mRNA_M-pyrifera_M_contig114706.3060.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114706.3060.1
Unique NamemRNA_M-pyrifera_M_contig114706.3060.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114706.3060.1 vs. uniprot
Match: A0A1G6DUS5_9HYPH (Uncharacterized protein involved in exopolysaccharide biosynthesis n=2 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6DUS5_9HYPH)

HSP 1 Score: 176 bits (445), Expect = 6.380e-51
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 VAHTLDNQGTAVAGPASPRARSYAEARSASGLAVERGRLVDRRVSDGTVAVDIGHLGGWLRRGLVVLFLLAILGAVAGFLFATMTKPIYTVSTDI 285
            +AHTLDNQGTAVAGPASPRARSYAEAR+ASGLAVERGRLVDRRVSDGTVAVDIGHLGGWLRRGLVVLFLLAILGAVAGFLFATMTKPIYTVSTDI
Sbjct:    1 MAHTLDNQGTAVAGPASPRARSYAEARAASGLAVERGRLVDRRVSDGTVAVDIGHLGGWLRRGLVVLFLLAILGAVAGFLFATMTKPIYTVSTDI 95
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114706.3060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1G6DUS5_9HYPH6.380e-5197.89Uncharacterized protein involved in exopolysacchar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114706contigM-pyrifera_M_contig114706:3..287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.038788-CDS-M-pyrifera_M_contig114706:2..2871622815663.038788-CDS-M-pyrifera_M_contig114706:2..287Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114706 3..287 -
1692277510.6562226-CDS-M-pyrifera_M_contig114706:2..2871692277510.6562226-CDS-M-pyrifera_M_contig114706:2..287Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114706 3..287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114706.3060.1prot_M-pyrifera_M_contig114706.3060.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114706 3..287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114706.3060.1

>prot_M-pyrifera_M_contig114706.3060.1 ID=prot_M-pyrifera_M_contig114706.3060.1|Name=mRNA_M-pyrifera_M_contig114706.3060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
VAHTLDNQGTAVAGPASPRARSYAEARSASGLAVERGRLVDRRVSDGTVA
VDIGHLGGWLRRGLVVLFLLAILGAVAGFLFATMTKPIYTVSTDI
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mRNA from alignment at M-pyrifera_M_contig114706:3..287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114706.3060.1 ID=mRNA_M-pyrifera_M_contig114706.3060.1|Name=mRNA_M-pyrifera_M_contig114706.3060.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig114706:3..287- (Macrocystis pyrifera P11B4 male)
GTGGCACACACACTCGACAATCAAGGAACCGCAGTTGCAGGCCCAGCCTC
GCCTAGGGCGCGCAGCTATGCGGAGGCCCGGTCGGCCAGCGGGTTGGCGG
TCGAACGTGGGCGGCTGGTCGATCGTCGTGTCTCGGATGGCACCGTTGCC
GTCGATATAGGTCATCTCGGCGGATGGCTGCGCCGGGGTTTGGTGGTTCT
GTTCCTCTTGGCCATTCTCGGAGCGGTCGCCGGCTTTCTCTTCGCGACGA
TGACCAAGCCGATCTACACGGTGTCGACTGACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114706:3..287-

>mRNA_M-pyrifera_M_contig114706.3060.1 ID=mRNA_M-pyrifera_M_contig114706.3060.1|Name=mRNA_M-pyrifera_M_contig114706.3060.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig114706:3..287- (Macrocystis pyrifera P11B4 male)
GTGGCACACACACTCGACAATCAAGGAACCGCAGTTGCAGGCCCAGCCTC
GCCTAGGGCGCGCAGCTATGCGGAGGCCCGGTCGGCCAGCGGGTTGGCGG
TCGAACGTGGGCGGCTGGTCGATCGTCGTGTCTCGGATGGCACCGTTGCC
GTCGATATAGGTCATCTCGGCGGATGGCTGCGCCGGGGTTTGGTGGTTCT
GTTCCTCTTGGCCATTCTCGGAGCGGTCGCCGGCTTTCTCTTCGCGACGA
TGACCAAGCCGATCTACACGGTGTCGACTGACATCGTGGCACACACACTC
GACAATCAAGGAACCGCAGTTGCAGGCCCAGCCTCGCCTAGGGCGCGCAG
CTATGCGGAGGCCCGGTCGGCCAGCGGGTTGGCGGTCGAACGTGGGCGGC
TGGTCGATCGTCGTGTCTCGGATGGCACCGTTGCCGTCGATATAGGTCAT
CTCGGCGGATGGCTGCGCCGGGGTTTGGTGGTTCTGTTCCTCTTGGCCAT
TCTCGGAGCGGTCGCCGGCTTTCTCTTCGCGACGATGACCAAGCCGATCT
ACACGGTGTCGACTGACATC
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