mRNA_M-pyrifera_M_contig114868.3094.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114868.3094.1
Unique NamemRNA_M-pyrifera_M_contig114868.3094.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: A0A7S1GAP5_9STRA (Calmodulin n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAP5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.940e-30
Identity = 65/136 (47.79%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVMKT 408
            + +F  FD SG+G ID++ELG +LRALG   TEAEV D++A VDVDG+G +DF EFL ++ G L D D   E+E +F A D D  DGK+SA DL A AE L   L      +M+ EAD +G G  S    + +M T
Sbjct:   14 KEIFHLFDFSGEGRIDSKELGTMLRALGQSPTEAEVQDIIAEVDVDGTGKLDFEEFLAMVAGRLKDTDIVGEVEASFDAFDVDG-DGKVSAEDLRAYAEKLGEKLPMDDVREMVGEADLDGDGMISKDSFKRLMVT 148          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: B0D6G1_LACBS (Calmodulin n=2 Tax=Laccaria TaxID=29882 RepID=B0D6G1_LACBS)

HSP 1 Score: 107 bits (266), Expect = 5.880e-27
Identity = 57/134 (42.54%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVM 402
            R  FS FD  GDG I A+ELG+++R+LG + TEAE+ D+V  VD DG+G++DF EFL ++     D++ E+E+ +AF   D D   G++S S+L     SL   LT+ +  +MIREAD +G G   +++ Q +M
Sbjct:   13 REAFSLFDKDGDGTITAKELGIVMRSLGQNPTEAELQDMVNEVDKDGNGTIDFEEFLDMMSRNAVDENAEEEMRQAFLVFDKDGS-GQISKSELKQVMRSLGEYLTDQEVEEMIREADGDGDGEIDFQEFQRMM 145          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: A0A6G1BWR0_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BWR0_9ORYZ)

HSP 1 Score: 107 bits (268), Expect = 7.740e-27
Identity = 57/134 (42.54%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVM 402
            +  FS FD  GDG I  +ELG ++R LG + TEAE+ D+++ VD DGSG++DF EFL L+   + DKD E+EL EAF   D D ++G +SA++L     ++   LT+ +  +MI EAD +G G  +Y++    M
Sbjct:   14 KEAFSLFDKDGDGSITTKELGTVMRTLGQNPTEAELQDMISEVDADGSGNIDFQEFLGLMARKMKDKDSEEELREAFRVFDKD-QNGFISAAELRQVMANIGERLTDEEVGEMILEADVDGDGQINYEEFVKCM 146          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: D8S2X6_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S2X6_SELML)

HSP 1 Score: 106 bits (265), Expect = 8.560e-27
Identity = 57/134 (42.54%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVM 402
            +  FS FD  GDG I  +ELG ++R+LG + TEAE+ D++  +D DGSG+VDF EFL+L+   + D D E+EL+EAF   D + ++G +SA++L     +L   LT+ +  +MIREA+ +G G  +Y+D   +M
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEIDADGSGTVDFPEFLNLMARKMKDTDSEEELKEAFRVFDKE-QNGFISAAELRHVMTNLGEKLTDDEVDEMIREANVDGDGQINYEDFVKMM 146          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: A0A6J0JA04_9PASS (calmodulin, striated muscle n=8 Tax=Neognathae TaxID=8825 RepID=A0A6J0JA04_9PASS)

HSP 1 Score: 106 bits (265), Expect = 8.560e-27
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVM 402
            +  FS FD  GDG I  RELG ++R+LG + TEAE+ D+V  VD DGSG+VDF EFL L+   + D D E+E+ EAF   D D   G +SA++L     +L   LT+ +  +MIREAD    G  +Y++   +M
Sbjct:   14 KEAFSLFDRDGDGSITTRELGTVMRSLGQNPTEAELRDMVGEVDTDGSGTVDFPEFLSLMARRMRDTDGEEEIREAFRVFDKDGN-GYISAAELRHVMTNLGEKLTDEEVDEMIREADCNNDGQVNYEEFVRMM 146          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: A0A6P7UZG6_IXOSC (Calmodulin n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7UZG6_IXOSC)

HSP 1 Score: 106 bits (264), Expect = 1.150e-26
Identity = 57/134 (42.54%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVM 402
            R  F+ FD  GDG I  +ELG ++RALG + TEAE+ D++A VD+DGSG++DF EFL ++       D E E+ EAF   D D   G ++A++L     +L   LT+ +  +MIREAD +G G  +Y++  A+M
Sbjct:   12 REAFALFDKDGDGVISTKELGTVMRALGQNPTEAELKDMIAEVDIDGSGNIDFPEFLAMMTKKTRTVDSEDEIREAFKVFDRDGN-GFITAAELRHVMTTLGEKLTDEEVDEMIREADVDGDGQINYEEFVALM 144          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: A0A7L1YDB9_9PASS (CALMS protein (Fragment) n=8 Tax=Neognathae TaxID=8825 RepID=A0A7L1YDB9_9PASS)

HSP 1 Score: 106 bits (264), Expect = 1.210e-26
Identity = 58/134 (43.28%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVM 402
            +  FS FD  GDG I  RELG ++R+LG + TEAE+  +V  VD DGSG++DFAEFL L+   + D D E+E+ EAF   D D   G +SA++L     +L   LT+ +  +MIREAD    G  +Y++   +M
Sbjct:   14 KEAFSLFDRDGDGSISTRELGTVMRSLGQNPTEAELQGMVGEVDADGSGAIDFAEFLSLMARKMRDTDGEEEIREAFRVFDKDGN-GYISAAELRHVMTNLGEKLTDEEVDEMIREADCNNDGQVNYEEFVRMM 146          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: A0A2P2IX10_RHIMU (Caltractin n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2IX10_RHIMU)

HSP 1 Score: 106 bits (265), Expect = 1.470e-26
Identity = 54/135 (40.00%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVMK 405
            R  F  FD  G G+IDAREL V +RALG ++TE ++  ++A VD DGSG++DF EF+H++   + ++D ++EL +AF  +D D K+G++SA+D+   A  L   LT+ +  +M+ EAD +  G    ++   +MK
Sbjct:   30 REAFDLFDTDGSGNIDARELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDFDEFVHMMTAKIGERDTKEELMKAFHIIDHD-KNGRISANDIKQIARELGETLTDREIEEMVEEADRDRDGEVGVEEFMRMMK 163          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: A0A8C3M4E1_CHRPC (Calmodulin like 3 n=4 Tax=Neognathae TaxID=8825 RepID=A0A8C3M4E1_CHRPC)

HSP 1 Score: 105 bits (263), Expect = 1.720e-26
Identity = 57/134 (42.54%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVM 402
            +  FS FD  GDG I  +ELG ++R+LG + TEAE+ D+V  VDVDGSG++DF EFL L+   + D D E+E+ EAF   D D   G +SA++L     +L   LT+ +  +MI+EAD    G  +Y++   +M
Sbjct:   14 KEAFSLFDRDGDGCITTKELGTVMRSLGQNPTEAELQDMVGEVDVDGSGTIDFPEFLSLMARKMRDSDSEEEIREAFRVFDKDGN-GYISAAELRHVMTNLGEKLTDEEVDEMIKEADCNNDGQVNYEEFVRMM 146          
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Match: A0A8C4XZF4_9SAUR (Calmodulin like 3 n=3 Tax=Testudinoidea TaxID=8486 RepID=A0A8C4XZF4_9SAUR)

HSP 1 Score: 105 bits (261), Expect = 3.440e-26
Identity = 56/134 (41.79%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGSVDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAESLQRPLTEAQAADMIREADTEGKGFASYKDLQAVM 402
            +  FS FD  GDG I   ELG ++R+LG + TEAE+ D++  +D DGSG+VDF EFL ++   + D D E+E+ EAF   D D K+G +SA++L     +L   LT+ +  +MIREAD+   G  +Y++   +M
Sbjct:   14 KEAFSLFDKDGDGTITTSELGTVMRSLGQNPTEAELQDMIGELDADGSGTVDFPEFLSMMARKMRDTDSEEEIREAFRVFDRD-KNGYISAAELRHVMTNLGEKLTDEEVDEMIREADSNSDGQVNYEEFVRMM 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114868.3094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GAP5_9STRA3.940e-3047.79Calmodulin n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1... [more]
B0D6G1_LACBS5.880e-2742.54Calmodulin n=2 Tax=Laccaria TaxID=29882 RepID=B0D6... [more]
A0A6G1BWR0_9ORYZ7.740e-2742.54Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
D8S2X6_SELML8.560e-2742.54Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
A0A6J0JA04_9PASS8.560e-2744.03calmodulin, striated muscle n=8 Tax=Neognathae Tax... [more]
A0A6P7UZG6_IXOSC1.150e-2642.54Calmodulin n=1 Tax=Ixodes scapularis TaxID=6945 Re... [more]
A0A7L1YDB9_9PASS1.210e-2643.28CALMS protein (Fragment) n=8 Tax=Neognathae TaxID=... [more]
A0A2P2IX10_RHIMU1.470e-2640.00Caltractin n=1 Tax=Rhizophora mucronata TaxID=6114... [more]
A0A8C3M4E1_CHRPC1.720e-2642.54Calmodulin like 3 n=4 Tax=Neognathae TaxID=8825 Re... [more]
A0A8C4XZF4_9SAUR3.440e-2641.79Calmodulin like 3 n=3 Tax=Testudinoidea TaxID=8486... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114868contigM-pyrifera_M_contig114868:9..422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score111.3
Seed ortholog evalue3.6e-22
Seed eggNOG ortholog42345.XP_008810798.1
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2 ). Among the enzymes to be stimulated by the calmodulin-Ca(2 ) complex are a number of protein kinases and phosphatases
EggNOG OGs37K5B@33090,3GCAR@35493,COG5126@1,KOG0027@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.7457154-CDS-M-pyrifera_M_contig114868:8..4221622815664.7457154-CDS-M-pyrifera_M_contig114868:8..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114868 9..422 +
1692277511.3997302-CDS-M-pyrifera_M_contig114868:8..4221692277511.3997302-CDS-M-pyrifera_M_contig114868:8..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114868 9..422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114868.3094.1prot_M-pyrifera_M_contig114868.3094.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114868 9..422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114868.3094.1

>prot_M-pyrifera_M_contig114868.3094.1 ID=prot_M-pyrifera_M_contig114868.3094.1|Name=mRNA_M-pyrifera_M_contig114868.3094.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
RRLFSFFDLSGDGHIDARELGVILRALGMDVTEAEVADLVARVDVDGSGS
VDFAEFLHLIVGPLADKDPEKELEEAFAALDADSKDGKLSASDLVAAAES
LQRPLTEAQAADMIREADTEGKGFASYKDLQAVMKTN*
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mRNA from alignment at M-pyrifera_M_contig114868:9..422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114868.3094.1 ID=mRNA_M-pyrifera_M_contig114868.3094.1|Name=mRNA_M-pyrifera_M_contig114868.3094.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig114868:9..422+ (Macrocystis pyrifera P11B4 male)
CGGCGCTTGTTTTCTTTCTTCGACCTTTCCGGGGACGGGCACATCGATGC GCGGGAGCTGGGGGTGATTCTGCGCGCGTTGGGCATGGACGTGACGGAAG CAGAGGTGGCGGACCTTGTGGCTCGCGTGGATGTGGACGGTTCTGGGAGC GTGGACTTTGCAGAGTTTTTGCACCTGATTGTGGGGCCTCTTGCGGATAA AGATCCTGAAAAGGAGCTGGAGGAGGCGTTTGCCGCTTTGGACGCCGACA GTAAAGACGGGAAACTCTCGGCAAGTGACCTCGTTGCTGCAGCAGAATCC CTACAACGGCCTCTTACAGAGGCACAAGCGGCCGATATGATCAGGGAAGC AGACACAGAAGGAAAAGGGTTTGCGAGCTACAAGGACCTGCAGGCCGTCA TGAAAACGAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114868:9..422+

>mRNA_M-pyrifera_M_contig114868.3094.1 ID=mRNA_M-pyrifera_M_contig114868.3094.1|Name=mRNA_M-pyrifera_M_contig114868.3094.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig114868:9..422+ (Macrocystis pyrifera P11B4 male)
CGGCGCTTGTTTTCTTTCTTCGACCTTTCCGGGGACGGGCACATCGATGC
GCGGGAGCTGGGGGTGATTCTGCGCGCGTTGGGCATGGACGTGACGGAAG
CAGAGGTGGCGGACCTTGTGGCTCGCGTGGATGTGGACGGTTCTGGGAGC
GTGGACTTTGCAGAGTTTTTGCACCTGATTGTGGGGCCTCTTGCGGATAA
AGATCCTGAAAAGGAGCTGGAGGAGGCGTTTGCCGCTTTGGACGCCGACA
GTAAAGACGGGAAACTCTCGGCAAGTGACCTCGTTGCTGCAGCAGAATCC
CTACAACGGCCTCTTACAGAGGCACAAGCGGCCGATATGATCAGGGAAGC
AGACACAGAAGGAAAAGGGTTTGCGAGCTACAAGGACCTGCAGGCCGTCA
TGAAAACGAACTGACGGCGCTTGTTTTCTTTCTTCGACCTTTCCGGGGAC
GGGCACATCGATGCGCGGGAGCTGGGGGTGATTCTGCGCGCGTTGGGCAT
GGACGTGACGGAAGCAGAGGTGGCGGACCTTGTGGCTCGCGTGGATGTGG
ACGGTTCTGGGAGCGTGGACTTTGCAGAGTTTTTGCACCTGATTGTGGGG
CCTCTTGCGGATAAAGATCCTGAAAAGGAGCTGGAGGAGGCGTTTGCCGC
TTTGGACGCCGACAGTAAAGACGGGAAACTCTCGGCAAGTGACCTCGTTG
CTGCAGCAGAATCCCTACAACGGCCTCTTACAGAGGCACAAGCGGCCGAT
ATGATCAGGGAAGCAGACACAGAAGGAAAAGGGTTTGCGAGCTACAAGGA
CCTGCAGGCCGTCATGAAAACGAACTGA
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