mRNA_M-pyrifera_M_contig114670.3053.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114670.3053.1
Unique NamemRNA_M-pyrifera_M_contig114670.3053.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114670.3053.1 vs. uniprot
Match: A0A0M0K1W3_9EUKA (Aldose 1-epimerase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1W3_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 1.040e-18
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   10 LVHTETGQQAEVIQDAGGRLEKLELLSKQRPGTLHSVIQTHDGNATAIRTNPHYAGALLAPWSNRIKNGTYSFRGHTYYLPHNE 261
            L +T TG++ E+I ++GG  E++ L S    G L  V+QT++ NATA+R N HYAG +L P++NRI+NGTY+F G  Y LP NE
Sbjct:   36 LSNTATGERVEIIWESGGNTERVRLRSPTT-GLLRDVLQTNNNNATAVRLNQHYAGNILLPFANRIRNGTYNFFGRAYLLPRNE 118
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BLAST of mRNA_M-pyrifera_M_contig114670.3053.1 vs. uniprot
Match: A0A7S1FEZ2_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FEZ2_NOCSC)

HSP 1 Score: 71.2 bits (173), Expect = 1.300e-12
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:   10 LVHTETGQQAEVIQDAGGRLEKLELLSKQRPGTLHSVIQTHDGNATAIRTNP-HYAGALLAPWSNRIKNGTYSF---RGHTYYLPHNE 261
            L+ T T +   VI D+GGR++ L L    R G +  V+  +  +A A+RTN  HY+  LLAPW+NR+ NGTY F    G  ++LP NE
Sbjct:   42 LIFTSTSESVTVIWDSGGRVDSLRLRDGAR-GVVREVLVNNGEDANAVRTNSNHYSSCLLAPWANRVANGTYRFPPGAGPPHFLPRNE 128
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BLAST of mRNA_M-pyrifera_M_contig114670.3053.1 vs. uniprot
Match: A9VBB2_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VBB2_MONBE)

HSP 1 Score: 67.8 bits (164), Expect = 1.090e-11
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:   10 LVHTETGQQAEVIQDAGGRLEKLELLSKQRPGT--LHSVIQTHDGNATAIRTNPHYAGALLAPWSNRIKNGTYS 225
            L+ T T Q A +I + GGR+E + L+    P T  L  VI THDGNATA+ TNPH+ G +L P++NRI++ + S
Sbjct:   46 LLDTHTNQSAIIITNMGGRVEAIRLVD---PATNQLRDVIATHDGNATAMITNPHWQGEILLPYANRIRDASRS 116
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BLAST of mRNA_M-pyrifera_M_contig114670.3053.1 vs. uniprot
Match: A0A7S1QRT4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QRT4_ALECA)

HSP 1 Score: 62.8 bits (151), Expect = 1.430e-9
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   10 LVHTETGQQAEVIQDAGGRLEKLELLSKQRPGTLHSVIQTHDGNATAIRTNPHYAGALLAPWSNRIKNGTYSFRGHTYYLPHNE 261
            L +  TG+ A +I++ GG +++L LLS +   TL  V+  H  N++ +  NP + G +L P++NRI N TY F G  + LP N+
Sbjct:   54 LTNRRTGENASIIENYGGCVDELFLLSSR--STLKRVLWDHGRNSSDVDANPTWKGRMLLPYANRIGNATYLFNGTRHVLPVND 135
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BLAST of mRNA_M-pyrifera_M_contig114670.3053.1 vs. uniprot
Match: A0A5C4MEY7_9ACTN (Uncharacterized protein n=1 Tax=Mumia zhuanghuii TaxID=2585211 RepID=A0A5C4MEY7_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 1.550e-5
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:  130 HDGNATAIRTN-----PHYAGALLAPWSNRIKNGTYSFRGHTYYLPHNE 261
            HDGN   +  +     P Y G +LAPW NR+++GTY+F G TY +P NE
Sbjct:   25 HDGNDVVVPQDGEGGHPAYRGVVLAPWPNRLEDGTYTFGGRTYEVPLNE 73
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114670.3053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0M0K1W3_9EUKA1.040e-1850.00Aldose 1-epimerase n=1 Tax=Chrysochromulina tobini... [more]
A0A7S1FEZ2_NOCSC1.300e-1243.18Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A9VBB2_MONBE1.090e-1147.30Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S1QRT4_ALECA1.430e-938.10Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A5C4MEY7_9ACTN1.550e-546.94Uncharacterized protein n=1 Tax=Mumia zhuanghuii T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114670contigM-pyrifera_M_contig114670:42..302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog227086.JGI_V11_131855
KEGG rclassRC00021,RC00563,RC03180
KEGG koko:K01785,ko:K07561
KEGG ReactionR01602,R10455,R10619
KEGG Pathwayko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130
KEGG ModuleM00632
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aldose 1-epimerase activity
EggNOG OGsCOG2017@1,KOG1604@2759
EC2.5.1.108,5.1.3.3
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.7681098-CDS-M-pyrifera_M_contig114670:41..3021622815662.7681098-CDS-M-pyrifera_M_contig114670:41..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114670 42..302 -
1692277510.5467105-CDS-M-pyrifera_M_contig114670:41..3021692277510.5467105-CDS-M-pyrifera_M_contig114670:41..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114670 42..302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114670.3053.1prot_M-pyrifera_M_contig114670.3053.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114670 42..302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114670.3053.1

>prot_M-pyrifera_M_contig114670.3053.1 ID=prot_M-pyrifera_M_contig114670.3053.1|Name=mRNA_M-pyrifera_M_contig114670.3053.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
GYRLVHTETGQQAEVIQDAGGRLEKLELLSKQRPGTLHSVIQTHDGNATA
IRTNPHYAGALLAPWSNRIKNGTYSFRGHTYYLPHNE
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mRNA from alignment at M-pyrifera_M_contig114670:42..302-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114670.3053.1 ID=mRNA_M-pyrifera_M_contig114670.3053.1|Name=mRNA_M-pyrifera_M_contig114670.3053.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig114670:42..302- (Macrocystis pyrifera P11B4 male)
GGATATCGTCTTGTACACACGGAAACAGGACAACAAGCGGAGGTGATCCA
AGATGCGGGTGGGAGGCTGGAGAAGCTGGAATTGCTCTCGAAGCAGCGTC
CTGGTACGTTGCACTCTGTGATCCAGACACACGATGGCAACGCCACTGCG
ATTCGCACTAACCCCCACTACGCTGGAGCTCTCCTTGCCCCTTGGTCGAA
CCGAATCAAGAACGGGACGTATTCCTTCCGAGGCCACACCTACTACCTCC
CACACAACGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114670:42..302-

>mRNA_M-pyrifera_M_contig114670.3053.1 ID=mRNA_M-pyrifera_M_contig114670.3053.1|Name=mRNA_M-pyrifera_M_contig114670.3053.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig114670:42..302- (Macrocystis pyrifera P11B4 male)
GGATATCGTCTTGTACACACGGAAACAGGACAACAAGCGGAGGTGATCCA
AGATGCGGGTGGGAGGCTGGAGAAGCTGGAATTGCTCTCGAAGCAGCGTC
CTGGTACGTTGCACTCTGTGATCCAGACACACGATGGCAACGCCACTGCG
ATTCGCACTAACCCCCACTACGCTGGAGCTCTCCTTGCCCCTTGGTCGAA
CCGAATCAAGAACGGGACGTATTCCTTCCGAGGCCACACCTACTACCTCC
CACACAACGAAGGATATCGTCTTGTACACACGGAAACAGGACAACAAGCG
GAGGTGATCCAAGATGCGGGTGGGAGGCTGGAGAAGCTGGAATTGCTCTC
GAAGCAGCGTCCTGGTACGTTGCACTCTGTGATCCAGACACACGATGGCA
ACGCCACTGCGATTCGCACTAACCCCCACTACGCTGGAGCTCTCCTTGCC
CCTTGGTCGAACCGAATCAAGAACGGGACGTATTCCTTCCGAGGCCACAC
CTACTACCTCCCACACAACGAA
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