mRNA_M-pyrifera_M_contig114867.3093.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114867.3093.1
Unique NamemRNA_M-pyrifera_M_contig114867.3093.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114867.3093.1 vs. uniprot
Match: K5D7G7_RHOBT (Uncharacterized protein n=1 Tax=Rhodopirellula baltica SH28 TaxID=993517 RepID=K5D7G7_RHOBT)

HSP 1 Score: 54.7 bits (130), Expect = 9.340e-9
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 PNPTAKTHHKPIPSRVKNPAHSNSTLQRTRQAVA 102
            PNPTAKTHHKPIPSR KNP HSNST  +TR AV+
Sbjct:   22 PNPTAKTHHKPIPSRGKNPPHSNSTKPQTRLAVS 55
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114867.3093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K5D7G7_RHOBT9.340e-979.41Uncharacterized protein n=1 Tax=Rhodopirellula bal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114867contigM-pyrifera_M_contig114867:44..145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.7162774-CDS-M-pyrifera_M_contig114867:43..1451622815664.7162774-CDS-M-pyrifera_M_contig114867:43..145Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114867 44..145 +
1692277511.3820357-CDS-M-pyrifera_M_contig114867:43..1451692277511.3820357-CDS-M-pyrifera_M_contig114867:43..145Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114867 44..145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114867.3093.1prot_M-pyrifera_M_contig114867.3093.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114867 44..145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114867.3093.1

>prot_M-pyrifera_M_contig114867.3093.1 ID=prot_M-pyrifera_M_contig114867.3093.1|Name=mRNA_M-pyrifera_M_contig114867.3093.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=34bp
PNPTAKTHHKPIPSRVKNPAHSNSTLQRTRQAVA
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mRNA from alignment at M-pyrifera_M_contig114867:44..145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114867.3093.1 ID=mRNA_M-pyrifera_M_contig114867.3093.1|Name=mRNA_M-pyrifera_M_contig114867.3093.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=102bp|location=Sequence derived from alignment at M-pyrifera_M_contig114867:44..145+ (Macrocystis pyrifera P11B4 male)
CCCAACCCAACCGCCAAAACGCATCACAAACCAATCCCATCACGAGTTAA
GAATCCGGCGCATTCTAACTCAACCCTTCAGCGAACGCGGCAAGCCGTCG
CC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114867:44..145+

>mRNA_M-pyrifera_M_contig114867.3093.1 ID=mRNA_M-pyrifera_M_contig114867.3093.1|Name=mRNA_M-pyrifera_M_contig114867.3093.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig114867:44..145+ (Macrocystis pyrifera P11B4 male)
CCCAACCCAACCGCCAAAACGCATCACAAACCAATCCCATCACGAGTTAA
GAATCCGGCGCATTCTAACTCAACCCTTCAGCGAACGCGGCAAGCCGTCG
CCCCCAACCCAACCGCCAAAACGCATCACAAACCAATCCCATCACGAGTT
AAGAATCCGGCGCATTCTAACTCAACCCTTCAGCGAACGCGGCAAGCCGT
CGCC
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