mRNA_M-pyrifera_M_contig114535.3035.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114535.3035.1
Unique NamemRNA_M-pyrifera_M_contig114535.3035.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A518A0V4_9PLAN (Dehydrogenase n=7 Tax=Gimesia TaxID=1649453 RepID=A0A518A0V4_9PLAN)

HSP 1 Score: 299 bits (765), Expect = 1.790e-99
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQFPNEQRRMAG 468
            QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNS+RPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVE+IR+NTAPLVGG QALEAMQVAERVLEAVNAHQWDGS+QG VGPFIQFP+EQRR+AG
Sbjct:  203 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSYRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVEAIRSNTAPLVGGAQALEAMQVAERVLEAVNAHQWDGSEQGAVGPFIQFPSEQRRLAG 358          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A518I6P1_9PLAN (Dehydrogenase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I6P1_9PLAN)

HSP 1 Score: 270 bits (691), Expect = 2.960e-88
Identity = 130/156 (83.33%), Postives = 144/156 (92.31%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQFPNEQRRMAG 468
            QNGCIADLTASRICP AKR MQ+WG SGCVTVDFTSREV S++PSETLLYGTPPLERARKAG N+EALKQ+VFGTFLKV++P+VSSADALTAELSSFVE+IR    PLVGG QAL+AMQ+AERVLE+VN+H+WDGSQQG VGPFIQFP EQRRMAG
Sbjct:  203 QNGCIADLTASRICPTAKRDMQIWGASGCVTVDFTSREVTSYQPSETLLYGTPPLERARKAGANIEALKQDVFGTFLKVDSPDVSSADALTAELSSFVEAIRTGAEPLVGGPQALQAMQIAERVLESVNSHEWDGSQQGAVGPFIQFPAEQRRMAG 358          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A517WT65_9PLAN (Dehydrogenase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WT65_9PLAN)

HSP 1 Score: 266 bits (681), Expect = 9.670e-87
Identity = 127/156 (81.41%), Postives = 145/156 (92.95%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQFPNEQRRMAG 468
            QNGCIADLTASRICP AKRTMQ+WG SGCV VDFTSREV S++PSETLLYGTPPLERARK G NLEALKQ+VFGTFLKV++P+VSSADALTAEL+SFV++IR+N+ PLVGG QA+EAMQVAE+VLEAVN H+W+GSQQG +GPFIQFP E+RRMAG
Sbjct:  203 QNGCIADLTASRICPSAKRTMQIWGTSGCVNVDFTSREVTSYQPSETLLYGTPPLERARKTGANLEALKQDVFGTFLKVDSPKVSSADALTAELTSFVDAIRSNSEPLVGGAQAIEAMQVAEQVLEAVNRHEWEGSQQGAIGPFIQFPAEERRMAG 358          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A517VDW5_9PLAN (Dehydrogenase n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VDW5_9PLAN)

HSP 1 Score: 262 bits (669), Expect = 6.340e-85
Identity = 127/156 (81.41%), Postives = 142/156 (91.03%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQFPNEQRRMAG 468
            QNGCIADLTASRI P AKR MQLWG SGCV+VDFTSREV ++RPSETLLYGTPPLERARKAG NLEALKQ+VFGTFLKVE PEVS+ADALTAEL+SFV++IR   APLVGGTQAL+AMQVA++VL AVN H+WDG+QQG VGPFIQFP E+RR+AG
Sbjct:  203 QNGCIADLTASRISPSAKRAMQLWGASGCVSVDFTSREVTAYRPSETLLYGTPPLERARKAGANLEALKQDVFGTFLKVETPEVSAADALTAELASFVDAIRTGVAPLVGGTQALQAMQVADQVLSAVNEHEWDGTQQGAVGPFIQFPPEERRLAG 358          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A2E7D7Q0_9PLAN (Oxidoreductase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D7Q0_9PLAN)

HSP 1 Score: 172 bits (436), Expect = 7.830e-50
Identity = 85/146 (58.22%), Postives = 109/146 (74.66%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQ 438
            + GCIADL ASRI P A R MQ+W  +GCV VDFTSREV    P+ETL +GT P+ERAR+   ++E LK++VF +F+K+++P VS ADALTAELSSFV++I + T   V   QAL+AMQVAE+V+ A+NAH WDG Q   +GPF Q
Sbjct:  203 EGGCIADLVASRINPGAARQMQIWSAAGCVNVDFTSREVRHAYPTETLKFGTSPVERARQPDADIEQLKRDVFESFIKIDSPSVSDADALTAELSSFVDAISSGTPVSVDSGQALKAMQVAEQVVSAINAHAWDGQQGHLIGPFPQ 348          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: UPI00141E741C (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141E741C)

HSP 1 Score: 171 bits (433), Expect = 2.310e-49
Identity = 83/153 (54.25%), Postives = 105/153 (68.63%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQFPNEQRR 459
            ++GCIADLTASRI P   R+MQ+W   G  TVDFTSREV  + PSETLL+GT PLER+++ G N+E LK  VFG F+ V++  V   DALTAELSSF +S+R  + P   G  AL+AM+VA+RV   V  HQWDG+  G +GP   F   QR+
Sbjct:  205 ESGCIADLTASRINPSGSRSMQIWSPQGTTTVDFTSREVTRYAPSETLLFGTSPLERSQQPGANIEQLKSNVFGKFVTVDSIPVEEGDALTAELSSFADSVRTGSRPECSGEDALKAMEVADRVQRCVLTHQWDGTSTGAIGPHATFSTPQRK 357          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A517T3Z4_9PLAN (Dehydrogenase n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T3Z4_9PLAN)

HSP 1 Score: 166 bits (421), Expect = 1.540e-47
Identity = 77/152 (50.66%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQFPNEQR 456
            +NGCIADL+ +R+ P A RT+Q W  +GC T + T+REV  F PSE L+ G  P+E+A++ G +++ LK E+F   L  + PEVS ADALTAELS+FV+ +R  TAP+ GG +A+ A++ A+ VL +V AHQWDGS +GPVGPF  F + ++
Sbjct:  206 ENGCIADLSVNRVNPSAARTIQTWAPTGCATANLTTREVKVFNPSEGLIGGASPIEKAKQPGADIDQLKAEMFSGTLTTDEPEVSDADALTAELSAFVDCVRTGTAPICGGQEAVAALKAADAVLLSVAAHQWDGSAEGPVGPFAWFNDSEQ 357          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A3N5RRP7_9PLAN (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5RRP7_9PLAN)

HSP 1 Score: 163 bits (413), Expect = 2.190e-46
Identity = 74/154 (48.05%), Postives = 107/154 (69.48%), Query Frame = 1
Query:    7 GCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQFPNEQRRMAG 468
            GCIADL+ASR+ PV++R+MQ+W   GCV +DF +RE   +RP+ TLL+GTPP++RAR+ G N++ LK +VFGT ++V+ P     D LT EL +FVES+R    P V G Q L A++ AE +L+++  HQWD +  G VGP +     +++MAG
Sbjct:  205 GCIADLSASRVSPVSRRSMQVWSGDGCVQIDFAAREAAVYRPTPTLLFGTPPVDRARQPGANIDQLKADVFGTLIEVQKPLAVPRDQLTEELLAFVESVRTREPPEVSGEQGLTAVETAEAILDSIARHQWDATAHGRVGPLLATGMPRQKMAG 358          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A517R6E3_9BACT (Dehydrogenase n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517R6E3_9BACT)

HSP 1 Score: 161 bits (408), Expect = 1.600e-45
Identity = 77/147 (52.38%), Postives = 100/147 (68.03%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQF 441
            +NGCIADL+ +R+ P   R +Q W    CV  D TSR+V  FRPSE LL G  PL +AR+ G +++ LK ++FG  L VE PEVS ADALTAEL++FV+  R  T P+V GT+A +A+ +A+RVL+ V AHQWDG   G VGP   F
Sbjct:  213 ENGCIADLSVNRVNPSPSRAIQTWSPQACVAADLTSRDVTVFRPSEALLAGNGPLAKARRPGADIDQLKADLFGIDLGVETPEVSGADALTAELAAFVDCARTGTRPIVSGTEATKALAIADRVLQEVAAHQWDGRANGAVGPLAWF 359          
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Match: A0A517ZUT5_9PLAN (Dehydrogenase n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZUT5_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 4.690e-45
Identity = 80/158 (50.63%), Postives = 111/158 (70.25%), Query Frame = 1
Query:    1 QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLYGTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVESIRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGP--FIQFPNEQRRMAG 468
            +NGC+ADLTA+R+     R+MQ+W  +G V +DF +R+V +  PS+ LLYGT P+ERA++ G ++E LK +VF  F++VENP V+  DALTAELSSFV+ IR    PLV G   L A++ AE++LE+V AH WDG+ QG +GP  F   P   R++AG
Sbjct:  203 ENGCVADLTANRVSMNVSRSMQVWSNTGFVGIDFGARQVTTCAPSDALLYGTSPVERAQQPGADIEKLKTDVFEHFIRVENPTVTPHDALTAELSSFVDCIRTQQKPLVDGQTGLLALKAAEQILESVAAHAWDGNSQGAIGPAPFFAAP---RKLAG 357          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114535.3035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A0V4_9PLAN1.790e-9994.87Dehydrogenase n=7 Tax=Gimesia TaxID=1649453 RepID=... [more]
A0A518I6P1_9PLAN2.960e-8883.33Dehydrogenase n=2 Tax=Gimesia TaxID=1649453 RepID=... [more]
A0A517WT65_9PLAN9.670e-8781.41Dehydrogenase n=2 Tax=Gimesia aquarii TaxID=252796... [more]
A0A517VDW5_9PLAN6.340e-8581.41Dehydrogenase n=10 Tax=Planctomycetaceae TaxID=126... [more]
A0A2E7D7Q0_9PLAN7.830e-5058.22Oxidoreductase n=1 Tax=Planctomycetaceae bacterium... [more]
UPI00141E741C2.310e-4954.25Gfo/Idh/MocA family oxidoreductase n=1 Tax=Rubinis... [more]
A0A517T3Z4_9PLAN1.540e-4750.66Dehydrogenase n=1 Tax=Calycomorphotria hydatis Tax... [more]
A0A3N5RRP7_9PLAN2.190e-4648.05Gfo/Idh/MocA family oxidoreductase n=1 Tax=Plancto... [more]
A0A517R6E3_9BACT1.600e-4552.38Dehydrogenase n=1 Tax=Planctomycetes bacterium Pan... [more]
A0A517ZUT5_9PLAN4.690e-4550.63Dehydrogenase n=3 Tax=Symmachiella TaxID=2795780 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114535contigM-pyrifera_M_contig114535:100..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score263.8
Seed ortholog evalue5e-68
Seed eggNOG ortholog344747.PM8797T_06010
Preferred namegnnA
KEGG koko:K09949
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Oxidoreductase domain protein
EggNOG OGs2IXAX@203682,COG0673@1,COG0673@2
COG Functional cat.S
BiGG ReactioniAF987.Gmet_2352
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.9359891-CDS-M-pyrifera_M_contig114535:99..5701622815661.9359891-CDS-M-pyrifera_M_contig114535:99..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114535 100..570 -
1692277510.1703181-CDS-M-pyrifera_M_contig114535:99..5701692277510.1703181-CDS-M-pyrifera_M_contig114535:99..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114535 100..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114535.3035.1prot_M-pyrifera_M_contig114535.3035.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114535 100..570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114535.3035.1

>prot_M-pyrifera_M_contig114535.3035.1 ID=prot_M-pyrifera_M_contig114535.3035.1|Name=mRNA_M-pyrifera_M_contig114535.3035.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
QNGCIADLTASRICPVAKRTMQLWGVSGCVTVDFTSREVNSFRPSETLLY
GTPPLERARKAGVNLEALKQEVFGTFLKVENPEVSSADALTAELSSFVES
IRNNTAPLVGGTQALEAMQVAERVLEAVNAHQWDGSQQGPVGPFIQFPNE
QRRMAG*
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mRNA from alignment at M-pyrifera_M_contig114535:100..570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114535.3035.1 ID=mRNA_M-pyrifera_M_contig114535.3035.1|Name=mRNA_M-pyrifera_M_contig114535.3035.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig114535:100..570- (Macrocystis pyrifera P11B4 male)
CAGAATGGATGTATTGCCGACCTGACTGCCAGCCGGATCTGTCCGGTAGC GAAACGGACCATGCAGCTCTGGGGCGTTTCCGGATGCGTGACCGTTGACT TCACCAGCCGGGAAGTGAATTCCTTTCGGCCTTCCGAAACTCTGCTGTAC GGCACTCCTCCGCTGGAGCGAGCCCGGAAAGCAGGCGTAAACCTGGAAGC ATTGAAACAGGAAGTCTTCGGAACGTTTCTGAAAGTGGAGAATCCCGAAG TCTCTTCGGCAGATGCTCTGACTGCAGAGCTGAGCAGCTTTGTGGAATCG ATTCGTAATAATACAGCGCCCCTGGTAGGGGGAACCCAGGCTCTGGAAGC CATGCAGGTTGCAGAGCGAGTACTGGAAGCAGTCAATGCTCATCAGTGGG ATGGCAGCCAGCAGGGACCTGTCGGCCCCTTCATCCAGTTTCCGAACGAA CAACGCCGCATGGCCGGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114535:100..570-

>mRNA_M-pyrifera_M_contig114535.3035.1 ID=mRNA_M-pyrifera_M_contig114535.3035.1|Name=mRNA_M-pyrifera_M_contig114535.3035.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig114535:100..570- (Macrocystis pyrifera P11B4 male)
CAGAATGGATGTATTGCCGACCTGACTGCCAGCCGGATCTGTCCGGTAGC
GAAACGGACCATGCAGCTCTGGGGCGTTTCCGGATGCGTGACCGTTGACT
TCACCAGCCGGGAAGTGAATTCCTTTCGGCCTTCCGAAACTCTGCTGTAC
GGCACTCCTCCGCTGGAGCGAGCCCGGAAAGCAGGCGTAAACCTGGAAGC
ATTGAAACAGGAAGTCTTCGGAACGTTTCTGAAAGTGGAGAATCCCGAAG
TCTCTTCGGCAGATGCTCTGACTGCAGAGCTGAGCAGCTTTGTGGAATCG
ATTCGTAATAATACAGCGCCCCTGGTAGGGGGAACCCAGGCTCTGGAAGC
CATGCAGGTTGCAGAGCGAGTACTGGAAGCAGTCAATGCTCATCAGTGGG
ATGGCAGCCAGCAGGGACCTGTCGGCCCCTTCATCCAGTTTCCGAACGAA
CAACGCCGCATGGCCGGCTAGCAGAATGGATGTATTGCCGACCTGACTGC
CAGCCGGATCTGTCCGGTAGCGAAACGGACCATGCAGCTCTGGGGCGTTT
CCGGATGCGTGACCGTTGACTTCACCAGCCGGGAAGTGAATTCCTTTCGG
CCTTCCGAAACTCTGCTGTACGGCACTCCTCCGCTGGAGCGAGCCCGGAA
AGCAGGCGTAAACCTGGAAGCATTGAAACAGGAAGTCTTCGGAACGTTTC
TGAAAGTGGAGAATCCCGAAGTCTCTTCGGCAGATGCTCTGACTGCAGAG
CTGAGCAGCTTTGTGGAATCGATTCGTAATAATACAGCGCCCCTGGTAGG
GGGAACCCAGGCTCTGGAAGCCATGCAGGTTGCAGAGCGAGTACTGGAAG
CAGTCAATGCTCATCAGTGGGATGGCAGCCAGCAGGGACCTGTCGGCCCC
TTCATCCAGTTTCCGAACGAACAACGCCGCATGGCCGGCTAG
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