mRNA_M-pyrifera_M_contig114612.3043.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114612.3043.1
Unique NamemRNA_M-pyrifera_M_contig114612.3043.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: A0A5M6C2N2_9TREE (Mitochondrial genome maintenance protein MGM101 n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6C2N2_9TREE)

HSP 1 Score: 97.1 bits (240), Expect = 1.160e-22
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    4 QASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQET 204
            +A KS+AL+RCCKDLGIASELWD  FI  +K  H V+VFV H +K +K  LWR+KDAP+  YPW+ET
Sbjct:  251 EACKSNALMRCCKDLGIASELWDPSFIRAFKKKHCVEVFVEHVTKKNKKKLWRKKDAPKFDYPWKET 317
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BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: A0A5M3MCD7_CONPW (Mitochondrial genome maintenance protein MGM101 n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MCD7_CONPW)

HSP 1 Score: 95.1 bits (235), Expect = 2.620e-22
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 QASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQE 201
            +A KS+AL+RCCKDLG+ASELWD +FI  +KA HA +VF  H +   K  LWRRKD P+L+YPW+E
Sbjct:  198 EACKSNALMRCCKDLGVASELWDPRFIREFKAQHAAEVFAEHVNSKQKKKLWRRKDQPKLTYPWRE 263
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BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: A0A8K0XN69_9AGAM (Mitochondrial genome maintenance protein n=1 Tax=Cristinia sonorae TaxID=1940300 RepID=A0A8K0XN69_9AGAM)

HSP 1 Score: 95.1 bits (235), Expect = 3.240e-22
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    4 QASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQE 201
            +A KS+AL+RCCKDLG+ASELWD +FI  +KA HAV+VFV H     K  LWRRKD P+  YPW+E
Sbjct:  210 EACKSNALMRCCKDLGVASELWDPRFIREFKAKHAVEVFVEHLPTKKKKKLWRRKDQPKFDYPWKE 275
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BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: A0A167XM26_9AGAM (Mitochondrial genome maintenance protein MGM101 n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A167XM26_9AGAM)

HSP 1 Score: 94.4 bits (233), Expect = 4.390e-22
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    4 QASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQE 201
            +A KS+AL+RCCKDLGIASELWD +FI  +KA H ++VF  H  K  K  LWRRKD P+  YPW+E
Sbjct:  189 EACKSNALMRCCKDLGIASELWDPRFIREFKAKHCIEVFAEHMVKKTKKKLWRRKDQPKFGYPWKE 254
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BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: A0A2H3EU17_ARMGA (Mitochondrial genome maintenance protein MGM101 n=3 Tax=Physalacriaceae TaxID=862241 RepID=A0A2H3EU17_ARMGA)

HSP 1 Score: 93.6 bits (231), Expect = 6.780e-22
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    4 QASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQE 201
            +A KS+AL+RCCKDLGIASELWD +FI  +KA + V+VF  H     KS LWRRKDAP+L+YP+QE
Sbjct:  176 EACKSNALMRCCKDLGIASELWDPRFIREFKAKYCVEVFAEHLPTKKKSKLWRRKDAPKLAYPYQE 241
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BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: A0A0C3PCZ1_PHLGI (Mitochondrial genome maintenance protein MGM101 n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3PCZ1_PHLGI)

HSP 1 Score: 94.0 bits (232), Expect = 8.360e-22
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 QASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQET 204
            +A KS+AL+RCCKDLGIASELWD +FI  +KA H V +F  H +   K  LWRRKD P+  YPW+ET
Sbjct:  205 EAVKSNALMRCCKDLGIASELWDPRFIREFKAKHCVAIFAEHAATKQKKKLWRRKDQPKFDYPWKET 271
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BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: S7QII0_GLOTA (Mitochondrial genome maintenance protein MGM101 n=2 Tax=Gloeophyllales TaxID=452339 RepID=S7QII0_GLOTA)

HSP 1 Score: 92.0 bits (227), Expect = 1.040e-21
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    4 QASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQET 204
            +A+KS+AL+RCCKDLG+ASELWD +FI  +KA + V+VF  H     K  LWRRKD P+  YPW+ET
Sbjct:  130 EAAKSNALMRCCKDLGVASELWDPRFIREFKAKYCVEVFAEHVPTKKKKKLWRRKDQPKFDYPWKET 196
[Close]
BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: J4G6C9_9APHY (Mitochondrial genome maintenance protein MGM101 n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4G6C9_9APHY)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-21
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    4 QASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQE 201
            +A KS+AL+RCCKDLG+ASELWD +FI  +KA H V++F  H S   K  LWRRKD P+  YPW+E
Sbjct:  221 EACKSNALMRCCKDLGVASELWDPRFIREFKAKHCVEIFAEHTSTKKKKKLWRRKDQPKFDYPWKE 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: A0A0D0BUL3_9AGAR (Mitochondrial genome maintenance protein MGM101 n=1 Tax=Gymnopus luxurians FD-317 M1 TaxID=944289 RepID=A0A0D0BUL3_9AGAR)

HSP 1 Score: 93.2 bits (230), Expect = 1.180e-21
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 VQASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQET 204
            ++++KS+AL+RCCKDLGIAS+LWD +FI  +KA H V+VF  H +   K  LWRRKD P+L YP+QET
Sbjct:  184 LESAKSNALMRCCKDLGIASDLWDPRFIREFKAQHCVEVFAEHVTTKKKKKLWRRKDQPKLGYPYQET 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Match: A0A8H5I1C1_9AGAR (Mitochondrial genome maintenance protein MGM101 n=1 Tax=Gymnopus confluens TaxID=206315 RepID=A0A8H5I1C1_9AGAR)

HSP 1 Score: 92.0 bits (227), Expect = 3.330e-21
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 VQASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKSVLWRRKDAPELSYPWQET 204
            ++++KS+AL+RCCKDLGIASELWD +FI  +KA H V+VF  H     K  LWRRKD P+L YP+QE+
Sbjct:  185 LESAKSNALMRCCKDLGIASELWDPRFIREFKAQHCVEVFAEHLITKKKKKLWRRKDQPKLGYPYQES 252
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114612.3043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5M6C2N2_9TREE1.160e-2262.69Mitochondrial genome maintenance protein MGM101 n=... [more]
A0A5M3MCD7_CONPW2.620e-2260.61Mitochondrial genome maintenance protein MGM101 n=... [more]
A0A8K0XN69_9AGAM3.240e-2262.12Mitochondrial genome maintenance protein n=1 Tax=C... [more]
A0A167XM26_9AGAM4.390e-2260.61Mitochondrial genome maintenance protein MGM101 n=... [more]
A0A2H3EU17_ARMGA6.780e-2263.64Mitochondrial genome maintenance protein MGM101 n=... [more]
A0A0C3PCZ1_PHLGI8.360e-2259.70Mitochondrial genome maintenance protein MGM101 n=... [more]
S7QII0_GLOTA1.040e-2158.21Mitochondrial genome maintenance protein MGM101 n=... [more]
J4G6C9_9APHY1.070e-2159.09Mitochondrial genome maintenance protein MGM101 n=... [more]
A0A0D0BUL3_9AGAR1.180e-2158.82Mitochondrial genome maintenance protein MGM101 n=... [more]
A0A8H5I1C1_9AGAR3.330e-2158.82Mitochondrial genome maintenance protein MGM101 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114612contigM-pyrifera_M_contig114612:346..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score95.1
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog80637.XP_007773313.1
Preferred nameMGM101
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000229,GO:0000262,GO:0000725,GO:0000733,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0031974,GO:0032042,GO:0032392,GO:0033554,GO:0034641,GO:0035690,GO:0036297,GO:0042221,GO:0042493,GO:0042645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.Mitochondrial genome maintenance MGM101
EggNOG OGs22E5W@155619,29YJK@1,2RXU4@2759,39RWE@33154,3NXAF@4751,3V0MQ@5204
COG Functional cat.S
Best tax levelAgaricomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.2647204-CDS-M-pyrifera_M_contig114612:345..5491622815662.2647204-CDS-M-pyrifera_M_contig114612:345..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114612 346..549 +
1692277510.3043673-CDS-M-pyrifera_M_contig114612:345..5491692277510.3043673-CDS-M-pyrifera_M_contig114612:345..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114612 346..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114612.3043.1prot_M-pyrifera_M_contig114612.3043.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114612 346..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114612.3043.1

>prot_M-pyrifera_M_contig114612.3043.1 ID=prot_M-pyrifera_M_contig114612.3043.1|Name=mRNA_M-pyrifera_M_contig114612.3043.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
VQASKSSALVRCCKDLGIASELWDTQFIAHWKATHAVQVFVTHRSKGDKS
VLWRRKDAPELSYPWQET
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mRNA from alignment at M-pyrifera_M_contig114612:346..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114612.3043.1 ID=mRNA_M-pyrifera_M_contig114612.3043.1|Name=mRNA_M-pyrifera_M_contig114612.3043.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig114612:346..549+ (Macrocystis pyrifera P11B4 male)
GTGCAGGCGAGCAAGTCGTCGGCGCTAGTGCGGTGCTGCAAGGACCTGGG
CATTGCAAGTGAGCTGTGGGACACACAGTTCATCGCACACTGGAAGGCCA
CACACGCGGTGCAGGTGTTCGTCACCCACCGCTCCAAGGGCGACAAGTCC
GTCCTCTGGCGCCGCAAGGATGCGCCAGAGCTCTCCTATCCCTGGCAAGA
GACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114612:346..549+

>mRNA_M-pyrifera_M_contig114612.3043.1 ID=mRNA_M-pyrifera_M_contig114612.3043.1|Name=mRNA_M-pyrifera_M_contig114612.3043.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig114612:346..549+ (Macrocystis pyrifera P11B4 male)
GTGCAGGCGAGCAAGTCGTCGGCGCTAGTGCGGTGCTGCAAGGACCTGGG
CATTGCAAGTGAGCTGTGGGACACACAGTTCATCGCACACTGGAAGGCCA
CACACGCGGTGCAGGTGTTCGTCACCCACCGCTCCAAGGGCGACAAGTCC
GTCCTCTGGCGCCGCAAGGATGCGCCAGAGCTCTCCTATCCCTGGCAAGA
GACGGTGCAGGCGAGCAAGTCGTCGGCGCTAGTGCGGTGCTGCAAGGACC
TGGGCATTGCAAGTGAGCTGTGGGACACACAGTTCATCGCACACTGGAAG
GCCACACACGCGGTGCAGGTGTTCGTCACCCACCGCTCCAAGGGCGACAA
GTCCGTCCTCTGGCGCCGCAAGGATGCGCCAGAGCTCTCCTATCCCTGGC
AAGAGACG
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