mRNA_M-pyrifera_M_contig114781.3068.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114781.3068.1
Unique NamemRNA_M-pyrifera_M_contig114781.3068.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114781.3068.1 vs. uniprot
Match: C3XPR2_BRAFL (UBA domain-containing protein (Fragment) n=5 Tax=Branchiostoma TaxID=7737 RepID=C3XPR2_BRAFL)

HSP 1 Score: 55.5 bits (132), Expect = 3.010e-6
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1
Query:    1 MQVDYNNKRLALWEPMVELWPCTIKYHRTPIPDVTPVQYNNKASITSDKVLNVNLSKVFFDTMKLCLSSWTEDYL 225
            + VDY N+ L+ WEP+VE W       + P  DV P     +  IT++  LN+N++  F D       +WTEDYL
Sbjct: 2597 LTVDYYNRELSGWEPLVEPWKSQFGLTQQPESDVQPSAL--QVRITAEDRLNLNITSSFLDQYSSTQKNWTEDYL 2669          
BLAST of mRNA_M-pyrifera_M_contig114781.3068.1 vs. uniprot
Match: B4MXM9_DROWI (Uncharacterized protein n=1 Tax=Drosophila willistoni TaxID=7260 RepID=B4MXM9_DROWI)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-5
Identity = 24/74 (32.43%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    7 VDYNNKRLALWEPMVELWPCTIKYHRTPIPDVTPVQYNNKASI--TSDKVLNVNLSKVFFDTMKLCLSSWTEDY 222
            V+Y N+RL+ WEP+VE+W C++K+        T + Y  +  I   S ++L +N++  F +   + L +WT D+
Sbjct: 2446 VNYYNRRLSGWEPVVEVWECSVKWKLIK----TQIDYKKRFEICVNSKQLLKLNVTSTFIELFNMVLKNWTIDF 2515          
BLAST of mRNA_M-pyrifera_M_contig114781.3068.1 vs. uniprot
Match: UPI001EE50548 (vacuolar protein sorting-associated protein 13D-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE50548)

HSP 1 Score: 53.1 bits (126), Expect = 1.650e-5
Identity = 40/128 (31.25%), Postives = 58/128 (45.31%), Query Frame = 1
Query:    1 MQVDYNNKRLALWEPMVELWPCTIKYHRTPIPDVTPVQYNNKASITSDKVLNVNLSKVFFDTMKLCLSSWTEDYL--------SSTDTDIDPASVRSILGAPSQKTADKGEYSI--LIHNDTGKALTY 354
            M  +Y N+ L+ WEP +E W C  ++ +   P+           I++++VLNVNL+    +   L   SWTEDYL        S     + P+S+      PS K   +    I   I NDTG  L Y
Sbjct:   13 MTGEYYNRSLSGWEPFLETWRCFAEWKQFKEPEE-----KMSFQISTNEVLNVNLTSTLLEQYHLTKGSWTEDYLKDNRDSLKSQVKYSVSPSSL------PSSKLLRRRLPFIPYTIRNDTGCDLWY 129          
BLAST of mRNA_M-pyrifera_M_contig114781.3068.1 vs. uniprot
Match: UPI001EE540A6 (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13D-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE540A6)

HSP 1 Score: 53.1 bits (126), Expect = 1.870e-5
Identity = 40/128 (31.25%), Postives = 58/128 (45.31%), Query Frame = 1
Query:    1 MQVDYNNKRLALWEPMVELWPCTIKYHRTPIPDVTPVQYNNKASITSDKVLNVNLSKVFFDTMKLCLSSWTEDYL--------SSTDTDIDPASVRSILGAPSQKTADKGEYSI--LIHNDTGKALTY 354
            M  +Y N+ L+ WEP +E W C  ++ +   P+           I++++VLNVNL+    +   L   SWTEDYL        S     + P+S+      PS K   +    I   I NDTG  L Y
Sbjct:  101 MTGEYYNRSLSGWEPFLETWRCFAEWKQFKEPEE-----KMSFQISTNEVLNVNLTSTLLEQYHLTKGSWTEDYLKDNRDSLKSQVKYSVSPSSL------PSSKLLRRRLPFIPYTIRNDTGCDLWY 217          
BLAST of mRNA_M-pyrifera_M_contig114781.3068.1 vs. uniprot
Match: UPI00201F185A (vacuolar protein sorting-associated protein 13D-like isoform X1 n=4 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F185A)

HSP 1 Score: 52.8 bits (125), Expect = 2.620e-5
Identity = 39/128 (30.47%), Postives = 58/128 (45.31%), Query Frame = 1
Query:    1 MQVDYNNKRLALWEPMVELWPCTIKYHRTPIPDVTPVQYNNKASITSDKVLNVNLSKVFFDTMKLCLSSWTEDYL--------SSTDTDIDPASVRSILGAPSQKTADKGEYSI--LIHNDTGKALTY 354
            M  +Y N+ L+ WEP +E W C  ++ +   P+           I++++VLNVNL+    +   L   +WTEDYL        S     + P+S+      PS K   +    I   I NDTG  L Y
Sbjct: 2856 MTGEYYNRSLSGWEPFLETWRCLAEWKQFKEPEE-----KMSFQISTNEVLNVNLTSTLLEQYHLTKGNWTEDYLKDNRDSMKSQVKDSVSPSSL------PSSKLLRRRLPFIPYTIRNDTGCDLWY 2972          
BLAST of mRNA_M-pyrifera_M_contig114781.3068.1 vs. uniprot
Match: A0A7J6YZI1_9COLE (Uncharacterized protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J6YZI1_9COLE)

HSP 1 Score: 52.0 bits (123), Expect = 4.850e-5
Identity = 24/79 (30.38%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 MQVDYNNKRLALWEPMVELWPCTIKYHRTPIPDVTPVQYNNKASITSDKVLNVNLSKVFFDTMKLCLSSWTEDYLSSTD 237
            + VDY N+ L+ WEP+VE W C + +      +++  +  ++ +I S ++LNVN++    D  K    SW +DY ++++
Sbjct: 2595 LSVDYYNRILSGWEPLVEPWKCEVVWDHVFTTNLS--KNRSQLNIESQEMLNVNITSSLVDLYKQVHDSWVQDYYNTSN 2671          
BLAST of mRNA_M-pyrifera_M_contig114781.3068.1 vs. uniprot
Match: UPI001C20496B (vacuolar protein sorting-associated protein 13D n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C20496B)

HSP 1 Score: 51.2 bits (121), Expect = 8.990e-5
Identity = 33/119 (27.73%), Postives = 57/119 (47.90%), Query Frame = 1
Query:    1 MQVDYNNKRLALWEPMVELWPCTIKYHRTPIPDVTPVQYNNKASITSDKVLNVNLSKVFFDTMKLCLSSWTEDYLSSTDTDIDPASVR-SILGAPSQKTADKGEYSILIHNDTGKALTY 354
            + VDY N+ L+ WEP+VE W     +  T    +T  +   +  ++S  +LN+N++    D + L  ++WT DY +       P + R S  G+P+            +HN TG+ L +
Sbjct: 2547 LSVDYYNRALSGWEPVVEPWRADAWWEYTLCSSLTRARL--QLELSSADLLNINITSALVDLLALVRTNWTADYYA-------PQAPRGSPKGSPAGHRRRSPFVPYALHNLTGQRLWF 2656          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114781.3068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
C3XPR2_BRAFL3.010e-637.33UBA domain-containing protein (Fragment) n=5 Tax=B... [more]
B4MXM9_DROWI1.040e-532.43Uncharacterized protein n=1 Tax=Drosophila willist... [more]
UPI001EE505481.650e-531.25vacuolar protein sorting-associated protein 13D-li... [more]
UPI001EE540A61.870e-531.25LOW QUALITY PROTEIN: vacuolar protein sorting-asso... [more]
UPI00201F185A2.620e-530.47vacuolar protein sorting-associated protein 13D-li... [more]
A0A7J6YZI1_9COLE4.850e-530.38Uncharacterized protein n=1 Tax=Lamprigera yunnana... [more]
UPI001C20496B8.990e-527.73vacuolar protein sorting-associated protein 13D n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114781contigM-pyrifera_M_contig114781:73..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.5004654-CDS-M-pyrifera_M_contig114781:72..4711622815663.5004654-CDS-M-pyrifera_M_contig114781:72..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114781 73..471 +
1692277510.8606575-CDS-M-pyrifera_M_contig114781:72..4711692277510.8606575-CDS-M-pyrifera_M_contig114781:72..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114781 73..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114781.3068.1prot_M-pyrifera_M_contig114781.3068.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114781 73..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114781.3068.1

>prot_M-pyrifera_M_contig114781.3068.1 ID=prot_M-pyrifera_M_contig114781.3068.1|Name=mRNA_M-pyrifera_M_contig114781.3068.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MQVDYNNKRLALWEPMVELWPCTIKYHRTPIPDVTPVQYNNKASITSDKV
LNVNLSKVFFDTMKLCLSSWTEDYLSSTDTDIDPASVRSILGAPSQKTAD
KGEYSILIHNDTGKALTYWDEAGNAHRVQNGEE
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mRNA from alignment at M-pyrifera_M_contig114781:73..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114781.3068.1 ID=mRNA_M-pyrifera_M_contig114781.3068.1|Name=mRNA_M-pyrifera_M_contig114781.3068.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig114781:73..471+ (Macrocystis pyrifera P11B4 male)
ATGCAGGTGGACTACAACAACAAACGTCTCGCTCTTTGGGAGCCGATGGT GGAGCTCTGGCCCTGCACAATCAAGTACCACAGGACTCCGATTCCTGACG TGACTCCTGTGCAGTACAACAACAAGGCCAGCATCACCTCCGACAAGGTC CTCAACGTGAACCTCTCCAAGGTCTTCTTCGATACCATGAAACTCTGCCT GAGCTCTTGGACGGAGGATTACCTCAGCAGCACCGACACTGACATCGATC CCGCATCAGTGCGGAGCATTCTCGGAGCCCCCAGCCAGAAGACCGCCGAC AAGGGAGAGTACTCCATCCTCATCCACAACGACACAGGCAAGGCCCTCAC CTACTGGGACGAGGCAGGAAACGCCCACCGTGTGCAGAATGGGGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114781:73..471+

>mRNA_M-pyrifera_M_contig114781.3068.1 ID=mRNA_M-pyrifera_M_contig114781.3068.1|Name=mRNA_M-pyrifera_M_contig114781.3068.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig114781:73..471+ (Macrocystis pyrifera P11B4 male)
ATGCAGGTGGACTACAACAACAAACGTCTCGCTCTTTGGGAGCCGATGGT
GGAGCTCTGGCCCTGCACAATCAAGTACCACAGGACTCCGATTCCTGACG
TGACTCCTGTGCAGTACAACAACAAGGCCAGCATCACCTCCGACAAGGTC
CTCAACGTGAACCTCTCCAAGGTCTTCTTCGATACCATGAAACTCTGCCT
GAGCTCTTGGACGGAGGATTACCTCAGCAGCACCGACACTGACATCGATC
CCGCATCAGTGCGGAGCATTCTCGGAGCCCCCAGCCAGAAGACCGCCGAC
AAGGGAGAGTACTCCATCCTCATCCACAACGACACAGGCAAGGCCCTCAC
CTACTGGGACGAGGCAGGAAACGCCCACCGTGTGCAGAATGGGGAGGAGA
TGCAGGTGGACTACAACAACAAACGTCTCGCTCTTTGGGAGCCGATGGTG
GAGCTCTGGCCCTGCACAATCAAGTACCACAGGACTCCGATTCCTGACGT
GACTCCTGTGCAGTACAACAACAAGGCCAGCATCACCTCCGACAAGGTCC
TCAACGTGAACCTCTCCAAGGTCTTCTTCGATACCATGAAACTCTGCCTG
AGCTCTTGGACGGAGGATTACCTCAGCAGCACCGACACTGACATCGATCC
CGCATCAGTGCGGAGCATTCTCGGAGCCCCCAGCCAGAAGACCGCCGACA
AGGGAGAGTACTCCATCCTCATCCACAACGACACAGGCAAGGCCCTCACC
TACTGGGACGAGGCAGGAAACGCCCACCGTGTGCAGAATGGGGAGGAG
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