mRNA_M-pyrifera_M_contig114857.3089.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114857.3089.1
Unique NamemRNA_M-pyrifera_M_contig114857.3089.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig114857.3089.1 vs. uniprot
Match: UPI000462BF68 (ATP-binding protein n=1 Tax=Desulfotignum balticum TaxID=115781 RepID=UPI000462BF68)

HSP 1 Score: 50.8 bits (120), Expect = 1.210e-5
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    4 QDDYYLYCQAVFSSNDKQVCELKMQKQNGTVLDVSLESIAFEEDG--TQRSRTTLIDITMQK 183
            QD YY + + +  S  +Q+CEL+M+K +GT++DV LES  F       ++ RT +IDIT +K
Sbjct:  124 QDIYYGHLKDLAESKQRQICELRMKKSDGTLVDVQLESTVFPYQSWRPEQFRTVIIDITERK 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig114857.3089.1 vs. uniprot
Match: A0A2V5MW37_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5MW37_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 7.960e-5
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 AQDDYYLYCQAVFSSNDKQVCELKMQKQNGTVLDVSLESIA--FEEDGTQRSRTTLIDITMQKAA 189
            +QD  YL+ + VFS+ DKQ+CEL+M K +GT     LE++    E+   +R    L DIT +K A
Sbjct:  123 SQDTLYLHRRQVFSTGDKQICELRMLKTDGTKFIARLETVVERAEQGRPRRCLVMLSDITQEKQA 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114857.3089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000462BF681.210e-541.94ATP-binding protein n=1 Tax=Desulfotignum balticum... [more]
A0A2V5MW37_9BACT7.960e-541.54Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114857contigM-pyrifera_M_contig114857:15..221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.4882972-CDS-M-pyrifera_M_contig114857:14..2211622815664.4882972-CDS-M-pyrifera_M_contig114857:14..221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114857 15..221 +
1692277511.275208-CDS-M-pyrifera_M_contig114857:14..2211692277511.275208-CDS-M-pyrifera_M_contig114857:14..221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114857 15..221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114857.3089.1prot_M-pyrifera_M_contig114857.3089.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114857 15..221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114857.3089.1

>prot_M-pyrifera_M_contig114857.3089.1 ID=prot_M-pyrifera_M_contig114857.3089.1|Name=mRNA_M-pyrifera_M_contig114857.3089.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
AQDDYYLYCQAVFSSNDKQVCELKMQKQNGTVLDVSLESIAFEEDGTQRS
RTTLIDITMQKAAMSALRN
back to top

mRNA from alignment at M-pyrifera_M_contig114857:15..221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114857.3089.1 ID=mRNA_M-pyrifera_M_contig114857.3089.1|Name=mRNA_M-pyrifera_M_contig114857.3089.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig114857:15..221+ (Macrocystis pyrifera P11B4 male)
GCACAAGACGATTATTACTTGTACTGTCAGGCGGTTTTTTCCAGCAATGA
CAAGCAGGTATGCGAGCTGAAGATGCAAAAGCAGAACGGTACAGTCCTGG
ATGTATCGCTGGAAAGCATTGCCTTTGAAGAAGACGGAACGCAGCGCAGC
CGTACGACCCTGATTGATATCACAATGCAGAAAGCAGCCATGAGTGCGCT
GCGCAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114857:15..221+

>mRNA_M-pyrifera_M_contig114857.3089.1 ID=mRNA_M-pyrifera_M_contig114857.3089.1|Name=mRNA_M-pyrifera_M_contig114857.3089.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig114857:15..221+ (Macrocystis pyrifera P11B4 male)
GCACAAGACGATTATTACTTGTACTGTCAGGCGGTTTTTTCCAGCAATGA
CAAGCAGGTATGCGAGCTGAAGATGCAAAAGCAGAACGGTACAGTCCTGG
ATGTATCGCTGGAAAGCATTGCCTTTGAAGAAGACGGAACGCAGCGCAGC
CGTACGACCCTGATTGATATCACAATGCAGAAAGCAGCCATGAGTGCGCT
GCGCAACGCACAAGACGATTATTACTTGTACTGTCAGGCGGTTTTTTCCA
GCAATGACAAGCAGGTATGCGAGCTGAAGATGCAAAAGCAGAACGGTACA
GTCCTGGATGTATCGCTGGAAAGCATTGCCTTTGAAGAAGACGGAACGCA
GCGCAGCCGTACGACCCTGATTGATATCACAATGCAGAAAGCAGCCATGA
GTGCGCTGCGCAAC
back to top