mRNA_M-pyrifera_M_contig114622.3044.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114622.3044.1
Unique NamemRNA_M-pyrifera_M_contig114622.3044.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114622.3044.1 vs. uniprot
Match: A0A3C1KS33_9GAMM (AAA domain-containing protein n=3 Tax=Haliea TaxID=475794 RepID=A0A3C1KS33_9GAMM)

HSP 1 Score: 280 bits (717), Expect = 2.850e-90
Identity = 157/174 (90.23%), Postives = 165/174 (94.83%), Query Frame = 1 
Query:    4 PLHDGAEHAQDAIATEAQASPGVVRGRQHLTVVAGAGGVAARRTGTDEMPAEVEHASVEVDLPSSTMAETVVAAPPAHKPEPVEETAGANPEPVAPSEPSAEPVAARSAAKPAQKVASRRRDPAAKRAAGHAARAASEPPREHGGGWVIGLILLSSVALVAWAATGFSLGFFLE 525
            PLHDGAEHAQDAIATEAQASP VVRGRQHLTVVAGAGGVAARRTGTDEMPAEVEHA V+VDLPSST AET+VAAPP H+PEPVE++ GANPEPVA SE SAEPVAARSAA+PAQKV +RRRDPAAKRAAGHA RAASEPPREHGGGWVIGLIL+SSVALVAWAATGFSLGFFLE
Sbjct:  309 PLHDGAEHAQDAIATEAQASPAVVRGRQHLTVVAGAGGVAARRTGTDEMPAEVEHAPVDVDLPSSTSAETLVAAPPTHRPEPVEDSVGANPEPVARSERSAEPVAARSAARPAQKVPARRRDPAAKRAAGHAPRAASEPPREHGGGWVIGLILVSSVALVAWAATGFSLGFFLE 482
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BLAST of mRNA_M-pyrifera_M_contig114622.3044.1 vs. uniprot
Match: A0A355SVC9_9GAMM (ATPase n=6 Tax=Halieaceae TaxID=1706372 RepID=A0A355SVC9_9GAMM)

HSP 1 Score: 154 bits (390), Expect = 1.300e-41
Identity = 101/177 (57.06%), Postives = 121/177 (68.36%), Query Frame = 1 
Query:    1 APLHDGAEHAQDAIATEAQASPGVVRGRQHLTVVAGAGGVAARRTGTDEMPAEVEHASVEVDLPSSTMAETVVAAPPAHKPEPVEETAGANPEPVAPSE--PSAEPVAARSAAKPAQKVASRRRDPAAKRAAGHAARAASEPPREHGGGWVIGLILLSSVALVAWAATGFSLGFFLE 525
            AP+ +  E AQ+AI  +AQ SP   RGRQHLTVVAGAGGVAARRTGTDE+  E  HA  EVD P+ T   +VVA+P  HK  P++    A P P A +    +A+P  A+ A +   K  +RRR  AA++    +AR  SEP  EHGGGWVIGLIL+SSVALVAWAATGFSLGFFLE
Sbjct:  309 APIDEAVESAQEAITPDAQVSPVTARGRQHLTVVAGAGGVAARRTGTDELAVETLHAPAEVDSPAPTAGASVVASP-LHKSAPLDGGENAEPVPAAAASRAQAAQPEDAKPATRAIPKRQARRRATAAQKPVAASARGTSEPSHEHGGGWVIGLILVSSVALVAWAATGFSLGFFLE 484
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BLAST of mRNA_M-pyrifera_M_contig114622.3044.1 vs. uniprot
Match: A0A2E7C7P8_9GAMM (AAA domain-containing protein n=2 Tax=Halieaceae TaxID=1706372 RepID=A0A2E7C7P8_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 4.760e-17
Identity = 76/173 (43.93%), Postives = 90/173 (52.02%), Query Frame = 1 
Query:   19 AEHAQDAIATEAQASPGVVRGRQHLTVVAGAGGVAARRTGTDEMPAEVEHASVEVDLPSST----MAETVVAAPPAHKPEPVEETAGANPEPVAPSEPSAEPVAARSAAKPAQKVASRRRDPAAKRAAGHAARAASEPPREHGGGWVIGLILLSSVALVAWAATGFSLGFFLE 525
            A  A DA+  + Q    VVRGRQHLTVVAGA GV ARRTGTDE      H  VE ++  +     M  T   AP        ++ A   P       P    VA+    + A     R   P      GH+A++   P  E GGGWVIG ILL+S+ALVAWAATGFS GFFLE
Sbjct:  323 AGRADDAV--QQQPEQQVVRGRQHLTVVAGAAGVTARRTGTDESVPTPIHGHVETEVAVTAAVDAMRATETIAPAPAPASTAQDAASDQPSVKGRPAPGGATVASGRTRRAAPAKKGRVTKPTTAARGGHSAQS---PGGELGGGWVIGGILLASIALVAWAATGFSFGFFLE 490
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114622.3044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3C1KS33_9GAMM2.850e-9090.23AAA domain-containing protein n=3 Tax=Haliea TaxID... [more]
A0A355SVC9_9GAMM1.300e-4157.06ATPase n=6 Tax=Halieaceae TaxID=1706372 RepID=A0A3... [more]
A0A2E7C7P8_9GAMM4.760e-1743.93AAA domain-containing protein n=2 Tax=Halieaceae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114622contigM-pyrifera_M_contig114622:2..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score159.1
Seed ortholog evalue1.9e-36
Seed eggNOG ortholog1121937.AUHJ01000009_gene1529
Preferred nameexeA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.general secretion pathway protein
EggNOG OGs1MU3G@1224,1RMI0@1236,465NU@72275,COG3267@1,COG3267@2
COG Functional cat.U
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size528
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.2978306-CDS-M-pyrifera_M_contig114622:1..5291622815662.2978306-CDS-M-pyrifera_M_contig114622:1..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114622 2..529 +
1692277510.3202112-CDS-M-pyrifera_M_contig114622:1..5291692277510.3202112-CDS-M-pyrifera_M_contig114622:1..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114622 2..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114622.3044.1prot_M-pyrifera_M_contig114622.3044.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114622 2..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114622.3044.1

>prot_M-pyrifera_M_contig114622.3044.1 ID=prot_M-pyrifera_M_contig114622.3044.1|Name=mRNA_M-pyrifera_M_contig114622.3044.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
APLHDGAEHAQDAIATEAQASPGVVRGRQHLTVVAGAGGVAARRTGTDEM
PAEVEHASVEVDLPSSTMAETVVAAPPAHKPEPVEETAGANPEPVAPSEP
SAEPVAARSAAKPAQKVASRRRDPAAKRAAGHAARAASEPPREHGGGWVI
GLILLSSVALVAWAATGFSLGFFLE*
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mRNA from alignment at M-pyrifera_M_contig114622:2..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114622.3044.1 ID=mRNA_M-pyrifera_M_contig114622.3044.1|Name=mRNA_M-pyrifera_M_contig114622.3044.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig114622:2..529+ (Macrocystis pyrifera P11B4 male)
GCGCCGTTGCATGATGGCGCTGAACACGCGCAGGATGCCATCGCCACCGA
GGCTCAGGCGTCGCCGGGAGTGGTCCGGGGGCGGCAGCATCTTACCGTCG
TTGCGGGCGCAGGCGGTGTTGCGGCCCGGCGCACCGGAACCGATGAAATG
CCTGCAGAAGTGGAGCATGCGTCGGTGGAGGTCGATCTGCCATCATCTAC
TATGGCGGAAACGGTAGTTGCCGCGCCTCCGGCGCACAAGCCGGAGCCGG
TTGAGGAAACCGCCGGCGCGAATCCTGAACCTGTGGCTCCCAGCGAACCC
TCGGCAGAGCCCGTTGCAGCGAGGTCCGCTGCGAAGCCTGCGCAAAAAGT
GGCGTCCAGGCGCAGAGATCCAGCGGCGAAACGTGCAGCGGGGCACGCTG
CGCGTGCCGCTTCCGAACCGCCGCGGGAACACGGCGGTGGTTGGGTCATC
GGGCTTATTCTGTTGTCGTCAGTGGCTCTGGTTGCCTGGGCCGCCACCGG
GTTCAGCCTCGGTTTTTTTCTGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114622:2..529+

>mRNA_M-pyrifera_M_contig114622.3044.1 ID=mRNA_M-pyrifera_M_contig114622.3044.1|Name=mRNA_M-pyrifera_M_contig114622.3044.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig114622:2..529+ (Macrocystis pyrifera P11B4 male)
GCGCCGTTGCATGATGGCGCTGAACACGCGCAGGATGCCATCGCCACCGA
GGCTCAGGCGTCGCCGGGAGTGGTCCGGGGGCGGCAGCATCTTACCGTCG
TTGCGGGCGCAGGCGGTGTTGCGGCCCGGCGCACCGGAACCGATGAAATG
CCTGCAGAAGTGGAGCATGCGTCGGTGGAGGTCGATCTGCCATCATCTAC
TATGGCGGAAACGGTAGTTGCCGCGCCTCCGGCGCACAAGCCGGAGCCGG
TTGAGGAAACCGCCGGCGCGAATCCTGAACCTGTGGCTCCCAGCGAACCC
TCGGCAGAGCCCGTTGCAGCGAGGTCCGCTGCGAAGCCTGCGCAAAAAGT
GGCGTCCAGGCGCAGAGATCCAGCGGCGAAACGTGCAGCGGGGCACGCTG
CGCGTGCCGCTTCCGAACCGCCGCGGGAACACGGCGGTGGTTGGGTCATC
GGGCTTATTCTGTTGTCGTCAGTGGCTCTGGTTGCCTGGGCCGCCACCGG
GTTCAGCCTCGGTTTTTTTCTGGAATAGGCGCCGTTGCATGATGGCGCTG
AACACGCGCAGGATGCCATCGCCACCGAGGCTCAGGCGTCGCCGGGAGTG
GTCCGGGGGCGGCAGCATCTTACCGTCGTTGCGGGCGCAGGCGGTGTTGC
GGCCCGGCGCACCGGAACCGATGAAATGCCTGCAGAAGTGGAGCATGCGT
CGGTGGAGGTCGATCTGCCATCATCTACTATGGCGGAAACGGTAGTTGCC
GCGCCTCCGGCGCACAAGCCGGAGCCGGTTGAGGAAACCGCCGGCGCGAA
TCCTGAACCTGTGGCTCCCAGCGAACCCTCGGCAGAGCCCGTTGCAGCGA
GGTCCGCTGCGAAGCCTGCGCAAAAAGTGGCGTCCAGGCGCAGAGATCCA
GCGGCGAAACGTGCAGCGGGGCACGCTGCGCGTGCCGCTTCCGAACCGCC
GCGGGAACACGGCGGTGGTTGGGTCATCGGGCTTATTCTGTTGTCGTCAG
TGGCTCTGGTTGCCTGGGCCGCCACCGGGTTCAGCCTCGGTTTTTTTCTG
GAATAG
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