC
CCATATCGCGCAAGTCTTCAAAAGCAGCAGGGGAAACCCCCTCGCATGCA
AATCGGCCATGGGAGACCCGGTCTCTTCGGTTGTGCCAAGGCCTCTCCTG
GCCTCGTTATTCTGGTTCTAGTGCATGTAGTCAAGGTTTCGATCAACTCC
TTGCACGCGATGATTTCCTTTTCGGCGGCAACATTGAAACTTCGCCATTG
ATAGACTTTACCGTATAATACGTGACATTGATTAAAAAAAATAAAGAAAA
TAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11490:4939..5293+

>mRNA_M-pyrifera_M_contig11490.3097.1 ID=mRNA_M-pyrifera_M_contig11490.3097.1|Name=mRNA_M-pyrifera_M_contig11490.3097.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig11490:4939..5293+ (Macrocystis pyrifera P11B4 male)
ATGACCAAGTTCCTTGACCCGGAGCCGTTTTTATACGACTGTCGCATTCT
ACGACCACCCAAGGTTGGCGAACACGAAAACGCCCACGACCCCTTTCCCC
CCATATCGCGCAAGTCTTCAAAAGCAGCAGGGGAAACCCCCTCGCATGCA
AATCGGCCATGGGAGACCCGGTCTCTTCGGTTGTGCCAAGGCCTCTCCTG
GCCTCGTTATTCTGGTTCTAGTGCATGTAGTCAAGGTTTCGATCAACTCC
TTGCACGCGATGATTTCCTTTTCGGCGGCAACATTGAAACTTCGCCATTG
ATAGACTTTACCGTATAAATGACCAAGTTCCTTGACCCGGAGCCGTTTTT
ATACGACTGTCGCATTCTACGACCACCCAAGGTTGGCGAACACGAAAACG
CCCACGACCCCTTTCCCCCCATATCGCGCAAGTCTTCAAAAGCAGCAGGG
GAAACCCCCTCGCATGCAAATCGGCCATGGGAGACCCGGTCTCTTCGGTT
GTGCCAAGGCCTCTCCTGGCCTCGTTATTCTGGTTCTAGTGCATGTAGTC
AAGGTTTCGATCAACTCCTTGCACGCGATGATTTCCTTTTCGGCGGCAAC
ATTGAAACTTCGCCATTGATAGACTTTACCGTATAA
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