mRNA_M-pyrifera_M_contig11463.3045.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11463.3045.1
Unique NamemRNA_M-pyrifera_M_contig11463.3045.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11463.3045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11463contigM-pyrifera_M_contig11463:5697..6678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size982
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11463.3045.1prot_M-pyrifera_M_contig11463.3045.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11463 5794..6351 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.3341584-UTR-M-pyrifera_M_contig11463:5696..57931622815662.3341584-UTR-M-pyrifera_M_contig11463:5696..5793Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11463 5697..5793 +
1692277510.3324678-UTR-M-pyrifera_M_contig11463:5696..57931692277510.3324678-UTR-M-pyrifera_M_contig11463:5696..5793Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11463 5697..5793 +
1622815662.3636403-UTR-M-pyrifera_M_contig11463:6351..66781622815662.3636403-UTR-M-pyrifera_M_contig11463:6351..6678Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11463 6352..6678 +
1692277510.3563087-UTR-M-pyrifera_M_contig11463:6351..66781692277510.3563087-UTR-M-pyrifera_M_contig11463:6351..6678Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11463 6352..6678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.3457882-CDS-M-pyrifera_M_contig11463:5793..63511622815662.3457882-CDS-M-pyrifera_M_contig11463:5793..6351Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11463 5794..6351 +
1692277510.3451781-CDS-M-pyrifera_M_contig11463:5793..63511692277510.3451781-CDS-M-pyrifera_M_contig11463:5793..6351Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11463 5794..6351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11463.3045.1

>prot_M-pyrifera_M_contig11463.3045.1 ID=prot_M-pyrifera_M_contig11463.3045.1|Name=mRNA_M-pyrifera_M_contig11463.3045.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
MLHPIHLPITHVRAGNVRVSTPAVTILRRPDTRYTPSPCPRSLHRSADNT
TTTTTPTRRVRTWCAKEKMHHVQDKNPHVWHVNINIYAKRKRSLYGYRSR
VHGGPATNRQQQPACSTKLFKTSNRQRLPSRSIQLPPKDQSTRTIPEHPK
LRSGYEHYPGKKRRSQRVTSPKHHPMARGGRGNSS*
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mRNA from alignment at M-pyrifera_M_contig11463:5697..6678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11463.3045.1 ID=mRNA_M-pyrifera_M_contig11463.3045.1|Name=mRNA_M-pyrifera_M_contig11463.3045.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=982bp|location=Sequence derived from alignment at M-pyrifera_M_contig11463:5697..6678+ (Macrocystis pyrifera P11B4 male)
CGTGGCACTTGGTCATCGTTAATAATTTCTCGTAAATTTCTTCGTCCAAT
CAGCATATTTCGCCCCTCATTTTCGTTCCCCCTTCAGTGTGTGGTTCATG
CTCCATCCCATTCATCTACCCATTACCCATGTACGTGCCGGTAACGTTCG
TGTATCTACTCCTGCTGTAACCATACTACGCCGTCCAGACACACGATACA
CGCCCTCGCCGTGCCCTCGTTCGTTGCATCGGAGTGCCGACAATACCACT
ACTACCACCACACCAACTCGTCGGGTCCGAACATGGTGCGCAAAAGAAAA
AATGCACCATGTTCAAGACAAAAACCCGCACGTATGGCACGTAAACATTA
ATATTTATGCTAAACGTAAAAGAAGCCTCTACGGCTACCGCTCAAGAGTG
CATGGGGGCCCGGCGACCAACCGGCAACAGCAACCAGCCTGCAGCACCAA
GCTCTTCAAGACAAGCAACCGACAACGGCTACCATCCCGTAGCATCCAGC
TTCCACCAAAAGACCAATCAACCAGAACCATCCCGGAGCATCCCAAACTT
CGAAGCGGCTACGAGCACTACCCCGGAAAAAAACGACGCTCTCAAAGGGT
AACATCGCCAAAGCACCATCCCATGGCCCGGGGGGGCAGGGGTAACAGTA
GTTAACCCAGGCGACACCAAACCAAAACCTATTCCGATACAACAGTACGT
ATTGTAGTAATCGCGTCGTATACCCAAAAATCCAAGACCTCGAAAAACTA
GCACGTCATATCAACCTATCCTCTGCAACAACTCCCGAACATGACAGATA
AAACCAAGAGACAGGACGAAGACTAATAACCACGTGAGAAACGACACCAA
ACAAAGCGGCAGCGGCAAGCACCAAAAATAAAAACACAACTCGGAACACA
GGACTGCCTCGTGCGTTTGAAAAAACACGAACTAAAAGATATGACAAAAA
AAACGAGCTGCTCTACATCCTCCTCGTTTCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11463:5697..6678+

>mRNA_M-pyrifera_M_contig11463.3045.1 ID=mRNA_M-pyrifera_M_contig11463.3045.1|Name=mRNA_M-pyrifera_M_contig11463.3045.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig11463:5697..6678+ (Macrocystis pyrifera P11B4 male)
ATGCTCCATCCCATTCATCTACCCATTACCCATGTACGTGCCGGTAACGT
TCGTGTATCTACTCCTGCTGTAACCATACTACGCCGTCCAGACACACGAT
ACACGCCCTCGCCGTGCCCTCGTTCGTTGCATCGGAGTGCCGACAATACC
ACTACTACCACCACACCAACTCGTCGGGTCCGAACATGGTGCGCAAAAGA
AAAAATGCACCATGTTCAAGACAAAAACCCGCACGTATGGCACGTAAACA
TTAATATTTATGCTAAACGTAAAAGAAGCCTCTACGGCTACCGCTCAAGA
GTGCATGGGGGCCCGGCGACCAACCGGCAACAGCAACCAGCCTGCAGCAC
CAAGCTCTTCAAGACAAGCAACCGACAACGGCTACCATCCCGTAGCATCC
AGCTTCCACCAAAAGACCAATCAACCAGAACCATCCCGGAGCATCCCAAA
CTTCGAAGCGGCTACGAGCACTACCCCGGAAAAAAACGACGCTCTCAAAG
GGTAACATCGCCAAAGCACCATCCCATGGCCCGGGGGGGCAGGGGTAACA
GTAGTTAAATGCTCCATCCCATTCATCTACCCATTACCCATGTACGTGCC
GGTAACGTTCGTGTATCTACTCCTGCTGTAACCATACTACGCCGTCCAGA
CACACGATACACGCCCTCGCCGTGCCCTCGTTCGTTGCATCGGAGTGCCG
ACAATACCACTACTACCACCACACCAACTCGTCGGGTCCGAACATGGTGC
GCAAAAGAAAAAATGCACCATGTTCAAGACAAAAACCCGCACGTATGGCA
CGTAAACATTAATATTTATGCTAAACGTAAAAGAAGCCTCTACGGCTACC
GCTCAAGAGTGCATGGGGGCCCGGCGACCAACCGGCAACAGCAACCAGCC
TGCAGCACCAAGCTCTTCAAGACAAGCAACCGACAACGGCTACCATCCCG
TAGCATCCAGCTTCCACCAAAAGACCAATCAACCAGAACCATCCCGGAGC
ATCCCAAACTTCGAAGCGGCTACGAGCACTACCCCGGAAAAAAACGACGC
TCTCAAAGGGTAACATCGCCAAAGCACCATCCCATGGCCCGGGGGGGCAG
GGGTAACAGTAGTTAA
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