mRNA_M-pyrifera_M_contig114597.3037.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114597.3037.1
Unique NamemRNA_M-pyrifera_M_contig114597.3037.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: A0A200PP66_9MAGN (Uncharacterized protein n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A200PP66_9MAGN)

HSP 1 Score: 239 bits (610), Expect = 9.570e-79
Identity = 114/118 (96.61%), Postives = 114/118 (96.61%), Query Frame = 1
Query:   40 MSAKMRTTCTWTERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDESLAPRCRLFATWG 393
            MS KMRTTCTWTERPYEA LFPGIGFGPFLRSLGG RRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRA RRLALECKGRRELDCKTHPSSRDESLAPRCRLFATWG
Sbjct:    1 MSVKMRTTCTWTERPYEALLFPGIGFGPFLRSLGGGRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDESLAPRCRLFATWG 118          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: A0A6J5U9F4_PRUAR (Uncharacterized protein n=3 Tax=rosids TaxID=71275 RepID=A0A6J5U9F4_PRUAR)

HSP 1 Score: 214 bits (544), Expect = 6.190e-70
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
Query:   52 MRTTCTWTERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDES 357
            MRTTCTWTERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDES
Sbjct:    1 MRTTCTWTERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDES 102          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: G7JVL6_MEDTR (Uncharacterized protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=G7JVL6_MEDTR)

HSP 1 Score: 191 bits (485), Expect = 1.950e-57
Identity = 93/109 (85.32%), Postives = 95/109 (87.16%), Query Frame = -3
Query:   65 PRWRRADIEVPNFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGP*V*WLGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRC 391
            P  R   I   +FRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLG  + W  PPRK AFFAFHLSCAGKAQSQSQGTVKLHRVFLSRC
Sbjct:  121 PSTRHRRITKADFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLG--LYWHKPPRKEAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRC 227          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: A0A444YMV8_ARAHY (Uncharacterized protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444YMV8_ARAHY)

HSP 1 Score: 186 bits (472), Expect = 2.740e-57
Identity = 95/111 (85.59%), Postives = 96/111 (86.49%), Query Frame = 1
Query:   79 RPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHP------SSRDESLAPRCRLFATWG 393
            + YEASLFPGIGFG FLRSLGG RRRPP GGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAR RLALE KGRRELDCKTHP      S R E LAPRCRLFATWG
Sbjct:   42 KTYEASLFPGIGFGLFLRSLGGGRRRPPFGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARWRLALEYKGRRELDCKTHPLIFPKSSHRWEGLAPRCRLFATWG 152          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: T2DPD7_PHAVU (Cell wall-associated hydrolase n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=T2DPD7_PHAVU)

HSP 1 Score: 182 bits (461), Expect = 2.500e-53
Identity = 100/145 (68.97%), Postives = 104/145 (71.72%), Query Frame = -3
Query:    2 PRWRRADIEVPNFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGP*V*WLG---------------PPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRCR*SASSQTWLWPLASL*DSAQ 391
            P  R   I   +FRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYL GGLRPIETVYLRLS GP   W                 PP+K AFFA H+ CAGKAQSQSQ TVKL RVFLSRCR SASSQT L+   SL DSAQ
Sbjct:  138 PSTRHRRITKADFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLWGGLRPIETVYLRLSPGPY--WHKVRIPTLPEWYLTDGLPPQKKAFFALHIRCAGKAQSQSQETVKLQRVFLSRCR-SASSQTCLFHRVSLRDSAQ 279          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: A0A5A7TL99_CUCME (Uncharacterized protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TL99_CUCME)

HSP 1 Score: 169 bits (429), Expect = 3.270e-52
Identity = 87/117 (74.36%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    7 HCLRERPGAIAMSAKMRTTCTWTERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDES 357
            HCL ER   I MS KMRTTC WT+RPYEASLFPGIGF PFLRSLG               PT QGTVSGRQFLWGVGLPK NGG+QRFP+AR RLALE KGRRELDCKTHPSSRDES
Sbjct:   15 HCLGERLDEIDMSVKMRTTCNWTKRPYEASLFPGIGFEPFLRSLG---------------PTSQGTVSGRQFLWGVGLPKDNGGMQRFPQARLRLALEWKGRRELDCKTHPSSRDES 116          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: A0A7G2FKR6_ARATH (Uncharacterized protein ycf68 n=5 Tax=Magnoliopsida TaxID=3398 RepID=A0A7G2FKR6_ARATH)

HSP 1 Score: 174 bits (440), Expect = 2.680e-49
Identity = 88/106 (83.02%), Postives = 88/106 (83.02%), Query Frame = 1
Query:   40 MSAKMRTTCTWTERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDES 357
            MS KMRTTCTWTERPYEASLFPGIGFG FLRSLG               PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRA RRLALECKGRRELDCKTHPSSRDES
Sbjct:  441 MSVKMRTTCTWTERPYEASLFPGIGFGLFLRSLG---------------PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDES 531          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: A0A166GEI3_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166GEI3_DAUCS)

HSP 1 Score: 169 bits (427), Expect = 3.840e-49
Identity = 86/118 (72.88%), Postives = 90/118 (76.27%), Query Frame = -3
Query:   38 PRWRRADIEVPNFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGP*V*WLGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRCR*SASSQTW 391
            P  R   I   +FRPCSTGGSCSQAPFCLCTRG  SV PEE FARLRYLLGGLRPIETV LRLSLGP      PPRK AFFAFHLSC GKAQSQS GT+KLHRVFLSR   S + + W
Sbjct:   98 PSTRHRRITKADFRPCSTGGSCSQAPFCLCTRGQFSVRPEEIFARLRYLLGGLRPIETVDLRLSLGP------PPRKEAFFAFHLSCTGKAQSQSHGTMKLHRVFLSRSPTSLTFRHW 209          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: A0A7G2FMH4_ARATH (Uncharacterized protein ycf68 n=8 Tax=Magnoliopsida TaxID=3398 RepID=A0A7G2FMH4_ARATH)

HSP 1 Score: 174 bits (440), Expect = 6.640e-49
Identity = 88/106 (83.02%), Postives = 88/106 (83.02%), Query Frame = 1
Query:   40 MSAKMRTTCTWTERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDES 357
            MS KMRTTCTWTERPYEASLFPGIGFG FLRSLG               PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRA RRLALECKGRRELDCKTHPSSRDES
Sbjct:  501 MSVKMRTTCTWTERPYEASLFPGIGFGLFLRSLG---------------PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDES 591          
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Match: A0A6D2J9E2_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J9E2_9BRAS)

HSP 1 Score: 149 bits (376), Expect = 4.100e-43
Identity = 77/94 (81.91%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   76 ERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDES 357
            ERPYEASLFPGIGFG FLRSLG               PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRA RRLALECKGRRELDCKTHPSSRDES
Sbjct:  116 ERPYEASLFPGIGFGLFLRSLG---------------PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDES 194          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114597.3037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A200PP66_9MAGN9.570e-7996.61Uncharacterized protein n=5 Tax=Mesangiospermae Ta... [more]
A0A6J5U9F4_PRUAR6.190e-70100.00Uncharacterized protein n=3 Tax=rosids TaxID=71275... [more]
G7JVL6_MEDTR1.950e-5785.32Uncharacterized protein n=2 Tax=Magnoliopsida TaxI... [more]
A0A444YMV8_ARAHY2.740e-5785.59Uncharacterized protein n=1 Tax=Arachis hypogaea T... [more]
T2DPD7_PHAVU2.500e-5368.97Cell wall-associated hydrolase n=1 Tax=Phaseolus v... [more]
A0A5A7TL99_CUCME3.270e-5274.36Uncharacterized protein n=1 Tax=Cucumis melo var. ... [more]
A0A7G2FKR6_ARATH2.680e-4983.02Uncharacterized protein ycf68 n=5 Tax=Magnoliopsid... [more]
A0A166GEI3_DAUCS3.840e-4972.88Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A7G2FMH4_ARATH6.640e-4983.02Uncharacterized protein ycf68 n=8 Tax=Magnoliopsid... [more]
A0A6D2J9E2_9BRAS4.100e-4381.91Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114597contigM-pyrifera_M_contig114597:22..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score146.0
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog3712.Bo01051s070.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E8J1@1,2SF10@2759,37XUZ@33090,3GMW1@35493,3I147@3699
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons3
Model size393
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114597.3037.1prot_M-pyrifera_M_contig114597.3037.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114597 22..570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.0151622-CDS-M-pyrifera_M_contig114597:21..2051622815662.0151622-CDS-M-pyrifera_M_contig114597:21..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114597 22..205 +
1692277510.193093-CDS-M-pyrifera_M_contig114597:21..2051692277510.193093-CDS-M-pyrifera_M_contig114597:21..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114597 22..205 +
1622815662.0282485-CDS-M-pyrifera_M_contig114597:250..4211622815662.0282485-CDS-M-pyrifera_M_contig114597:250..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114597 251..421 +
1692277510.2027986-CDS-M-pyrifera_M_contig114597:250..4211692277510.2027986-CDS-M-pyrifera_M_contig114597:250..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114597 251..421 +
1622815662.0405178-CDS-M-pyrifera_M_contig114597:532..5701622815662.0405178-CDS-M-pyrifera_M_contig114597:532..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114597 533..570 +
1692277510.214364-CDS-M-pyrifera_M_contig114597:532..5701692277510.214364-CDS-M-pyrifera_M_contig114597:532..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114597 533..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114597.3037.1

>prot_M-pyrifera_M_contig114597.3037.1 ID=prot_M-pyrifera_M_contig114597.3037.1|Name=mRNA_M-pyrifera_M_contig114597.3037.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
SGHCLRERPGAIAMSAKMRTTCTWTERPYEASLFPGIGFGPFLRSLGGRR
RRPPSGGARAIRPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALE
CKGRRELDCKTHPSSRDESLAPRCRLFATWG
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mRNA from alignment at M-pyrifera_M_contig114597:22..570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114597.3037.1 ID=mRNA_M-pyrifera_M_contig114597.3037.1|Name=mRNA_M-pyrifera_M_contig114597.3037.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig114597:22..570+ (Macrocystis pyrifera P11B4 male)
TCTGGGCACTGTCTCAGAGAGAGGCCAGGGGCCATAGCCATGTCTGCGAA GATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTCACTGT TCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGA AGAAGGCCCCCTTCCGGGGGGGCCCGAGCCATCAGTGAGATACCACTCTG GAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAG TCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGA GGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAA AGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAA GTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACG GATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGAGCTCACA TCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114597:22..570+

>mRNA_M-pyrifera_M_contig114597.3037.1 ID=mRNA_M-pyrifera_M_contig114597.3037.1|Name=mRNA_M-pyrifera_M_contig114597.3037.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig114597:22..570+ (Macrocystis pyrifera P11B4 male)
TCTGGGCACTGTCTCAGAGAGAGGCCAGGGGCCATAGCCATGTCTGCGAA
GATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTCACTGT
TCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGA
AGAAGGCCCCCTTCCGGGGGGGCCCGAGCCATCATCTGGGCACTGTCTCA
GAGAGAGGCCAGGGGCCATAGCCATGTCTGCGAAGATGCGGACTACCTGC
ACCTGGACAGAAAGACCCTATGAAGCTTCACTGTTCCCTGGGATTGGCTT
TGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCCCCTTCCG
GGGGGGCCCGAGCCATCAGACCTACGGGCCAAGGGACAGTCTCAGGTAGA
CAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAG
GTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGG
AGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGACCTACGGGC
CAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAA
AGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCC
TCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGC
AGGGACGAAAGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCGT
TTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGC
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