mRNA_M-pyrifera_M_contig114861.3091.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114861.3091.1
Unique NamemRNA_M-pyrifera_M_contig114861.3091.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A7S1CIG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIG4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.160e-26
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 1
Query:   10 LERKLQEQIQKTEEMAARKQREMRERSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLMANQS---RRASAID----DEGEXXXXXXXXXXXTPAVS---------SGSKGITALWSHDEFMKRLYSMREMYQAFMENSR 387
            LE+KL+EQI++TE +A RKQREMRERSLLDEKLLKTIPLVNEANAI+DE+G+++ F VKLMANQS   R    I+    DEG XXXXXXXXXX    +          SG +   ++W +D+FM RLY MREMY A++E  R
Sbjct:  709 LEQKLKEQIKETERVARRKQREMRERSLLDEKLLKTIPLVNEANAISDELGKKMVFSVKLMANQSAALREVKKIEEEDSDEGAXXXXXXXXXXDKAVLDTEVFVRVEYSGEERPVSMWVYDKFMNRLYMMREMYTAWVEVDR 850          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A5A8DA66_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DA66_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 4.680e-20
Identity = 51/104 (49.04%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   82 ERSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLMANQSRR--ASAIDDEGEXXXXXXXXXXXTPAVSSGSKGITALWSHDEFMKRLYSMREMYQAFMENSR 387
            ERSLLDEKLLKTIP+VNEANAIADE+ +    E++LMANQ +       D++GE                    G+  LW +D+FM+RLY+MREMYQAF+   R
Sbjct:  707 ERSLLDEKLLKTIPMVNEANAIADELAKNALLELRLMANQRKGLWTGEEDEDGEVAPEPLDTEVYVRVAPKEGSGLEGLWHYDDFMERLYAMREMYQAFVSAGR 810          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A5A8D7S8_CAFRO (Pantoate--beta-alanine ligase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D7S8_CAFRO)

HSP 1 Score: 92.8 bits (229), Expect = 2.210e-19
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   82 ERSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLMANQSRR--ASAIDDEGEXXXXXXXXXXXTPAVSSGSKGITALWSHDEFMKRLYSMREMYQAFMENSR 387
            ERSLLDEKLLKTIP+VNEANA ADE+ +    E++LMANQ +       D++GE                    G+  LW +D+FM+RLY+MREMYQAF+   R
Sbjct:  361 ERSLLDEKLLKTIPMVNEANATADELAKNALLELRLMANQRKGLWTGEEDEDGEVAPEPLDTEVYVRVAPKEGSGLEGLWHYDDFMERLYAMREMYQAFVSAGR 464          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A812MDA5_9DINO (Kif1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MDA5_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 4.050e-19
Identity = 55/106 (51.89%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   85 RSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLMANQSR----RASAIDDEGEXXXXXXXXXXXTPAV-SSGSKGITALWSHDEFMKRLYSMREMYQAFMENSR 387
            RS+LDEKLLKTIPLVNEANA+ADE+G++  FEVKLM N  +     A+  DDE +              V   GS+   A W +D+FM RLY MREMYQ F  NSR
Sbjct:  639 RSVLDEKLLKTIPLVNEANAMADEMGKKDVFEVKLMPNMEKDAVYEATEFDDEEDVAQKEAMDTEVYVRVHQKGSEAPPAQWHYDKFMNRLYIMREMYQQFQSNSR 744          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A5A8BZD2_CAFRO (FHA domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BZD2_CAFRO)

HSP 1 Score: 83.2 bits (204), Expect = 4.690e-16
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   22 LQEQIQKTEEMAARKQREMRERSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLMANQSRR--ASAIDDEGEXXXXXXXXXXXTPAVSSGSKGITALWSHDEFMKRLYSMREMYQAFMENSR 387
            LQEQ    +  A  +Q  M E +   ++LLKTIP+VNEANA ADE+ +    E++LMANQ +       D++GE                    G+  LW +D+FM+RLY+MREMYQAF+   R
Sbjct:  308 LQEQSAAGDREARERQEAMLEEARKQQQLLKTIPMVNEANATADELAKNALLELRLMANQRKGLWTGEEDEDGEVAPEPLDTEVYVRVAPKEGSGLEGLWHYDDFMERLYAMREMYQAFVSAGR 431          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A7S4DCJ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCJ5_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 4.500e-15
Identity = 50/126 (39.68%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    7 ELERKLQEQIQKTEEMAARKQREMRERSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLMANQSRRASAIDDEGEXXXXXXXXXXXTPAVSSGSKGITALWSHDEFMKRLYSMREMYQAFMENS 384
            ELE +LQ+Q+ + E+++ R++RE+   SLLDE LLK +PLV+EAN I+ E+ + + F +KL++ ++ R SA+  E E             A  S S     +W+H++F  R+Y MREMYQ + EN+
Sbjct:   32 ELEERLQKQMLENEKLSQRQERELMXXSLLDEALLKLLPLVHEANLISQELNKGMTFAIKLIS-KAVRVSALTGEEEMKTEIVVMVTHAEADKSQS-----IWNHEKFTNRIYIMREMYQQWSENN 151          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A2D4BNN5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNN5_PYTIN)

HSP 1 Score: 77.4 bits (189), Expect = 4.480e-14
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 QEELERKLQEQIQKTEEMAARKQREMRERSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLMA--NQSRRASAID---DEGEXXXXXXXXXXXTPAVSSGSKGI--TALWSHDEFMKRLYSMREMYQAFMENSR 387
            Q+ELE  LQ+Q+++   ++ +K+RE  ER+  D++LL++IPLVNEAN IADE+ R  RF +KL+    ++   + +D   D+ E              V+    G   + LW  D+F   LY+MRE+YQ F+EN+R
Sbjct:   85 QKELEESLQKQMREASLLSRQKERERLERTKFDDQLLQSIPLVNEANTIADELQRNTRFAIKLLTIGPEASVLACLDNAGDDAEIAIGFGISAELKVQVTFQEAGTFRSVLWPIDQFYANLYAMRELYQTFIENNR 220          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A813AHQ0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AHQ0_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 1.580e-12
Identity = 38/57 (66.67%), Postives = 52/57 (91.23%), Query Frame = 1
Query:    7 ELERKLQEQIQKTEEMAARKQREMRERSLLDEKLLKTIPLVNEANAIADEIGRRLRF 177
            ELE KL++Q+++T+ +AA K+REMR+RSLLDEKLLKTIPLVNEANAI++E+G+ + F
Sbjct:  143 ELEAKLKKQMEETKALAANKEREMRQRSLLDEKLLKTIPLVNEANAISEELGKGMSF 199          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A662XXW7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXW7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.650e-11
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 QEELERKLQEQIQKTEEMAARKQREMRERSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLM------ANQSRRASAIDDEGEXXXXXXXXXXXTPAVSSGSKGI--TALWSHDEFMKRLYSMREMYQAFMENSR 387
            Q+ELE  L +Q+++ + +  +K RE  ER+  D++LL TIPLVNEAN+IADE+ ++  F ++L+      A  S  + +++DE E              V+    G     +W  D+F   LY+MREMYQAF+E++R
Sbjct:  378 QKELEVSLHKQMREAQVLGHQKDRERMERAKFDDQLLHTIPLVNEANSIADELQKQTFFTLRLITSGPPPAALSSTSESLEDE-EVTISHGIGAELKVEVNFQEAGTFRCVMWDVDQFNGNLYAMREMYQAFIEHNR 513          
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Match: A0A662WUP0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUP0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.700e-11
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    1 QEELERKLQEQIQKTEEMAARKQREMRERSLLDEKLLKTIPLVNEANAIADEIGRRLRFEVKLM------ANQSRRASAIDDEGEXXXXXXXXXXXTPAVSSGSKGI--TALWSHDEFMKRLYSMREMYQAFMENSR 387
            Q+ELE  L +Q+++ + +  +K RE  ER+  D++LL TIPLVNEAN+IADE+ ++  F ++L+      A  S    + +DE E              V+    G     +W  D+F   LY+MREMYQAF+E++R
Sbjct:  357 QKELEVSLHKQMREAQVLGHQKDRERMERAKFDDQLLHTIPLVNEANSIADELQKQTFFTLRLITSGPPPAALSSTCESFEDE-EVAISHGIGAELKVEVNFQEAGTFRCVMWDVDQFNGNLYAMREMYQAFIEHNR 492          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114861.3091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CIG4_9STRA1.160e-2658.45Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8DA66_CAFRO4.680e-2049.04Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8D7S8_CAFRO2.210e-1948.08Pantoate--beta-alanine ligase n=4 Tax=Cafeteria ro... [more]
A0A812MDA5_9DINO4.050e-1951.89Kif1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A5A8BZD2_CAFRO4.690e-1640.32FHA domain-containing protein n=1 Tax=Cafeteria ro... [more]
A0A7S4DCJ5_HETAK4.500e-1539.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4BNN5_PYTIN4.480e-1438.24Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A813AHQ0_9DINO1.580e-1266.67Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A662XXW7_9STRA2.650e-1137.23Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662WUP0_9STRA6.700e-1137.23Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114861contigM-pyrifera_M_contig114861:3..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog115417.EPrPW00000014877
KEGG koko:K10392
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006810,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0008289,GO:0008574,GO:0009987,GO:0010970,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030705,GO:0032991,GO:0035091,GO:0042623,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0046907,GO:0046983,GO:0047496,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0072383,GO:0072384,GO:0072386,GO:0099111,GO:0099518,GO:1901981,GO:1902936,GO:1990939
EggNOG free text desc.Kinesin. Source PGD
EggNOG OGs1MG1K@121069,COG5059@1,KOG0245@2759
COG Functional cat.Z
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.6260443-CDS-M-pyrifera_M_contig114861:2..2241622815664.6260443-CDS-M-pyrifera_M_contig114861:2..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114861 3..224 +
1692277511.346083-CDS-M-pyrifera_M_contig114861:2..2241692277511.346083-CDS-M-pyrifera_M_contig114861:2..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114861 3..224 +
1622815664.645396-CDS-M-pyrifera_M_contig114861:377..5421622815664.645396-CDS-M-pyrifera_M_contig114861:377..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114861 378..542 +
1692277511.358703-CDS-M-pyrifera_M_contig114861:377..5421692277511.358703-CDS-M-pyrifera_M_contig114861:377..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114861 378..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114861.3091.1prot_M-pyrifera_M_contig114861.3091.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114861 3..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114861.3091.1

>prot_M-pyrifera_M_contig114861.3091.1 ID=prot_M-pyrifera_M_contig114861.3091.1|Name=mRNA_M-pyrifera_M_contig114861.3091.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
QEELERKLQEQIQKTEEMAARKQREMRERSLLDEKLLKTIPLVNEANAIA
DEIGRRLRFEVKLMANQSRRASAIDDEGEGGGAAAGGGAATPAVSSGSKG
ITALWSHDEFMKRLYSMREMYQAFMENSR
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mRNA from alignment at M-pyrifera_M_contig114861:3..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114861.3091.1 ID=mRNA_M-pyrifera_M_contig114861.3091.1|Name=mRNA_M-pyrifera_M_contig114861.3091.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig114861:3..542+ (Macrocystis pyrifera P11B4 male)
CAAGAAGAATTGGAACGCAAGTTGCAGGAACAAATCCAAAAGACTGAAGA GATGGCAGCACGGAAACAACGTGAAATGCGTGAACGATCTTTGCTTGATG AGAAGCTTCTCAAAACAATTCCACTTGTGAACGAAGCCAACGCGATTGCT GATGAAATTGGCCGTCGTTTGCGTTTTGAAGTCAAGTTGATGGCAAATCA ATCACGCCGTGCCTCTGCCATTGTTCCTGCCACCTCTTCCAAAGGTGGAG GTGCAGCAGGTGGTGGGGAGGAGGATGATGATGATGAGGATGATGATGAG GATGATGATGAGCCATCTCACAGTCATGCCGAGCAACTTGATACAGAAGT GTACATCCGTGTCACTCCAAAGGAGGATGATGAAGGTGAAGGTGGAGGAG CTGCTGCTGGTGGAGGTGCAGCAACTCCTGCAGTGAGTAGTGGAAGCAAG GGGATTACTGCATTGTGGTCTCATGATGAATTTATGAAGCGACTGTACTC GATGCGTGAAATGTATCAAGCATTTATGGAAAACTCTCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114861:3..542+

>mRNA_M-pyrifera_M_contig114861.3091.1 ID=mRNA_M-pyrifera_M_contig114861.3091.1|Name=mRNA_M-pyrifera_M_contig114861.3091.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig114861:3..542+ (Macrocystis pyrifera P11B4 male)
CAAGAAGAATTGGAACGCAAGTTGCAGGAACAAATCCAAAAGACTGAAGA
GATGGCAGCACGGAAACAACGTGAAATGCGTGAACGATCTTTGCTTGATG
AGAAGCTTCTCAAAACAATTCCACTTGTGAACGAAGCCAACGCGATTGCT
GATGAAATTGGCCGTCGTTTGCGTTTTGAAGTCAAGTTGATGGCAAATCA
ATCACGCCGTGCCTCTGCCATTCAAGAAGAATTGGAACGCAAGTTGCAGG
AACAAATCCAAAAGACTGAAGAGATGGCAGCACGGAAACAACGTGAAATG
CGTGAACGATCTTTGCTTGATGAGAAGCTTCTCAAAACAATTCCACTTGT
GAACGAAGCCAACGCGATTGCTGATGAAATTGGCCGTCGTTTGCGTTTTG
AAGTCAAGTTGATGGCAAATCAATCACGCCGTGCCTCTGCCATTGATGAT
GAAGGTGAAGGTGGAGGAGCTGCTGCTGGTGGAGGTGCAGCAACTCCTGC
AGTGAGTAGTGGAAGCAAGGGGATTACTGCATTGTGGTCTCATGATGAAT
TTATGAAGCGACTGTACTCGATGCGTGAAATGTATCAAGCATTTATGGAA
AACTCTCGTGATGATGAAGGTGAAGGTGGAGGAGCTGCTGCTGGTGGAGG
TGCAGCAACTCCTGCAGTGAGTAGTGGAAGCAAGGGGATTACTGCATTGT
GGTCTCATGATGAATTTATGAAGCGACTGTACTCGATGCGTGAAATGTAT
CAAGCATTTATGGAAAACTCTCGT
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