mRNA_M-pyrifera_M_contig114821.3081.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114821.3081.1
Unique NamemRNA_M-pyrifera_M_contig114821.3081.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: L8HJR5_ACACA (Ribosome biogenesis protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJR5_ACACA)

HSP 1 Score: 167 bits (423), Expect = 9.050e-46
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            S VI+SLV HYT Q L  + GP+TV+SGKKRRLT  ECP D+ AM D+AKVADLVLLV+DAH+GFEMETFEFLN+LQ+HGFP++MGVLTH+DEFKS K     KKQ K RFW EI
Sbjct:   98 STVIRSLVHHYTGQNLTKINGPITVVSGKKRRLTFFECPNDMNAMLDIAKVADLVLLVVDAHFGFEMETFEFLNVLQVHGFPRIMGVLTHMDEFKSAKTLKNTKKQMKHRFWTEI 212
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: A0A7S3C8Q3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C8Q3_9CHLO)

HSP 1 Score: 155 bits (393), Expect = 9.320e-45
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            S VIKSLVKHY RQ +   KGP++VISGK RR+TL+ECP  L  M D +KVADLVLLVID ++GFEMETFEFLNLLQ+HGFPKVMGVLTHLD +KS+      KK  K RFW EI
Sbjct:  159 STVIKSLVKHYARQNISDTKGPISVISGKSRRITLIECPKTLTGMIDASKVADLVLLVIDGNFGFEMETFEFLNLLQVHGFPKVMGVLTHLDMYKSKDRLKKVKKGLKARFWNEI 273
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: A0A7S3YEJ2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEJ2_HETAK)

HSP 1 Score: 157 bits (396), Expect = 1.170e-44
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            S++I+SLVK YTRQ L  + GP+T++  KKRRLTL EC  DL+AM D+AK+ADLVLL++DA YGFEMETFEFLN+LQ+HGFPKVMGVLTHLD+ K+ KA S  KK  K RFW EI
Sbjct:   54 SSLIRSLVKLYTRQNLTEITGPITIVCNKKRRLTLFECTNDLSAMVDLAKIADLVLLMVDASYGFEMETFEFLNILQVHGFPKVMGVLTHLDKMKNNKALSKTKKALKHRFWTEI 168
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: A0A6A7GA06_9CRUS (Ribosome biogenesis protein BMS1 homolog (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA06_9CRUS)

HSP 1 Score: 164 bits (414), Expect = 1.480e-44
Identity = 79/115 (68.70%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            + +IKSLV+HYT  +L  VKGP+TV+SGK +RLT  ECP DL AM D+AKVADLVLL++D HYGFEMETFEFLN+ Q+HGFPK+MGVLTHLD+FKS+KA    KK+ K RFW EI
Sbjct:  115 TTLIKSLVRHYTNHSLTEVKGPITVVSGKSQRLTFFECPNDLNAMIDIAKVADLVLLLVDGHYGFEMETFEFLNIAQVHGFPKIMGVLTHLDQFKSQKALRMTKKKLKHRFWTEI 229
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: A0A4P9Y0H9_9FUNG (NUC121 domain-containing protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y0H9_9FUNG)

HSP 1 Score: 156 bits (395), Expect = 4.540e-44
Identity = 75/115 (65.22%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            S +IKSLVK YT+  L  ++GP+TV+SGKKRRLT +ECP D+ +M DV KVADL+LL++DA YGFEMETFEFLN+LQ HGFPK++GVLTHLD FK+  A +  KK+ K+RFW EI
Sbjct:   85 STLIKSLVKRYTKHNLSEIRGPITVVSGKKRRLTFIECPNDINSMMDVGKVADLILLLVDASYGFEMETFEFLNILQTHGFPKIIGVLTHLDRFKNGAALTATKKRLKQRFWTEI 199
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: A0A7S1G9T8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9T8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.760e-44
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            S +I+ LVKHYTR TL  ++GP+TV++GKKRR++  ECP DLAAM D+AKVADLVLL+IDA +GFEMETFEFLN+LQ+HGFPKVMGVLTHLD F+  K     KK  K RFW EI
Sbjct:   98 STLIRDLVKHYTRHTLTHIRGPVTVVTGKKRRVSFFECPNDLAAMIDLAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPKVMGVLTHLDGFQQNKRLKKTKKTLKNRFWTEI 212
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: I1CTC2_RHIO9 (Bms1-type G domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CTC2_RHIO9)

HSP 1 Score: 155 bits (392), Expect = 9.230e-44
Identity = 77/115 (66.96%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            S +I+SLVK YT+  L  +KGP+TV+SGKKRRLT +EC  DL +M DVAK+ADLVLL+IDA +GFEMETFEFLN+LQ HGFPKVMGVLTHLD+F++ K+    KK+ K RFW EI
Sbjct:   89 STLIRSLVKRYTKHNLNEIKGPITVVSGKKRRLTFMECNNDLNSMIDVAKIADLVLLMIDASFGFEMETFEFLNILQSHGFPKVMGVLTHLDKFRNNKSLRATKKRLKDRFWTEI 203
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: A0A2P5YM98_GOSBA (Bms1-type G domain-containing protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5YM98_GOSBA)

HSP 1 Score: 149 bits (376), Expect = 2.070e-43
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            S +IK+LVKHYT+  L  V+GP+T++SGK+RRL  +ECP D+  M D AK ADL LL+ID  YGFEMETFEFLN+LQ+HGFPKVMGVLTHLD+FK  K     K++ K RFW EI
Sbjct:   64 SLLIKTLVKHYTKHNLPDVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLKKTKQRLKHRFWTEI 178
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: A0A5J4XK00_9CHLO (Ribosome biogenesis BMS1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XK00_9CHLO)

HSP 1 Score: 154 bits (390), Expect = 2.500e-43
Identity = 77/115 (66.96%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            + +IK+L+KHY  Q L  VKGP+TV+SGK RRLT +ECP DL  M D AK ADLVLL++D  +GFEMETFEFLNLLQ+HGFPKVMGVLTHLD FK +K     KK  K RFWAEI
Sbjct:  101 TTLIKNLIKHYVNQNLSEVKGPITVVSGKTRRLTFVECPQDLHGMIDAAKYADLVLLMVDGGFGFEMETFEFLNLLQVHGFPKVMGVLTHLDGFKDQKKLKKTKKALKHRFWAEI 215
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BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Match: A0A7S0WVV3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WVV3_9CHLO)

HSP 1 Score: 150 bits (380), Expect = 3.200e-43
Identity = 75/115 (65.22%), Postives = 88/115 (76.52%), Query Frame = 1 
Query:    1 SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAKVADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQSTAKKQRKKRFWAEI 345
            + +IKSLVKHYT+  L  +KGP+T+ISGKKRRLT +EC  DL  M D AK ADLVLLV+D  +GFEMETFEFLN+LQ+HGFPKVMGVLTHLD+F         KK+ K RFW EI
Sbjct:   87 TTIIKSLVKHYTKHNLSDIKGPITLISGKKRRLTFVECSSDLNVMMDGAKYADLVLLVVDGSFGFEMETFEFLNMLQVHGFPKVMGVLTHLDDFDKPSILKKTKKKLKHRFWTEI 201
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114821.3081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HJR5_ACACA9.050e-4670.43Ribosome biogenesis protein n=1 Tax=Acanthamoeba c... [more]
A0A7S3C8Q3_9CHLO9.320e-4568.70Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A7S3YEJ2_HETAK1.170e-4467.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6A7GA06_9CRUS1.480e-4468.70Ribosome biogenesis protein BMS1 homolog (Fragment... [more]
A0A4P9Y0H9_9FUNG4.540e-4465.22NUC121 domain-containing protein n=1 Tax=Piptoceph... [more]
A0A7S1G9T8_9STRA4.760e-4467.83Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
I1CTC2_RHIO99.230e-4466.96Bms1-type G domain-containing protein n=1 Tax=Rhiz... [more]
A0A2P5YM98_GOSBA2.070e-4363.48Bms1-type G domain-containing protein n=1 Tax=Goss... [more]
A0A5J4XK00_9CHLO2.500e-4366.96Ribosome biogenesis BMS1 n=1 Tax=Trebouxia sp. A1-... [more]
A0A7S0WVV3_9CHLO3.200e-4365.22Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114821contigM-pyrifera_M_contig114821:226..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score159.1
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog36080.S2JGF9
Preferred nameBMS1
KEGG koko:K14569
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000462,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034470,GO:0034471,GO:0034511,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U3 snoRNA binding
EggNOG OGs1GVR8@112252,38WKY@33154,3NXR7@4751,COG5192@1,KOG1951@2759
COG Functional cat.J
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.1211402-CDS-M-pyrifera_M_contig114821:225..5701622815664.1211402-CDS-M-pyrifera_M_contig114821:225..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114821 226..570 +
1692277511.1243217-CDS-M-pyrifera_M_contig114821:225..5701692277511.1243217-CDS-M-pyrifera_M_contig114821:225..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114821 226..570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114821.3081.1prot_M-pyrifera_M_contig114821.3081.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114821 226..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114821.3081.1

>prot_M-pyrifera_M_contig114821.3081.1 ID=prot_M-pyrifera_M_contig114821.3081.1|Name=mRNA_M-pyrifera_M_contig114821.3081.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
SAVIKSLVKHYTRQTLKSVKGPMTVISGKKRRLTLLECPVDLAAMADVAK
VADLVLLVIDAHYGFEMETFEFLNLLQIHGFPKVMGVLTHLDEFKSRKAQ
STAKKQRKKRFWAEI
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mRNA from alignment at M-pyrifera_M_contig114821:226..570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114821.3081.1 ID=mRNA_M-pyrifera_M_contig114821.3081.1|Name=mRNA_M-pyrifera_M_contig114821.3081.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig114821:226..570+ (Macrocystis pyrifera P11B4 male)
AGCGCAGTGATCAAGTCTCTGGTGAAGCACTACACACGGCAGACGCTGAA
GAGTGTGAAGGGGCCAATGACAGTGATATCTGGCAAGAAGAGACGCCTGA
CGCTCCTCGAGTGTCCAGTGGACTTGGCGGCGATGGCAGACGTGGCAAAG
GTGGCGGATTTGGTGTTGCTCGTGATCGACGCCCACTACGGCTTCGAAAT
GGAGACGTTCGAGTTCCTCAACCTCCTCCAGATCCACGGCTTCCCCAAGG
TGATGGGCGTGCTGACGCACCTGGACGAATTCAAGTCGAGGAAAGCACAG
AGCACAGCCAAGAAACAGCGGAAGAAACGGTTCTGGGCAGAGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114821:226..570+

>mRNA_M-pyrifera_M_contig114821.3081.1 ID=mRNA_M-pyrifera_M_contig114821.3081.1|Name=mRNA_M-pyrifera_M_contig114821.3081.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig114821:226..570+ (Macrocystis pyrifera P11B4 male)
AGCGCAGTGATCAAGTCTCTGGTGAAGCACTACACACGGCAGACGCTGAA
GAGTGTGAAGGGGCCAATGACAGTGATATCTGGCAAGAAGAGACGCCTGA
CGCTCCTCGAGTGTCCAGTGGACTTGGCGGCGATGGCAGACGTGGCAAAG
GTGGCGGATTTGGTGTTGCTCGTGATCGACGCCCACTACGGCTTCGAAAT
GGAGACGTTCGAGTTCCTCAACCTCCTCCAGATCCACGGCTTCCCCAAGG
TGATGGGCGTGCTGACGCACCTGGACGAATTCAAGTCGAGGAAAGCACAG
AGCACAGCCAAGAAACAGCGGAAGAAACGGTTCTGGGCAGAGATCAGCGC
AGTGATCAAGTCTCTGGTGAAGCACTACACACGGCAGACGCTGAAGAGTG
TGAAGGGGCCAATGACAGTGATATCTGGCAAGAAGAGACGCCTGACGCTC
CTCGAGTGTCCAGTGGACTTGGCGGCGATGGCAGACGTGGCAAAGGTGGC
GGATTTGGTGTTGCTCGTGATCGACGCCCACTACGGCTTCGAAATGGAGA
CGTTCGAGTTCCTCAACCTCCTCCAGATCCACGGCTTCCCCAAGGTGATG
GGCGTGCTGACGCACCTGGACGAATTCAAGTCGAGGAAAGCACAGAGCAC
AGCCAAGAAACAGCGGAAGAAACGGTTCTGGGCAGAGATC
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