mRNA_M-pyrifera_M_contig114687.3058.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114687.3058.1
Unique NamemRNA_M-pyrifera_M_contig114687.3058.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114687.3058.1 vs. uniprot
Match: A0A2G5L501_9BACT (Uncharacterized protein n=1 Tax=Reichenbachiella sp. 5M10 TaxID=1889772 RepID=A0A2G5L501_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 4.680e-9
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 2 
Query:  116 MTMIILIAVLFVGAAICPFVLPNEKVSDHEKDWD 217
            M M++ I VLFV A IC FVLPNEKVS+HEKDWD
Sbjct:   46 MAMLVFIFVLFVAAIICAFVLPNEKVSNHEKDWD 79
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BLAST of mRNA_M-pyrifera_M_contig114687.3058.1 vs. uniprot
Match: A0A1M6WUR7_9BACT (Uncharacterized protein n=1 Tax=Reichenbachiella agariperforans TaxID=156994 RepID=A0A1M6WUR7_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 8.090e-9
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 2 
Query:  116 MTMIILIAVLFVGAAICPFVLPNEKVSDHEKDWD 217
            M M+ LI VLFV A +C FVLPNEKVS+HEKDWD
Sbjct:   25 MAMLGLIIVLFVAAIVCAFVLPNEKVSNHEKDWD 58
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BLAST of mRNA_M-pyrifera_M_contig114687.3058.1 vs. uniprot
Match: A0A3D9KYC5_MARFU (Uncharacterized protein n=1 Tax=Marinoscillum furvescens DSM 4134 TaxID=1122208 RepID=A0A3D9KYC5_MARFU)

HSP 1 Score: 45.4 bits (106), Expect = 6.170e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2 
Query:  116 MTMIILIAVLFVGAAICPFVLPNEKVSDHEKD 211
            M M+ +I ++FV A +CP +LPN KVS HEKD
Sbjct:    1 MAMLGIIIIMFVAAIVCPIILPNNKVSSHEKD 32
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114687.3058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2G5L501_9BACT4.680e-973.53Uncharacterized protein n=1 Tax=Reichenbachiella s... [more]
A0A1M6WUR7_9BACT8.090e-973.53Uncharacterized protein n=1 Tax=Reichenbachiella a... [more]
A0A3D9KYC5_MARFU6.170e-556.25Uncharacterized protein n=1 Tax=Marinoscillum furv... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114687contigM-pyrifera_M_contig114687:168..393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size226
Cds size111
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.9570465-CDS-M-pyrifera_M_contig114687:167..2781622815662.9570465-CDS-M-pyrifera_M_contig114687:167..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114687 168..278 -
1692277510.6251357-CDS-M-pyrifera_M_contig114687:167..2781692277510.6251357-CDS-M-pyrifera_M_contig114687:167..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114687 168..278 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.9677224-UTR-M-pyrifera_M_contig114687:278..3931622815662.9677224-UTR-M-pyrifera_M_contig114687:278..393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114687 279..393 -
1692277510.6343973-UTR-M-pyrifera_M_contig114687:278..3931692277510.6343973-UTR-M-pyrifera_M_contig114687:278..393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114687 279..393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114687.3058.1prot_M-pyrifera_M_contig114687.3058.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114687 168..278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114687.3058.1

>prot_M-pyrifera_M_contig114687.3058.1 ID=prot_M-pyrifera_M_contig114687.3058.1|Name=mRNA_M-pyrifera_M_contig114687.3058.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
MTMIILIAVLFVGAAICPFVLPNEKVSDHEKDWDTW*
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mRNA from alignment at M-pyrifera_M_contig114687:168..393-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114687.3058.1 ID=mRNA_M-pyrifera_M_contig114687.3058.1|Name=mRNA_M-pyrifera_M_contig114687.3058.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=226bp|location=Sequence derived from alignment at M-pyrifera_M_contig114687:168..393- (Macrocystis pyrifera P11B4 male)
AGCGAATGCCATGTTAGCCCAAGGCAACGTTTAAATTTTGACAATAATAA
TGATCCAATTTGTGGTATGGATAGAACGGTTTATCTTTGGCGTACAATTT
TAAATCACGTTCGATATGACAATGATAATTTTAATTGCTGTTTTGTTTGT
GGGTGCGGCTATTTGTCCATTTGTACTACCAAACGAAAAAGTAAGCGATC
ACGAAAAAGACTGGGATACTTGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114687:168..393-

>mRNA_M-pyrifera_M_contig114687.3058.1 ID=mRNA_M-pyrifera_M_contig114687.3058.1|Name=mRNA_M-pyrifera_M_contig114687.3058.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig114687:168..393- (Macrocystis pyrifera P11B4 male)
ATGACAATGATAATTTTAATTGCTGTTTTGTTTGTGGGTGCGGCTATTTG
TCCATTTGTACTACCAAACGAAAAAGTAAGCGATCACGAAAAAGACTGGG
ATACTTGGTAGATGACAATGATAATTTTAATTGCTGTTTTGTTTGTGGGT
GCGGCTATTTGTCCATTTGTACTACCAAACGAAAAAGTAAGCGATCACGA
AAAAGACTGGGATACTTGGTAG
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