mRNA_M-pyrifera_M_contig114633.3047.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114633.3047.1
Unique NamemRNA_M-pyrifera_M_contig114633.3047.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114633.3047.1 vs. uniprot
Match: A0A2V0P0B8_9CHLO (IFRD domain-containing protein (Fragment) n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P0B8_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 4.220e-5
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:    4 TLLDTFIRCLRDGKEAGARLAGTAISLLALTAGPQRQDSYRHVYMVLQPLAERDPKLGVRAAALHALAICCFLWSEE 234
            T++      L+ G    A LA TA++L  LT G   +  Y+ V   L   A+       RAAA+ ALA+CCF+ +E+
Sbjct:   86 TVIGRCQAALKKGGATEATLAATALALHVLTLGEPDESGYQGVLPDLLRAAKHGKSAAARAAAVDALAVCCFVMAED 162
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BLAST of mRNA_M-pyrifera_M_contig114633.3047.1 vs. uniprot
Match: A0A087SRG4_AUXPR (Interferon-related developmental regulator 1 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SRG4_AUXPR)

HSP 1 Score: 49.3 bits (116), Expect = 6.040e-5
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    1 ETLLDTFIRCLRDGKEAGARLAGTAISLLALT--AGPQRQDSYRHVYMVLQPLA--ERDPKLGVRAAALHALAICCFLWSE 231
            ETL   F+R LR GK A ARL   A+ L A+T  AGP  +  +     VL+P+A   + P+   R +A+ AL++ CF+ +E
Sbjct:  119 ETLFQLFLRSLRRGKGAEARLGARALGLHAITLGAGPAVERMHAEALPVLEPIALTGQGPE---RCSAIDALSMLCFVGAE 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114633.3047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V0P0B8_9CHLO4.220e-535.06IFRD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A087SRG4_AUXPR6.040e-539.51Interferon-related developmental regulator 1 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114633contigM-pyrifera_M_contig114633:336..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.4700425-CDS-M-pyrifera_M_contig114633:335..5691622815662.4700425-CDS-M-pyrifera_M_contig114633:335..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114633 336..569 +
1692277510.3848443-CDS-M-pyrifera_M_contig114633:335..5691692277510.3848443-CDS-M-pyrifera_M_contig114633:335..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114633 336..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114633.3047.1prot_M-pyrifera_M_contig114633.3047.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114633 336..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114633.3047.1

>prot_M-pyrifera_M_contig114633.3047.1 ID=prot_M-pyrifera_M_contig114633.3047.1|Name=mRNA_M-pyrifera_M_contig114633.3047.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
ETLLDTFIRCLRDGKEAGARLAGTAISLLALTAGPQRQDSYRHVYMVLQP
LAERDPKLGVRAAALHALAICCFLWSEE
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mRNA from alignment at M-pyrifera_M_contig114633:336..569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114633.3047.1 ID=mRNA_M-pyrifera_M_contig114633.3047.1|Name=mRNA_M-pyrifera_M_contig114633.3047.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig114633:336..569+ (Macrocystis pyrifera P11B4 male)
GAAACGCTGCTCGACACCTTCATCCGCTGCCTTCGCGACGGCAAGGAAGC
CGGCGCGCGGCTGGCGGGAACAGCCATCTCGCTCCTCGCGCTCACCGCGG
GGCCGCAGCGGCAGGACTCGTACCGCCACGTGTACATGGTGCTCCAGCCG
CTGGCGGAGCGCGACCCGAAGCTGGGCGTGCGCGCAGCCGCGCTGCACGC
GCTCGCCATCTGCTGCTTCCTGTGGAGCGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114633:336..569+

>mRNA_M-pyrifera_M_contig114633.3047.1 ID=mRNA_M-pyrifera_M_contig114633.3047.1|Name=mRNA_M-pyrifera_M_contig114633.3047.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig114633:336..569+ (Macrocystis pyrifera P11B4 male)
GAAACGCTGCTCGACACCTTCATCCGCTGCCTTCGCGACGGCAAGGAAGC
CGGCGCGCGGCTGGCGGGAACAGCCATCTCGCTCCTCGCGCTCACCGCGG
GGCCGCAGCGGCAGGACTCGTACCGCCACGTGTACATGGTGCTCCAGCCG
CTGGCGGAGCGCGACCCGAAGCTGGGCGTGCGCGCAGCCGCGCTGCACGC
GCTCGCCATCTGCTGCTTCCTGTGGAGCGAGGAGGAAACGCTGCTCGACA
CCTTCATCCGCTGCCTTCGCGACGGCAAGGAAGCCGGCGCGCGGCTGGCG
GGAACAGCCATCTCGCTCCTCGCGCTCACCGCGGGGCCGCAGCGGCAGGA
CTCGTACCGCCACGTGTACATGGTGCTCCAGCCGCTGGCGGAGCGCGACC
CGAAGCTGGGCGTGCGCGCAGCCGCGCTGCACGCGCTCGCCATCTGCTGC
TTCCTGTGGAGCGAGGAG
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